BAC Information

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BAC

Clone NameB6Ng01-086O18
Chromosome1 (Build37)3 (Build37)
Map Location 175,176,206 - 175,176,600141,385,801 - 141,386,307
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
Downstream geneOlfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O18.bB6Ng01-086O18.g
ACCDH900190DH900191
length389934
definitionDH900190|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O18, 5' end.DH900191|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(175,176,206 - 175,176,600)(141,385,801 - 141,386,307)
sequence
catagaagaggaaatacagagagtgtaagagccagaggagatgcaggaca
gcaagaaaacaaggccttctaaatcaacaggaacaaaactcatagcactc
acagagactgccacagtatgcacaggacttggactggtctgcaccagatc
ctcagtgtttatattatggctttgagtttagtgtttttatgggattcctg
actgtgtaaatgagtggatttctgaatgttgtgggttctcttaggatctt
ttcagtctgttggtttgttttgtccaacttcattgagatagtttttgttt
tactttaatatattttattttcttatagttaaaaaatgaatgaataatga
aagaaagaaagaattgaaaggaagggagggagagaggga
gaattccaggatagccagggctacacagagaaaccctgtctcgaaaaaca
aaaacaaacaaacaaacaaacaaaaaaacagtgtgaggaactgaattgat
aaggatggcagacaagagaggaaagagaaaatcatatcacatgaaaggtt
gaatatggaggagggaaactgaggctgccaagggcaagagcctatattaa
tagaaccactgcagcctcaagacctgcagtaaaagtccaatatagctaat
aaggcgatcaattcttcattaaaagacctgcacctctcagcccatggtca
aaaacagtaatgggacttaaattatgtctttgtatgctactaggaagaag
aagaagaaaaaaaaaaaactaaaaagctggggttgaattgtcttagccag
tgctctattactatcaagagacaccatcaccatgacaactcttataaagg
aagcatttaattgggacttgtctatatttcagaaatttattattgccatg
gcagggagcatggcatagtgctggtagacatggtgctgaaaaagtacctg
agagttctatatccatatatgcaacaatggatagagagagcctctgggcc
ttgatagaacctagcggggaaacccccactcaattcccgattcggcgtgc
acccaaaaaaatcatgaaggaccatcttgatgtaattacatgaggtcgtt
taattacggagctccggaccgacatgcatcccacacaggagataatggat
gttggccacgaggctcgaaagctaggggtttttacagggtaaggggctta
ggggtgtggaattgcatagcgacacactactgccttattcaaacatcagc
agaaaaattacatgtacgtgcagggtgtcagagttctgtgagttgttgac
tcagtttagatagccctgttatgtcctcacattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175176206_175176600
seq2: B6Ng01-086O18.b_47_441

seq1  GAATTCCATAGAAGAGGAAATACAGAGAGTGTAAGAGCCAGAGGAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAAGAGGAAATACAGAGAGTGTAAGAGCCAGAGGAGATGC  50

seq1  AGGACAGCAAGAAAACAAGGCCTTCTAAATCAACAGGAACAAAACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCAAGAAAACAAGGCCTTCTAAATCAACAGGAACAAAACTCATA  100

seq1  GCACTCACAGAGACTGCCACAGTATGCACAGGACTTGGACTGGTCTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACAGAGACTGCCACAGTATGCACAGGACTTGGACTGGTCTGCAC  150

seq1  CAGATCCTCAGTGTTTATATTATGGCTTTGAGTTTAGTGTTTTTATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCAGTGTTTATATTATGGCTTTGAGTTTAGTGTTTTTATGGGA  200

seq1  TTCCTGACTGTGTAAATGAGTGGATTTCTGAATGTTGTGGGTTCTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACTGTGTAAATGAGTGGATTTCTGAATGTTGTGGGTTCTCTTAG  250

seq1  GATCTTTTCAGTCTGTTGGTTTGTTTTGTCCAACTTCATTGAGATAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTCAGTCTGTTGGTTTGTTTTGTCCAACTTCATTGAGATAGTTT  300

seq1  TTGTTTTACTTTAATATATTTTATTTTCTTATAGTTAAAAAATGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACTTTAATATATTTTATTTTCTTATAGTTAAAAAATGAATGAA  350

seq1  TAATGAAAGAAAGAAAGAATTGAAAGGAAGGGAGGGAGAGAGGGA  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGAAAGAAAGAATTGAAAGGAAGGGAGGGAGAGAGGGA  395

seq1: chr3_141385801_141386307
seq2: B6Ng01-086O18.g_71_437

seq1  TTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAGCAAAA  50
      |||||||| |||||| |||| ||||||||||||||||||||||| | |||
seq2  TTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAC-AAA  49

seq1  AACAAACAAACAAACAAAAACAAAAACA--AACAAAAACAAAAAAGAATT  98
      |||||||||||||||||| | |||||||     |  |||  ||  ||  |
seq2  AACAAACAAACAAACAAACAAAAAAACAGTGTGAGGAACTGAATTGA--T  97

seq1  AAGGTT-----ACAA-AGAAAATAGTCAAAATCTATTAGCTTCCCTCCTT  142
      |||| |     |||| |||  | ||  |||||| ||             |
seq2  AAGGATGGCAGACAAGAGAGGAAAGAGAAAATC-AT------------AT  134

seq1  CCTCTTAAAGTACTGTTTTGAAAAATCCATATTCTTAATCTGTGCCTGTG  192
      |   | ||||       |||||                            
seq2  CACATGAAAG------GTTGAA----------------------------  150

seq1  TTATAGACACTGCTATTACCCAGGAACCATCTGAGGCAGGTCCTGTCATC  242
       ||| ||              ||| |  | ||||||      ||| ||  
seq2  -TATGGA------------GGAGGGA--AACTGAGG------CTGCCAAG  179

seq1  ATTTACACTCTATCAATAATAAAA----TGGAGATGTGGAAACATG-AGA  287
          | |  |||| | ||||| ||    || ||   |  | || || || 
seq2  GGCAAGAGCCTAT-ATTAATAGAACCACTGCAG-CCTCAAGACCTGCAGT  227

seq1  AAAATTGCCTGACCATCTGTTTTGATAGATATGATATGTACGGAACATTT  337
      ||||      | |||         ||| |  | ||| |    || || ||
seq2  AAAA------GTCCA---------ATATAGCTAATAAG--GCGATCAATT  260

seq1  CCTCACTGTA--ATCTCCATCACTCCACACAGCTACATGCACAGGAAGCA  385
      | ||| |  |  | || || | |||  | ||    ||   |||| ||   
seq2  CTTCATTAAAAGACCTGCACCTCTCAGCCCATGGTCAAAAACAGTAA---  307

seq1  ACTTTTGATTTTTCTGTCTAGCCCTTATAGCATTTTTGAGCAGTTGGTTT  435
                        | |  ||||    | || ||            
seq2  ------------------TGGGACTTA----AATTATG------------  323

seq1  GGTTGGTGGTTGGCTCTTTCTTGGCATTTACAATATTTTGAGAGGAAAGG  485
                    ||||| |  ||   ||| |           | ||| 
seq2  --------------TCTTTGTATGC---TACTA-----------GGAAGA  345

seq1  CAAATAAGAAAAAAAAAAAACT  507
        || |||||||||||||||||
seq2  AGAAGAAGAAAAAAAAAAAACT  367