BAC Information

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BAC

Clone NameB6Ng01-086D03
Chromosome1 (Build37)
Map Location 31,624,818 - 31,625,836
singlet/doubletsinglet
Overlap geneLOC624275
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086D03.bB6Ng01-086D03.g
ACCDH899659DH899660
length1,2451,018
definitionDH899659|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D03, 5' end.DH899660|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcggggcgccgaagaacccgggaactgtcatcac
accggcgcaaggaagatccctcgttcgcggggcagaatcagaaccgtggg
acaaaaggctctacaaggtacgtacaatcttgaaatttcttcagagttag
aagcccttttgattgtttgcacggcgattatgaggattgtcagcaaatgg
tagaatcggggcagaaagttctggacaaaattcaagaaagtctatcagag
gttgagcggggagagaaagtaaaagtagagaggaaacaaagtgcactgaa
gaatttaggcctttccacgggccttgagcccgaggaaaagagatataaag
gaaagaatgccttgggagagataagaaaaagggataaaaagggagagaag
aagggagatcaagctggagaggcacataaggaaaggagcctctacccgcc
actgggtgaatttaagcagctagctcttagtagctcagaaccagatgaag
gaattagcgcctctgaagaaacagactcggaggaggaagcagttcgttat
aagggagaaaggtaccagcaagataaaaggcgatctactcagtccagaaa
aaggcaaaaagcagctggcgaaagccagcttgctgctcggcctccggact
gtcggcttcagggtcctagtgcacctctgctttatgtgcagaggtagtgg
tcaatttttacctactcctcatgtaggggtaaaccctcgtggtgtcaggc
cattacaggtctggcaatggatgtcactcatatttcctcctttagagaaa
tcatatttacatgtttctatgacacctgctctggtggtatgtttgcccca
ccttaacaggtgaaaagcctcttcattgttataagcactgcctagaagtg
tgggagtgcttggggcagcccacattcttaaacggatatggggccagcat
atactctactaaatttcacatttgctcaatgagtactccttgacctgtct
tcttaatcctcattgtgaaggtgtggacgacaaagcaactctaaa
gaattcaattctttttaaaatgaggtactaaattaatgaaatttcactgg
tgaaaagtaagatgtctattaatgaattaaatttcaaagcccccttggtt
cactagtcacaaggaccctgagaagcaaactatttttcactgatgattct
ctttgttgtgtttaatataaaacatttcgaatttacaatgcttattttca
aaacagtctattttttagattagaaactgaacagttcatgtctaggtaca
taattactaaataattaaatttaataataatgaaatgaataatggtaatc
tatcatgccactatggtagctacacagtgaagtaggggtaagtgccaagt
caggaagtgaatccataaaaataagcacttatgagacccttaataaagtt
cctgtctcaactcgtgaataagagttgacatcatcaattccatgagtcct
ttaggactctatcctgtctaaattttagatacttgtctaatgtaattcga
tattaaatattctatggaattttggagatggggaccctccagaatgtacc
tgagccctgggaggttagagacacttaggactcaatgggagggaccttag
atgaaatgctgtacattagggagaaggaacttgtagagccctcctccagt
agaaagacagggcatcaagtgagggatggggttgccatctcacagtcaaa
actctgaccaataattgttcctgtctgaaagaactgcagggatggaaatg
aagaggagcctaaggaaaagaaagtccagagacaggcccaaagtgggatc
cagctgaaaggggaggtcccaaggcctgacactattactgaggctatgga
gcacttactcacaaaaagggacctatccttccatggtactgcaaacctct
tcagctccttgggtcctttctctagctccttcattggggaccctgttctc
agagttggtgagcatcagggggaggggatattgggttttcatagaggaac
cagaaagggataacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31624818_31625836
seq2: B6Ng01-086D03.g_66_1080

seq1  GAATTCAATTCTTTTTAAAATGAGGTACTAAATTAATGAAATTTCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTTTTTAAAATGAGGTACTAAATTAATGAAATTTCACTGG  50

seq1  TGAAAAGTAAGATGTCTATTAATGAATTAAATTTCAAAGCCCCCTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTAAGATGTCTATTAATGAATTAAATTTCAAAGCCCCCTTGGTT  100

seq1  CACTAGTCACAAGGACCCTGAGAAGCAAACTATTTTTCACTGATGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCACAAGGACCCTGAGAAGCAAACTATTTTTCACTGATGATTCT  150

seq1  CTTTGTTGTGTTTAATATAAAACATTTCGAATTTACAATGCTTATTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTGTTTAATATAAAACATTTCGAATTTACAATGCTTATTTTCA  200

seq1  AAACAGTCTATTTTTTAGATTAGAAACTGAACAGTTCATGTCTAGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTATTTTTTAGATTAGAAACTGAACAGTTCATGTCTAGGTACA  250

seq1  TAATTACTAAATAATTAAATTTAATAATAATGAAATGAATAATGGTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTAAATAATTAAATTTAATAATAATGAAATGAATAATGGTAATC  300

seq1  TATCATGCCACTATGGTAGCTACACAGTGAAGTAGGGGTAAGTGCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCCACTATGGTAGCTACACAGTGAAGTAGGGGTAAGTGCCAAGT  350

seq1  CAGGAAGTGAATCCATAAAAATAAGCACTTATGAGACCCTTAATAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGAATCCATAAAAATAAGCACTTATGAGACCCTTAATAAAGTT  400

seq1  CCTGTCTCAACTCGTGAATAAGAGTTGACATCATCAATTCCATGAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAACTCGTGAATAAGAGTTGACATCATCAATTCCATGAGTCCT  450

seq1  TTAGGACTCTATCCTGTCTAAATTTTAGATACTTGTCTAATGTAATTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTCTATCCTGTCTAAATTTTAGATACTTGTCTAATGTAATTCGA  500

seq1  TATTAAATATTCTATGGAATTTTGGAGATGGGGACCCTCCAGAATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATATTCTATGGAATTTTGGAGATGGGGACCCTCCAGAATGTACC  550

seq1  TGAGCCCTGGGAGGTTAGAGACACTTAGGACTCAATGGGAGGGACCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTGGGAGGTTAGAGACACTTAGGACTCAATGGGAGGGACCTTAG  600

seq1  ATGAAATGCTGTACATTAGGGAGAAGGAACTTGTAGAGCCCTCCTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCTGTACATTAGGGAGAAGGAACTTGTAGAGCCCTCCTCCAGT  650

seq1  AGAAAGACAGGGCATCAAGTGAGGGATGGGGTTGCCATCTCACAGTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGGGCATCAAGTGAGGGATGGGGTTGCCATCTCACAGTCAAA  700

seq1  ACTCTGACCAATAATTGTTCCTGTCTGAAAGAACTGCAGGGATGGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACCAATAATTGTTCCTGTCTGAAAGAACTGCAGGGATGGAAATG  750

seq1  AAGAGGAGCCTAAGGAAAAGAAAGTCCAGAGACAGGCCCAAAGTGGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCCTAAGGAAAAGAAAGTCCAGAGACAGGCCCAAAGTGGGATC  800

seq1  CAGCTG-AAGGGGAGGTCCCAAGGCCTGACACTATTACTGAGGCTATGGA  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAAGGGGAGGTCCCAAGGCCTGACACTATTACTGAGGCTATGGA  850

seq1  GCACTTACTCACAAAAAGGGACCTATCCTTCCATGGTACTGCAAACCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACTCACAAAAAGGGACCTATCCTTCCATGGTACTGCAAACCTCT  900

seq1  TCAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCTC  950

seq1  AGAGTTGGTGAGCAATCAGGGGGGAGGGGATATTGGGTTTTCAGAGAGGA  999
      ||||||||||||| |||| |||||||||||||||||||||||| ||||| 
seq2  AGAGTTGGTGAGC-ATCA-GGGGGAGGGGATATTGGGTTTTCATAGAGG-  997

seq1  AACCAGGAAAAGGGATAACA  1019
      ||||||  ||||||||||||
seq2  AACCAG--AAAGGGATAACA  1015