BAC Information

Click to search

BAC

Clone NameB6Ng01-086O01
Chromosome1 (Build37)X (Build37)
Map Location 69,031,431 - 69,032,45591,737,541 - 91,737,790
singlet/doubletsingletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O01.bB6Ng01-086O01.g
ACCDH900158DH900159
length1,019638
definitionDH900158|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O01, 5' end.DH900159|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,031,431 - 69,032,455)(91,737,541 - 91,737,790)
sequence
gaattccatttgatctgaaagagatctcaagttggaccaggagtgagata
cttactaaccctcaagaatcagctcaagtgctcagatcatgaaccattta
ttcttctgtatcaacctttgctgtggaataatcacatattctttatattg
tgtgtgatttacattcacattacatttctggtcaatatgtctatgtcaat
caaatattggtttactaagacgatgctgttctctttgtcgatgctgttct
ctttatacagttaagcaagtttgaccttcaagtagaatctattctacaat
tcttatggagacagaaccttaggtttttctatagtgatacatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatactaactctataaggagagacacaca
tagaaaatataaagaacatcaactagaaaaaaaaaggctcagtccttgaa
gatgaaacagtcacgttgtggctgattctcactggtttgaatcataattt
taatcagtggtaaatcataaaatggggcaaaagaactggaggataaaaga
tattctcaaaggcatggatactagatttgatctatcaaggaaagtatgag
gagagtaagcacagataaaagttaaatgattcaaagaggcctcagatgaa
agtaaattatagactcatttatgtggcttctcttctgtgtaaccttataa
ctgattaataggaaacactgagtgtctttatacagggacaacagtcttca
ttcatatatactatcagcatgactaaactaaatagtttaaagtactctag
cctatttggttataaaatttttctaatgaaacccatgactaatgatgcat
ttacaaatggcaaacatattaggggaggaataacatttacctccctgagc
cggaattatcaaaagagaacctaaacacctcgtgccgaaaagttcatgtt
attatagatggggaatttc
gaattcttgactatgctgaacaaggctgtcattcaatctccaacactaca
taatagaaaagctagaatctaacaaacctgatatttggctagagtgatat
atgcagaataaaagattaagggacatttttgcatgcagttgggaaagaaa
ataaagtataggctgtgttcctagaaagtttttttgtcttcagttgtatg
aaggaaggagatgaaggaagatttagagatagaatgtagcagaggatggc
ctagtcggccatcagtgggagtaaaggcccttggtcttgccaagatcata
tgccccaatacagggaaatgccagggccaggagcaggagtgggtttgttg
gggaacagggcagggggagagtataggggactttggggataacatttgaa
atgtaaatgaagaaaatatctaactaaaatgtatttagttttcgtgtcca
atgggcctctctttccagtgatggccgactaggccatcttttgatacaga
tgcatctagagtcaagagctccggggtactggttagttcataatgttgtt
ccacctatagggttgcagatcccttttagctccttaggtacttttctcta
gctcctccattgggagccctgtgatccatccattagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69031431_69032455
seq2: B6Ng01-086O01.b_48_1066

seq1  GAATTCCATTTGATCTGAAAGAGATCTCAAGTTGGACCAGGAGTGAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGATCTGAAAGAGATCTCAAGTTGGACCAGGAGTGAGATA  50

seq1  CTTACTAACCCTCAAGAATCAGCTCAAGTGCTCAGATCATGAACCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAACCCTCAAGAATCAGCTCAAGTGCTCAGATCATGAACCATTTA  100

seq1  TTCTTCTGTATCAACCTTTGCTGTGGAATAATCACATATTCTTTATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTATCAACCTTTGCTGTGGAATAATCACATATTCTTTATATTG  150

seq1  TGTGTGATTTACATTCACATTACATTTCTGGTCAATATGTCTATGTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTTACATTCACATTACATTTCTGGTCAATATGTCTATGTCAAT  200

seq1  CAAATATTGGTTTACTAAGACGATGCTGTTCTCTTTGTCGATGCTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGGTTTACTAAGACGATGCTGTTCTCTTTGTCGATGCTGTTCT  250

seq1  CTTTATACAGTTAAGCAAGTTTGACCTTCAAGTAGAATCTATTCTACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACAGTTAAGCAAGTTTGACCTTCAAGTAGAATCTATTCTACAAT  300

seq1  TCTTATGGAGACAGAACCTTAGGTTTTTCTATAGTGATACATATATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGAGACAGAACCTTAGGTTTTTCTATAGTGATACATATATATAT  350

seq1  ATATATATATATATATATATATATATATATATATATATATATAT-TCAAA  399
      |||||||||||||||||||||||||||||||||||||||||||| |  | 
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  400

seq1  CTGGCTGGGACTTGAGAGATA-ATACTAACTCAACAAAGGAGAGACACAC  448
       |   |     |  | | ||| |||||||||| |  ||||||||||||||
seq2  ATATATATATATATATATATATATACTAACTCTA-TAAGGAGAGACACAC  449

seq1  ATAGAAAATATAAAGAACATCAACTAGAAAAAAAAAGGCTCAGTCCTTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATATAAAGAACATCAACTAGAAAAAAAAAGGCTCAGTCCTTGA  499

seq1  AGATGAAACAGTCACGTTGTGGCTGATTCTCACTGGTTTGAATCATAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAACAGTCACGTTGTGGCTGATTCTCACTGGTTTGAATCATAATT  549

seq1  TAAATCAGTGGTAAATCATAAAATGGGGCAAAAGAACTGGAGGATAAAAG  598
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTGGTAAATCATAAAATGGGGCAAAAGAACTGGAGGATAAAAG  599

seq1  ATATTCTCAAAGGCATGGATACTAGATTTGATCTATCAAGGAAAGTATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCAAAGGCATGGATACTAGATTTGATCTATCAAGGAAAGTATGA  649

seq1  GGAGAGTAAGCACAGATAAAAGTTAAATAATTCAAAGAGGCCTCAGATGA  698
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAGAGTAAGCACAGATAAAAGTTAAATGATTCAAAGAGGCCTCAGATGA  699

seq1  AAGTAAATTATAGACTCATTTATGTGGCTTCACTTCTGTGTAACCTTATA  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTAAATTATAGACTCATTTATGTGGCTTCTCTTCTGTGTAACCTTATA  749

seq1  ACTGATTAATAGGAAACACTGAGTGTCTTTATACAGGGACAACAGTCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAATAGGAAACACTGAGTGTCTTTATACAGGGACAACAGTCTTC  799

seq1  ATTCATATTTACTATCAGCCATGACTAAACTAAATAGTTTAAAAGTTACT  848
      |||||||| ||||||||| ||||||||||||||||||||||||   ||||
seq2  ATTCATATATACTATCAG-CATGACTAAACTAAATAGTTTAAA--GTACT  846

seq1  CTAGCCTATTTGGTTATAAAA-TTTTCTAATGAAACCCATGACTAAATGA  897
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  CTAGCCTATTTGGTTATAAAATTTTTCTAATGAAACCCATGACT-AATGA  895

seq1  TGCCATATAACAAATGGCAAACATATTTAGGGAGGGATAACAATTACCAC  947
      || ||| | ||||||||||||||||||  |||||| |||||| ||||| |
seq2  TG-CAT-TTACAAATGGCAAACATATTAGGGGAGGAATAACATTTACCTC  943

seq1  ACTGAGCTGTAATTATGAAAAGAGAACCAAAACACCTACATGCAGAAAAG  997
       |||||| | |||||| ||||||||||| |||||||| | ||| ||||||
seq2  CCTGAGCCGGAATTATCAAAAGAGAACCTAAACACCT-CGTGCCGAAAAG  992

seq1  TTCATGTCAATATAGATGGGGAAGTTTC  1025
      ||||||| | ||||||||||||| ||||
seq2  TTCATGTTATTATAGATGGGGAA-TTTC  1019

seq1: chrX_91737541_91737790
seq2: B6Ng01-086O01.g_298_493 (reverse)

seq1  TTTTAATTAGATATTTTCTTCATTTACATTTCTTATTTCTGTTTTGTTTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGAACATTTTTTATTAGA---TTTTTTCATTTACATTTCAAATGTTATCC  97
             ||||  |||||   ||| |||||||||||||||||||||||||
seq2  -------TTTTAGTTAGATATTTTCTTCATTTACATTTCAAATGTTATCC  43

seq1  CCAAAGCCCCCTATAATGTCCCCCCACCCTGCT-CCCATCCCACCCACTC  146
      |||||| |||||||| | ||||||  ||||| | |||| |  ||||||||
seq2  CCAAAGTCCCCTATACTCTCCCCCTGCCCTGTTCCCCAACAAACCCACTC  93

seq1  CTGCTTTCTGGCCCTGGCATTCCCCTGTACTGGGGCACATGATCTTGGCA  196
      |||| | |||||||||||||| ||||||| ||||||| ||||||||||||
seq2  CTGC-TCCTGGCCCTGGCATTTCCCTGTATTGGGGCATATGATCTTGGCA  142

seq1  AGACCAAGGGCTTCTCCTCCCATTGATGGCCAACTAGGCCATCCTCTGCT  246
      ||||||||||| | | |||||| |||||||| ||||||||||||||||||
seq2  AGACCAAGGGCCTTTACTCCCACTGATGGCCGACTAGGCCATCCTCTGCT  192

seq1  ACAT  250
      ||||
seq2  ACAT  196