BAC Information

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BAC

Clone NameB6Ng01-086M19
Chromosome1 (Build37)
Map Location 52,452,458 - 52,453,646
singlet/doubletsinglet
Overlap genenone
Upstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M19.bB6Ng01-086M19.g
ACCDH900101DH900102
length1,1701,196
definitionDH900101|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M19, 5' end.DH900102|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctacacaaaggcttccttttcgtcctcatcctaaccagcat
tgaggagtgtgtcagaggagttcgattcccagctacagtgtaggcaaagt
ataagaacaagctaacttgaccaaaactaggacttcaagatacatatacc
tgctttatgtggctgcagccacttcagctgattcccacataacaatggct
ctttccataccatgatgaaaatactgaacaggacagaaacacatcaaacc
ttctgcatacacaatcatatcattagcttagatattttgtcaagaattaa
tgtttggacaaagaccactataaaaacccacaatcaatatgcagagtcct
ggaccccagtcccaatagatacatctacaaaacactcccatacccaacgc
tcatggagctcttcagaagagggatggaaagattgtaagagccaaagaat
caagaaactttgctgtgagattgtgtctccatttgacatgagaagcctta
cctatcaagcctcaccaacatggctgccctaatgtgatctgaacaaagat
gacaccaataagcttgccaaactgggcagggaaaagtgcactggattcca
gccctatgctaaggatcacaggcaactgggcagagctgggaataagggag
gtggccctccccagggagcagcccaccaatcggttgtctagtgccaaatg
gtcaggccagaaaaatatatacaagtaacattatatggtttcaagaggtt
atgtttaggaatgtatatacaaatacatatatttatgcaataacaattga
tgaaaaaaaggccatgaatttgaaggagaatggaaggggtgcatgagtgg
gtttggagaaaggaaagtgaatggagaaatgtagaaattaagatacaatc
ccaaaaataaaagagaaagaattaatacttggctacgacaataaaacaca
aatggttttaaacaaattaggatttattattcaaacacacaaaagtggtc
aaaatgtaggatatggtctgagcccaggcatagcctcttttcagcttccc
ccatccttatagtgagagcctcatctcatgctctgagacagctgtctgca
gcttacactgtgccatcatcttcaggccaggtgaagtgcagcgacaagaa
aagaacgaacctgctgactt
gaattcctacagctgataaacaacttcatcaaagtggctagatataaaaa
ttaactcaaacaaaacaatagccttcctctactgaaaggataaacagact
gagaaagaaattagggtaatgacacccttcacaatagtcacaaataatat
aaaatatcttggtgtggctctaaccaagcaagtgaaaggtctgaatgaca
agaatttaaagtctctgaagaaagaaattgaagaagatctcagaagatga
aaagacctcccatgatcatggattggtaggattaatatagtaaaaatgtt
catcttgccaaaaacaatctacagattcgatgcaattcccattaaaattt
caactcaattcttcataggcttagaacaatttgcaaattcatttggaata
accaaaaacccaggaaagtgaaaactattctcaacaataaaagaacttct
gggggaaatcaccatgcctgacctcaagctgtattacagagcaattgtga
taaaaactgcatggtattggcattgagagaggcaagtagatcaatggaaa
agaattgaagatccataaatgaatccacacacctatggtcacttgatagt
tgacaaagctaaaaccatccagtggaaaaaagagggcattttcaacaaat
gatgctagtttaactggtggtcagcatgtagaggaatgcaaattgatcca
ttcttatctctttgtaaaaaactcatgtccaagcagataaaggacctcca
cataaaatcagatatactgaatcttatagaagagaaagtagggaagagcc
tagaacacatgagcacacgggaaaattttctgatcagaacaacaatggct
tatactttaagatcaacaatagataaatgggacctcataaaattgcaaag
cttctgaaaggcaaaggacactgtcaatagcacacaatggcagccaacag
attgggaaagatctttaccaacctacatccaatagagggataatatcaat
atataaaaaagactcagaagtcagactccagagaaccaataaccctataa
aatgaggtacaggctaaacaagaatctcactgaggaatctcgaatggctg
tgagcacctaagaatgttcagtgtccttagtatcagatgccaatcagatg
aacctggaaattcaacttcaaacaaggtctcgaaaatagagctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52452458_52453646
seq2: B6Ng01-086M19.b_47_1216

seq1  GAATTCACTCTACACAAAGGCTTCCTTTTCGTCCTCATCCTAACCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTACACAAAGGCTTCCTTTTCGTCCTCATCCTAACCAGCAT  50

seq1  TGAGGAGTGTGTCAGAGGAGTTCGATTCCCAGCTACAGTGTAGGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTGTGTCAGAGGAGTTCGATTCCCAGCTACAGTGTAGGCAAAGT  100

seq1  ATAAGAACAAGCTAACTTGACCAAAACTAGGACTTCAAGATACATATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACAAGCTAACTTGACCAAAACTAGGACTTCAAGATACATATACC  150

seq1  TGCTTTATGTGGCTGCAGCCACTTCAGCTGATTCCCACATAACAATGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGTGGCTGCAGCCACTTCAGCTGATTCCCACATAACAATGGCT  200

seq1  CTTTCCATACCATGATGAAAATACTGAACAGGACAGAAACACATCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATACCATGATGAAAATACTGAACAGGACAGAAACACATCAAACC  250

seq1  TTCTGCATACACAATCATATCATTAGCTTAGATATTTTGTCAAGAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATACACAATCATATCATTAGCTTAGATATTTTGTCAAGAATTAA  300

seq1  TGTTTGGACAAAGACCACTATAAAAACCCACAATCAATATGCAGAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGACAAAGACCACTATAAAAACCCACAATCAATATGCAGAGTCCT  350

seq1  GGACCCCAGTCCCAATAGATACATCTACAAAACACTCCCATACCCAACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGTCCCAATAGATACATCTACAAAACACTCCCATACCCAACGC  400

seq1  TCATGGAGCTCTTCAGAAGAGGGATGGAAAGATTGTAAGAGCCAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGCTCTTCAGAAGAGGGATGGAAAGATTGTAAGAGCCAAAGAAT  450

seq1  CAAGAAACTTTGCTGTGAGATTGTGTCTCCATTTGACATGAGAAGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACTTTGCTGTGAGATTGTGTCTCCATTTGACATGAGAAGCCTTA  500

seq1  CCTATCAAGCCTCACCAACATGGCTGCCCTAATGTGATCTGAACAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAGCCTCACCAACATGGCTGCCCTAATGTGATCTGAACAAAGAT  550

seq1  GACACCAATAAGCTTGCCAAACTGGGCAGGGAAAAGTGCACTGGATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAATAAGCTTGCCAAACTGGGCAGGGAAAAGTGCACTGGATTCCA  600

seq1  GCCCTATGCTAAGGATCACAGGCAACTGGGCAGAGCTGGGAATAAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGCTAAGGATCACAGGCAACTGGGCAGAGCTGGGAATAAGGGAG  650

seq1  GTGGCCCTCCCCAGGGAGCAGCCCACCAATCGGTTGTCTAGTGCCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTCCCCAGGGAGCAGCCCACCAATCGGTTGTCTAGTGCCAAATG  700

seq1  GTCAGGCCAGAAAAATATATACAAGTAACATTATATGGTTTCAAGAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCAGAAAAATATATACAAGTAACATTATATGGTTTCAAGAGGTT  750

seq1  ATGTTTAGGAATGTATATACAAATACATATATTTATGCAATAACAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGGAATGTATATACAAATACATATATTTATGCAATAACAATTGA  800

seq1  TGAAAAAAAGGCCATGAATTTGAAGGAGAATGGAAGGGGTGCATGAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAGGCCATGAATTTGAAGGAGAATGGAAGGGGTGCATGAGTGG  850

seq1  GTTTGGAGAAAGGAAAGTGAATGGAGAAATGTAGAAATTAAGATACAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGAAAGGAAAGTGAATGGAGAAATGTAGAAATTAAGATACAATC  900

seq1  CCAAAAATAAAAGAGAAAAGAATTAATACTTGGCTACGGACAATAAAAAC  950
      ||||||||||||||| ||||||||||||||||||||| |||||| |||||
seq2  CCAAAAATAAAAGAG-AAAGAATTAATACTTGGCTAC-GACAAT-AAAAC  947

seq1  ACAAATGGTTTTAAACAAATTAGGATTTTATTATTCAAACACACAAAAGG  1000
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  ACAAATGGTTTTAAACAAATTAGGA-TTTATTATTCAAACACACAAAA-G  995

seq1  TGGTTCAAAATGTAGGATATGGTCTGAGCCCCAGGCATAAGCCTCTCTTC  1050
      ||| |||||||||||||||||||||||| ||||||||| ||||||| || 
seq2  TGG-TCAAAATGTAGGATATGGTCTGAG-CCCAGGCAT-AGCCTCT-TTT  1041

seq1  CAGCTTTCCCCCCATCCTTATAGTGAGAGCCTCATCTCATGCTCTGAGAC  1100
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTT--CCCCCATCCTTATAGTGAGAGCCTCATCTCATGCTCTGAGAC  1089

seq1  AGCTG-CTGCAGCTTTACCCACCCTGTGCATTCATCTTCAGCCACGAGTG  1149
      ||||| |||||||||     || ||||||  |||||||||| | |  |||
seq2  AGCTGTCTGCAGCTT-----ACACTGTGCCATCATCTTCAGGC-CAGGTG  1133

seq1  AGTGGCAGGCAGACAGAGAAAGGCACCGACCTGCTGACTT  1189
      |   ||||   |||| ||||| | ||  ||||||||||||
seq2  AAGTGCAG--CGACA-AGAAAAGAACGAACCTGCTGACTT  1170