BAC Information

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BAC

Clone NameB6Ng01-085A20
Chromosome1 (Build37)
Map Location 113,040,628 - 113,195,347
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A20.bB6Ng01-085A20.g
ACCDH898830DH898831
length1,0651,135
definitionDH898830|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A20, 5' end.DH898831|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,040,628 - 113,041,359)(113,194,207 - 113,195,347)
sequence
gaattccccacacctaggcactttaccccataaaaacccctatctttcga
gcctcaggatcgaatccactgtctaatgtgtgagatatgttttgacccag
agctctgtcattaaactacctcgtgtgtttacagcaagaaggattcttgt
gtttctttaggtgtgctctctctcccaagactagagtgggggctcctgaa
aagggggtatcacatcttgggggctcgtccaggatttggggacacccaga
aacccgagaataccccttgggggtacattgtgtgagtctcgtatgttgtc
tgttgtctaagtgtggtgctgctgaacttgtgtcttcttttttcagttct
gtgattgtgggtttgagtccctcctggtgagttggagtcctgcttgggtt
tcctgttctggtattctgtattctgacagatgccactgtggaccgcaagg
acctactggttgcgggaggaagacatcctaaggccccacaggctgcaact
ctgtaagacgttcaatgggtggaagggggtcgatgtggaaactgaccccc
atcaagaagggggacaatgttgaatcagatccccatcaggaagtctcgtt
tggctggctgtataagtccagatttggacacgtgtgtttagacatactag
tgtcttgtgtctttgtttctgggtttttttttttttttttttttttcaga
tttttgttatgggacagactgtgtcaacccttttgtctctgactgtagac
ttgggactgacgttaagacagaatttgtcaatgatggttaagcaaaacaa
cttggcgctgttttctcgtggacaggccgcaccgctgactgcttggagga
gctctgggaggtagccacagagcacagctagggccttgacagagcactag
aactcggtgtgaaacagcgcacaggctttttggtcacctactcttcactt
ctgagtttcaaaggaactgcatggcgcagtctcagcagtctcagcaccaa
accacagacagggtgggtgggaaattccgatgcaaaagtttccccaggaa
ggccactaccgccat
gaattctcaaatgtggagccttaaatgcctgagaagcactgaaagagatg
ttcaactttattagccaccgggtaaatgaaaatcagaatgactcttagaa
ctttcttaacccttttgtgagctgtttataataaaacagatattcctatt
ttctgttatattctcaatagtattttataaaaaagatgtacctccccacc
tcagggaaaaaggactcaagaaaatcctaaacagcataataccttgataa
tgggttccagttttataagaatgataaataacttctatttatttacctgc
ttttgactattctattttttatgagagcttaaacatcattttgaactgta
atgtattctgtgaaagagaactacatgatgtatcacaaattataatacag
acagatgaaactgaggattcagaacatattgccagtggttcttggtctac
tatgaatgaatctactgagataaatcagagaataagagtaaggggactct
aaaaagaggcagactatagaaaagtattgttctgtataattaaattggtg
agatattatttctgacaaataatcatagctacctcatgtcattgatgatc
atgtggactcaacaaaaacacataatctagaaaagaaaatgagaaggtat
aaatttctatctatagcctaatatcctcaataaatgacagagagtagggt
gagtagctcatatttgagacattttgtgttttctctgtgtgggagaataa
ggcaattgtaaaaggctagaagtgtgggacattttggacttccaaggaca
gtaaactaaaaagtattttgtactgttacagaataacttgcaacctatta
atgaaacatcacatacttaattttacaccaactttagctcattgacattc
atctcattctaaagtgagttaaaattgagtgagaatttaacagcaaatag
cacttctttctatctaaatttctcacttggaagtcaccatatacatggat
atatactatcaatctttataacatgcaataacatggcattgcaagaacaa
ttgaaaagaaaaattgatactgtaagtgtgataatggtcactgaaatttt
agatccgtttagtagctttcgtggaagctcattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113040628_113041359
seq2: B6Ng01-085A20.b_377_1109

seq1  TCTTCTTTTTTCAGTTCTGTGATTGTGGGTTTGAGTCCCTCCTGGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTCAGTTCTGTGATTGTGGGTTTGAGTCCCTCCTGGTGAGT  50

seq1  TGGAGTCCTGCTTGGGTTTCCTGTTCTGGTATTCTGTATTCTGACAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTGCTTGGGTTTCCTGTTCTGGTATTCTGTATTCTGACAGATG  100

seq1  CCACTGTGGACCGCAAGGACCTACTGGTTGCGGGAGGAAGACATCCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGACCGCAAGGACCTACTGGTTGCGGGAGGAAGACATCCTAAG  150

seq1  GCCCCACAGGCTGCAACTCTGTAAGACGTTCAATGGGTGGAAGGGGGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAGGCTGCAACTCTGTAAGACGTTCAATGGGTGGAAGGGGGTCG  200

seq1  ATGTGGAAACTGACCCCCATCAAGAAGGGGGACAATGTTGAATCAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAACTGACCCCCATCAAGAAGGGGGACAATGTTGAATCAGATCC  250

seq1  CCATCAGGAAGTCTCGTTTGGCTGGCTGTATAAGTCCAGATTTGGACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGAAGTCTCGTTTGGCTGGCTGTATAAGTCCAGATTTGGACACG  300

seq1  TGTGTTTAGACATACTAGTGTCTTGTGTCTTTGTTTCTGGGTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGACATACTAGTGTCTTGTGTCTTTGTTTCTGGGTTTTTTTTT  350

seq1  TTTTTTTTTTTTTTCAGATTTTTGTTATGGGACAGACTGTGTCAACCC-T  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTTTTTTTTTTCAGATTTTTGTTATGGGACAGACTGTGTCAACCCTT  400

seq1  TTGTCTCTGACTGTAGACTT-GGACTGACGTTAAGACAGAATTTGTCAAT  448
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGTCTCTGACTGTAGACTTGGGACTGACGTTAAGACAGAATTTGTCAAT  450

seq1  GATGGTTAAGCAAAACAACTTGGCGCTGTTTTCCCGTGGACAGGCCGCAC  498
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGGTTAAGCAAAACAACTTGGCGCTGTTTTCTCGTGGACAGGCCGCAC  500

seq1  CGCTGACTGCTTGGAGGAGCTCTGGGAGGTAGCCACAGAGCACAGCTAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACTGCTTGGAGGAGCTCTGGGAGGTAGCCACAGAGCACAGCTAGG  550

seq1  GCCTTGACAGAGCACTAGAACTCGGTGTGAAACAGCGCACAGGCCTTCTG  598
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  GCCTTGACAGAGCACTAGAACTCGGTGTGAAACAGCGCACAGGCTTTTTG  600

seq1  GTCACCTACTCTTCACTTCTGAGTTCCAAAGGAACTGCATGGCGGCAGTC  648
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  GTCACCTACTCTTCACTTCTGAGTTTCAAAGGAACTGCATGGC-GCAGTC  649

seq1  TCAGCAGTCTCAGCACAAAACCACAGACAGGGGTGGTGGGAAATACCGAT  698
      |||||||||||||||| |||||||||||||||  |||||||||| |||||
seq2  TCAGCAGTCTCAGCACCAAACCACAGACAGGGTGGGTGGGAAATTCCGAT  699

seq1  GCAGAAGTTTCCCCAGGACGCCCACCACCGCCAT  732
      ||| |||||||||||||| | |||| ||||||||
seq2  GCAAAAGTTTCCCCAGGAAGGCCACTACCGCCAT  733

seq1: chr1_113194207_113195347
seq2: B6Ng01-085A20.g_69_1203 (reverse)

seq1  CTAATGAGCTTTCACG-AAGCTACTAGAACTGATCTAAAATTTCAGTTGA  49
      ||||||||||| |||| ||||||||| ||| ||||||||||||||| |||
seq2  CTAATGAGCTTCCACGAAAGCTACTA-AACGGATCTAAAATTTCAG-TGA  48

seq1  CCATTATCACACTTACAGTAATCATTTTTCTTTTCAATTGTTCTTGCAAT  99
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  CCATTATCACACTTACAGTATCAATTTTTCTTTTCAATTGTTCTTGCAAT  98

seq1  GCCAATGTTATTTGCAATGTTATAAAGATTGATAGTATAATATCCATGTA  149
      ||| |||||| |||| |||||||||||||||||||||| |||||||||| 
seq2  GCC-ATGTTA-TTGC-ATGTTATAAAGATTGATAGTAT-ATATCCATGT-  143

seq1  ATATGGTGACTTCCAAGTGAGAAATTTAGATAGAAAGAAGTGCTATTTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGACTTCCAAGTGAGAAATTTAGATAGAAAGAAGTGCTATTTGC  193

seq1  TGTTAAATTCTCACTCAATTTTAACTCACTTTAGAATGAGATGAATGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATTCTCACTCAATTTTAACTCACTTTAGAATGAGATGAATGTCA  243

seq1  ATGAGCTAAAGTTGGTGTAAAATTAAGTATGTGATGTTTCATTAATAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAAAGTTGGTGTAAAATTAAGTATGTGATGTTTCATTAATAGGT  293

seq1  TGCAAGTTATTCTGTAACAGTACAAAATACTTTTTAGTTTACTGTCCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTATTCTGTAACAGTACAAAATACTTTTTAGTTTACTGTCCTTG  343

seq1  GAAGTCCAAAATGTCCCACACTTCTAGCCTTTTACAATTGCCTTATTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCAAAATGTCCCACACTTCTAGCCTTTTACAATTGCCTTATTCTC  393

seq1  CCACACAGAGAAAACACAAAATGTCTCAAATATGAGCTACTCACCCTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGAGAAAACACAAAATGTCTCAAATATGAGCTACTCACCCTACT  443

seq1  CTCTGTCATTTATTGAGGATATTAGGCTATAGATAGAAATTTATACCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATTTATTGAGGATATTAGGCTATAGATAGAAATTTATACCTTC  493

seq1  TCATTTTCTTTTCTAGATTATGTGTTTTTGTTGAGTCCACATGATCATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTTTCTAGATTATGTGTTTTTGTTGAGTCCACATGATCATCA  543

seq1  ATGACATGAGGTAGCTATGATTATTTGTCAGAAATAATATCTCACCAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGAGGTAGCTATGATTATTTGTCAGAAATAATATCTCACCAATT  593

seq1  TAATTATACAGAACAATACTTTTCTATAGTCTGCCTCTTTTTAGAGTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACAGAACAATACTTTTCTATAGTCTGCCTCTTTTTAGAGTCCC  643

seq1  CTTACTCTTATTCTCTGATTTATCTCAGTAGATTCATTCATAGTAGACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTTATTCTCTGATTTATCTCAGTAGATTCATTCATAGTAGACCA  693

seq1  AGAACCACTGGCAATATGTTCTGAATCCTCAGTTTCATCTGTCTGTATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACTGGCAATATGTTCTGAATCCTCAGTTTCATCTGTCTGTATTA  743

seq1  TAATTTGTGATACATCATGTAGTTCTCTTTCACAGAATACATTACAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGATACATCATGTAGTTCTCTTTCACAGAATACATTACAGTTC  793

seq1  AAAATGATGTTTAAGCTCTCATAAAAAATAGAATAGTCAAAAGCAGGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATGTTTAAGCTCTCATAAAAAATAGAATAGTCAAAAGCAGGTAA  843

seq1  ATAAATAGAAGTTATTTATCATTCTTATAAAACTGGAACCCATTATCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAAGTTATTTATCATTCTTATAAAACTGGAACCCATTATCAAG  893

seq1  GTATTATGCTGTTTAGGATTTTCTTGAGTCCTTTTTCCCTGAGGTGGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGCTGTTTAGGATTTTCTTGAGTCCTTTTTCCCTGAGGTGGGGA  943

seq1  GGTACATCTTTTTTATAAAATACTATTGAGAATATAACAGAAAATAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCTTTTTTATAAAATACTATTGAGAATATAACAGAAAATAGGAA  993

seq1  TATCTGTTTTATTATAAACAGCTCACAAAAGGGTTAAGAAAGTTCTAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTTATTATAAACAGCTCACAAAAGGGTTAAGAAAGTTCTAAGA  1043

seq1  GTCATTCTGATTTTCATTTACCCGGTGGCTAATAAAGTTGAACATCTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTGATTTTCATTTACCCGGTGGCTAATAAAGTTGAACATCTCTT  1093

seq1  TCAGTGCTTCTCAGGCATTTAAGGCTCCACATTTGAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTCTCAGGCATTTAAGGCTCCACATTTGAGAATTC  1135