BAC Information

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BAC

Clone NameB6Ng01-087G15
Chromosome1 (Build37)
Map Location 3,904,458 - 3,905,633
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G15.bB6Ng01-087G15.g
ACCDH900546DH900547
length1,2361,168
definitionDH900546|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G15, 5' end.DH900547|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatcttttcaagtcttttacatgaaggagggttagagattgt
caaatgctttctcatcatctaacaagatgataatgtggttagagttgaga
ttttgttctcatggctgtcttcttttaggtttgttgaaggattactttct
tgctttttctagggtgtcatttcccttcttgtgtttgagttttcccttta
ctatcctttgaagggcgggattcatggaaagatattatgtgaatttagtt
ttgtcatggaatactttggtttctccatctgtggtaattgagagttttgc
tgggtatagtagcctgggctggcatttgtgttctcctagtgtctgtataa
catctgtccaggatcttctggctttcatggcctctggtgagaagtctgga
gtaattctaataggactgcctttaaatgttacttgacctttttcccttaa
tgcttttaatagtctatccttattcagtggatttgttgttctgattatta
tgtgtcgggaggaatttcatttctggtccagtctatttggagtcctgtag
gcttcttgtattttcatgggcacctttttctttaagttagggacgttttc
ttctataattttgttgaagatacttactggctctttaagttgaaaatctt
cattctcatctatacctattatccttaggtttggtcttttcattatgtcc
tggatttcctggatgttttgcgttaggatctttttgcattttgcattttc
tttgattgttgtgtccatgttttctatggaatcttctgcacctgagattc
tctcttccatatcttgtattctgttgctgatgtttacatctatggttcct
gatttcttttctaggttttctatctccagagttgtctccctttgtgattt
atttattgtttctactgccattttatatccttaattgtttgttcaacttt
tcacctcttagctaatgttttcctgtaactctttaaggatttttgtattt
cctctttaaagctctagctgttgtctgttgtttgttggttttcctgattt
ctttctaagtctctcatcgtatcatgagagtgactttgatcatgcctgct
tttccgtgtgaagggtatcaggacttactatggggaagtttgatcgagga
gcacagcctggggatcgtgctcgtctagctgccctgaccatcgagtataa
gtgcgatgtgcgtgacgccccttacgtatcacgtag
gaattcagtaccccagaatttctcatcacagaaggaacaaaaaaaaaaaa
aaaaaaaaaaccaacaaccaaaaaaataatcatcttttcccctaatctta
agtttatacacaataccctttcacttagtaattcaaggtggcttcattag
tccaacatgtccagacaaaagatatgagcagagaacccttttctatgtat
ggccatacacagaagtctgttttagaataggtctatcatattgtttattc
agatggaggtggaagtggtctatttcagaccaagatgatttatttttacg
atagagaaatgaagactgtaagtcagaagttccttaaaaaggaagtgttt
agaaaggactctgccactatatttaatgactagccacatcaacaatgcct
gatcttagctagtacctgcaagacagaagtcatgaagataaaaaggagat
gtatagacagcttgacattaggaaaagagaaagttcaaattttaaaaact
agaaaaattaaaaagaagaaatacatatatgtgtgcatatacacatatgg
acatccactcacatgcaaagaaagatgttttctcaagtaacaaatatatt
tcttaagccaatcagggtggcacatgcctataattccagcacttgaaatg
gtgagggaatgggactttggggcatttgagatttgcctgggttacagagt
gagaccatttctcacaaatcaatcaatgatgaaccagtcagttcattaat
tcttctcacccagtctgctgagaaagtgatgcgggtggcaaaagatgata
agtccttttcagaagactgtttccctttttctgtgtgatataagatgacc
acagaatgactagtcctttgaattttaaggaaaaaaaaaaaaacaacagc
aacatggcttttacttattgggcctatcctccttaggtggcctttacaac
agataaggactcagaaggcacattgtcctaggagcttgagtttcaaggac
agcttccacacttgtgggaaaagaagaataggaagtggattctagcctgt
ggtcatgcacagatgattgatgcctcatgctgtacaaatgtataagcgca
gggcaggaaaaagctgatgatcttgtacagaatgctgggctgcaaaggag
cttccagctacagtccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3904458_3905633
seq2: B6Ng01-087G15.g_70_1237

seq1  GAATTCAGTACCCCAGAATTTCTCATCACAGAAGGAACAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACCCCAGAATTTCTCATCACAGAAGGAACAAAAAAAAAAAA  50

seq1  AAAAAAAAAACCAACAACCAAAAAAATAATCATCTTTTCCCCTAATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCAACAACCAAAAAAATAATCATCTTTTCCCCTAATCTTA  100

seq1  AGTTTATACACAATACCCTTTCACTTAGTAATTCAAGGTGGCTTCATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATACACAATACCCTTTCACTTAGTAATTCAAGGTGGCTTCATTAG  150

seq1  TCCAACATGTCCAGACAAAAGATATGAGCAGAGAACCCTTTTCTATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGTCCAGACAAAAGATATGAGCAGAGAACCCTTTTCTATGTAT  200

seq1  GGCCATACACAGAAGTCTGTTTTAGAATAGGTCTATCATATTGTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATACACAGAAGTCTGTTTTAGAATAGGTCTATCATATTGTTTATTC  250

seq1  AGATGGAGGTGGAAGTGGTCTATTTCAGACCAAGATGATTTATTTTTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGGAAGTGGTCTATTTCAGACCAAGATGATTTATTTTTACG  300

seq1  ATAGAGAAATGAAGACTGTAAGTCAGAAGTTCCTTAAAAAGGAAGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAATGAAGACTGTAAGTCAGAAGTTCCTTAAAAAGGAAGTGTTT  350

seq1  AGAAAGGACTCTGCCACTATATTTAATGACTAGCCACATCAACAATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACTCTGCCACTATATTTAATGACTAGCCACATCAACAATGCCT  400

seq1  GATCTTAGCTAGTACCTGCAAGACAGAAGTCATGAAGATAAAAAGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGCTAGTACCTGCAAGACAGAAGTCATGAAGATAAAAAGGAGAT  450

seq1  GTATAGACAGCTTGACATTAGGAAAAGAGAAAGTTCAAATTTTAAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGACAGCTTGACATTAGGAAAAGAGAAAGTTCAAATTTTAAAAACT  500

seq1  AGAAAAATTAAAAAGAAGAAATACATATATGTGTGCATATACACATATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTAAAAAGAAGAAATACATATATGTGTGCATATACACATATGG  550

seq1  ACATCCACTCACATGCAAAGAAAGATGTTTTCTCAAGTAACAAATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACTCACATGCAAAGAAAGATGTTTTCTCAAGTAACAAATATATT  600

seq1  TCTTAAGCCAATCAGGGTGGCACATGCCTATAATTCCAGCACTTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCAATCAGGGTGGCACATGCCTATAATTCCAGCACTTGAAATG  650

seq1  GTGAGGGAATGGGACTTTGGGGCATTTGAGATTTGCCTGGGTTACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATGGGACTTTGGGGCATTTGAGATTTGCCTGGGTTACAGAGT  700

seq1  GAGACCATTTCTCACAAATCAATCAATGATGAACCAGTCAGTTCATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATTTCTCACAAATCAATCAATGATGAACCAGTCAGTTCATTAAT  750

seq1  TCTTCTCACCCAGTCTGCTGAGAAAGTGATGCGGGTGGCAAAAGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACCCAGTCTGCTGAGAAAGTGATGCGGGTGGCAAAAGATGATA  800

seq1  AGTCCTTTTCAGAAGACTGTTTCCC-TTTTCTGTGTGATATAAGATGACC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCCTTTTCAGAAGACTGTTTCCCTTTTTCTGTGTGATATAAGATGACC  850

seq1  ACAGAATGACTAGTCCTTTGAATTTCAAGG-AAAAAAAAAAAACAACAGC  898
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  ACAGAATGACTAGTCCTTTGAATTTTAAGGAAAAAAAAAAAAACAACAGC  900

seq1  AACATGGCTTTTACTAATT-GGCCTATCCTCCTTAGGTGGCCTTTACAAC  947
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  AACATGGCTTTTACTTATTGGGCCTATCCTCCTTAGGTGGCCTTTACAAC  950

seq1  AGATAAGGACTCAGAAAGGCACATTGTCCTAGGAGCTTGAGTTTCCAAAG  997
      |||||||||||||| ||||||||||||||||||||||||||||||  |||
seq2  AGATAAGGACTCAG-AAGGCACATTGTCCTAGGAGCTTGAGTTTC--AAG  997

seq1  GACAAGCTTCCACACTTGT-GGAAAAGAAGAATAGGAAGTGGATTCTAGC  1046
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAC-AGCTTCCACACTTGTGGGAAAAGAAGAATAGGAAGTGGATTCTAGC  1046

seq1  CTGTGGTCATGCACAGATGATTGATG-CTCATGCTGTACATATGTATAAG  1095
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CTGTGGTCATGCACAGATGATTGATGCCTCATGCTGTACAAATGTATAAG  1096

seq1  CGCAGGAGCAGGAAAACAGCTGATGAACCCTGGTACCAGGATGCTGGGCT  1145
      |||||| ||||||||| |||||||||   || ||| ||| ||||||||||
seq2  CGCAGG-GCAGGAAAA-AGCTGATGA--TCTTGTA-CAGAATGCTGGGCT  1141

seq1  GCAGAAGGGGAGCTTCCCAGCTACAGTCCAC  1176
      ||| |   ||||||| |||||||||||||||
seq2  GCAAA---GGAGCTT-CCAGCTACAGTCCAC  1168