BAC Information

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BAC

Clone NameB6Ng01-088D04
Chromosome1 (Build37)
Map Location 58,225,961 - 58,392,997
singlet/doubletdoublet
Overlap geneAox3, Aox4, Aox3l1
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
Downstream geneEG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D04.bB6Ng01-088D04.g
ACCDH901120DH901121
length9551,122
definitionDH901120|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D04, 5' end.DH901121|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,225,961 - 58,227,142)(58,391,870 - 58,392,997)
sequence
gaattccaactgcagtcacctggaaatgaaaattaaggcttagccgaatg
agcacttattaaaaggagagaattagaacctagacattttgtaaaagaaa
aaaataagtggtgtgacttaacgtgaatgggtatttgaatagagaatgca
aggaattaaggaataaagttggacttgcatatcaacgagacaatgacacc
actaacattaatggagtgtggttacaagggggataatacagggcacacac
acacacacacacacacacacacacacacacacacacgtctcctttggttt
taagttccccaaattactctgggtgtggggggctggggggacgggaatct
aattcacagctcttaaccttttctaaaactttggagtccaatctgtagca
gccacaggcaggcttgcctgtgacaccagagaggaactccctcccttcct
gtaaacaaacgaacaaatgaacaaacatcttaagccttcaggaagtttcc
cagccacaccattcaccagggaacagcaaaaacctccccactcccttctc
tctcctgagtggctgcactctgattctttctcctttgcctgattgaatga
cagcaaacctgaactcactcgaatctcacatctgttacaattggaatctt
ttcttttctaggaccggccgcccaatacgtttcattctagagcgtaggga
tgacatgttgataactggaggacgtcacccactactcgggaaatacaagg
tgagtgggtggccacgtccctgcacagacgccactccaggggcctgtgtc
ttgcagctccagtcctttggagctctctgctcccccgtgcaggtggttgg
tgtgcatgctttggtcttaccaagcctcagtatcaccagcgtgacctgtg
agtcactgcacatagaagaaaaagagatactaatacagagactgggaata
tggca
gaattcactctgtagaacagtctggcctcgaactcagaaatccacctgcc
tctgcctcccaagcgtgtgcctccactgcccagctctgagtcctttcttt
ttagcaggcaattctggctccacacccagcatggaatcctcaagtttgtg
ctccactcccagaatgtaaatcgcctctctcattctcctgactcttgtaa
gattctccgccattctgtcctggctttctttctaatttagtttgtggttt
tctccacattggaaagtctctgggattccagagtgcatggagatgaatca
tgttatccctgtgacaggaaagtcttgggcgggaacagagggtggagaat
tcatgagctggacttgcctcactgggtggccaaggtgctttgtaaatagc
ggcataggtaatggatggtgcagcaatctaaggcagtggtaaaaccaggt
aggaaatcagctgtgtatgctcaaggaatgcctaataaagcatgttttgt
aaacttatatcaggacagaatgtcctaaggacgcagtcacaaattcaaaa
aatagcatcatctactagatgctgcaaacatatttaaacagtgtttctac
tgcagttgaaagaaaatggagtgacttgaataatttaaattcaccagtta
gtggacttctgttagagattattttgcaatgcaaaatggtcaagttgttt
ctaaatatttctacaacaaagtgctgttctcatagccatgatgtttggac
atcatctttctttttcttccccctctcctttgaggaatctctaaaaatat
aaatccttattccttttaatagtgccttcccgccttccccgtgtgtgtct
acatatgtgtgagtgcacatgtgtgtggtgccaaaggatatgtcagaagg
tctttcttgattttactttaatttatttactgaggcagagtttctgacag
acccagaccttacatttggctagtctttctagacagtgcttcagggaccc
ctgtcttctcctccgggtactggggttgctgcaggagcagcttcagtctc
ttaatctttacgtaggttctgggggatctatctcagtcctcagttctggc
atggtaagcttaagaccactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58225961_58227142
seq2: B6Ng01-088D04.b_44_1220

seq1  GAATTCCAACTGCAGTCACCTGGAAATGAAAATTAAGGCTTAGCCGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGCAGTCACCTGGAAATGAAAATTAAGGCTTAGCCGAATG  50

seq1  AGCACTTATTAAAAGGAGAGAATTAGAACCTAGACATTTTGTAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATTAAAAGGAGAGAATTAGAACCTAGACATTTTGTAAAAGAAA  100

seq1  AAAATAAGTGGTGTGACTTAACGTGAATGGGTATTTGAATAGAGAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGGTGTGACTTAACGTGAATGGGTATTTGAATAGAGAATGCA  150

seq1  AGGAATTAAGGAATAAAGTTGGACTTGCATATCAACGAGACAATGACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAAGGAATAAAGTTGGACTTGCATATCAACGAGACAATGACACC  200

seq1  ACTAACATTAATGGAGTGTGGTTACAAGGGGGATAATACAGGGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTAATGGAGTGTGGTTACAAGGGGGATAATACAGGGCACACAC  250

seq1  ACACACACACACACACACACACACACACACACACACGTCTCCTTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGTCTCCTTTGGTTT  300

seq1  TAAGTTCCCCAAATTACTCTGGGTGTGGGGGGCTGGGGGGACGGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCCCAAATTACTCTGGGTGTGGGGGGCTGGGGGGACGGGAATCT  350

seq1  AATTCACAGCTCTTAACCTTTTCTAAAACTTTGGAGTCCAATCTGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGCTCTTAACCTTTTCTAAAACTTTGGAGTCCAATCTGTAGCA  400

seq1  GCCACAGGCAGGCTTGCCTGTGACACCAGAGAGGAACTCCCTCCCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCAGGCTTGCCTGTGACACCAGAGAGGAACTCCCTCCCTTCCT  450

seq1  GTAAACAAACGAACAAATGAACAAACATCTTAAGCCTTCAGGAAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAACGAACAAATGAACAAACATCTTAAGCCTTCAGGAAGTTTCC  500

seq1  CAGCCACACCATTCACCAGGGAACAGCAAAAACCTCCCCACTCCCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACCATTCACCAGGGAACAGCAAAAACCTCCCCACTCCCTTCTC  550

seq1  TCTCCTGAGTGGCTGCACTCTGATTCTTTCTCCTTTGCCTGATTGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGGCTGCACTCTGATTCTTTCTCCTTTGCCTGATTGAATGA  600

seq1  CAGCAAACCTGAACTCACTCGAATCTCACATCTGTTACAATTGGAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACCTGAACTCACTCGAATCTCACATCTGTTACAATTGGAATCTT  650

seq1  TTCTTTTCTAGGACCGGCCGCCCAATACGTTTCATTCTAGAGCGTAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTAGGACCGGCCGCCCAATACGTTTCATTCTAGAGCGTAGGGA  700

seq1  TGACATGTTGATAACTGGAGGACGTCACCCACTACTCGGGAAATACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTGATAACTGGAGGACGTCACCCACTACTCGGGAAATACAAGG  750

seq1  TGAGTGGGTGGCCACGTCCCTGCACAGACGCCACTCCAGGGGCCTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGTGGCCACGTCCCTGCACAGACGCCACTCCAGGGGCCTGTGTC  800

seq1  TTGCAGCTCCAGTCCTTTGGAGCTCTCTGCTCCCCCGTGCAGGTGGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTCCAGTCCTTTGGAGCTCTCTGCTCCCCCGTGCAGGTGGTTGG  850

seq1  TGTGCATGCTTTGGTCTTACCAAGCCTCAGTATCACCAGCGTGACCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGCTTTGGTCTTACCAAGCCTCAGTATCACCAGCGTGACCTGTG  900

seq1  AGTCACTGCACATAGAAGAAAAAGAGATACTAATACAGAGACTGGGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGCACATAGAAGAAAAAGAGATACTAATACAGAGACTGGGAATA  950

seq1  TGGCAAAGATGAACAGAAACTGGCATTTGAAGGTCTCTCCATTCCTGGGA  1000
      |||||                 ||||||||||||||||||||||||||||
seq2  TGGCANNNNNNNNNNNNNNNNNGCATTTGAAGGTCTCTCCATTCCTGGGA  1000

seq1  CCTCTAGAAGACAGATGTTTCCGGATTTGAT-ACTTCTCTGAATTTGACT  1049
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCTAGAAGACAGATGTTTCCGGATTTGATAACTTCTCTGAATTTGACT  1050

seq1  CATCCTGTACATTCATGAATCAGAGCAGACTGCCCCATCTCTTTCTCTTA  1099
       ||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TATCCTGTACATTCATGAATCAGAGCAGACTG-CCCATCTCTTTCTC-TA  1098

seq1  CGTTTCAACACACTGTCACTCTGTAGTTCTTAATAGCTTG-AGTGCTTGG  1148
      ||||||| ||||||||||||||||| ||| ||  |||||| ||||| | |
seq2  CGTTTCACCACACTGTCACTCTGTAATTC-TATAAGCTTGAAGTGCCT-G  1146

seq1  GCTATAAGTGAACTTCCTGTGGGTCGGGTCAGCA  1182
      ||| |||||| |||| ||||||||||||||||||
seq2  GCT-TAAGTG-ACTT-CTGTGGGTCGGGTCAGCA  1177

seq1: chr1_58391870_58392997
seq2: B6Ng01-088D04.g_70_1191 (reverse)

seq1  TCAGTGG-CTATAGCTTGCCATG-CAGACCTGAGGACTGAGATAGTATCC  48
      ||||||| ||  ||||| ||||| |||| ||||||||||||||||   ||
seq2  TCAGTGGTCTTAAGCTTACCATGCCAGAACTGAGGACTGAGATAGATCCC  50

seq1  CCAGGACCTACGTAAAGACTAAGAGACTGAGGCTGCTCCCTGCAGCAACC  98
      |||| ||||||||||||| ||||||||||| |||||| ||||||||||||
seq2  CCAGAACCTACGTAAAGATTAAGAGACTGAAGCTGCT-CCTGCAGCAACC  99

seq1  CCAGTACCCGGGAGGAGGAGACAGGGGGTCCCTGAGGCCACTTGTCTAGA  148
      ||||||||| ||||||| ||||| ||||||||||| | ||| ||||||||
seq2  CCAGTACCC-GGAGGAGAAGACA-GGGGTCCCTGAAG-CAC-TGTCTAGA  145

seq1  AAGACTAGCCAAAATGGTAAGGTCTGGGTCTGTCAGGAAACTCTGCCTCA  198
      |||||||||||||   ||||||||||||||||||| ||||||||||||||
seq2  AAGACTAGCCAAA--TGTAAGGTCTGGGTCTGTCA-GAAACTCTGCCTCA  192

seq1  GTAAATAAATTAAAGTACAATCAAGAAAG-CCTTCTGACATTATCCTTTG  247
      ||||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  GTAAATAAATTAAAGTAAAATCAAGAAAGACCTTCTGACA-TATCCTTTG  241

seq1  GCACCACACACATGTGCACTCACACATATGTAGACACACACGGGGAAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACACACATGTGCACTCACACATATGTAGACACACACGGGGAAGGC  291

seq1  GGGAAGGCACTATTAAAAGGAATAAGGATTTATATTTTTAGAGATTCCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCACTATTAAAAGGAATAAGGATTTATATTTTTAGAGATTCCTC  341

seq1  AAAGGAGAGGGGGAAGAAAAAGAAAGATGATGTCCAAACATCATGGCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGGGGGAAGAAAAAGAAAGATGATGTCCAAACATCATGGCTAT  391

seq1  GAGAACAGCACTTTGTTGTAGAAATATTTAGAAACAACTTGACCATTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCACTTTGTTGTAGAAATATTTAGAAACAACTTGACCATTTTG  441

seq1  CATTGCAAAATAATCTCTAACAGAAGTCCACTAACTGGTGAATTTAAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAAATAATCTCTAACAGAAGTCCACTAACTGGTGAATTTAAATT  491

seq1  ATTCAAGTCACTCCATTTTCTTTCAACTGCAGTAGAAACACTGTTTAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCACTCCATTTTCTTTCAACTGCAGTAGAAACACTGTTTAAAT  541

seq1  ATGTTTGCAGCATCTAGTAGATGATGCTATTTTTTGAATTTGTGACTGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCAGCATCTAGTAGATGATGCTATTTTTTGAATTTGTGACTGCG  591

seq1  TCCTTAGGACATTCTGTCCTGATATAAGTTTACAAAACATGCTTTATTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGGACATTCTGTCCTGATATAAGTTTACAAAACATGCTTTATTAG  641

seq1  GCATTCCTTGAGCATACACAGCTGATTTCCTACCTGGTTTTACCACTGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTTGAGCATACACAGCTGATTTCCTACCTGGTTTTACCACTGCC  691

seq1  TTAGATTGCTGCACCATCCATTACCTATGCCGCTATTTACAAAGCACCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGCTGCACCATCCATTACCTATGCCGCTATTTACAAAGCACCTT  741

seq1  GGCCACCCAGTGAGGCAAGTCCAGCTCATGAATTCTCCACCCTCTGTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCAGTGAGGCAAGTCCAGCTCATGAATTCTCCACCCTCTGTTCC  791

seq1  CGCCCAAGACTTTCCTGTCACAGGGATAACATGATTCATCTCCATGCACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAAGACTTTCCTGTCACAGGGATAACATGATTCATCTCCATGCACT  841

seq1  CTGGAATCCCAGAGACTTTCCAATGTGGAGAAAACCACAAACTAAATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCCAGAGACTTTCCAATGTGGAGAAAACCACAAACTAAATTAG  891

seq1  AAAGAAAGCCAGGACAGAATGGCGGAGAATCTTACAAGAGTCAGGAGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCCAGGACAGAATGGCGGAGAATCTTACAAGAGTCAGGAGAAT  941

seq1  GAGAGAGGCGATTTACATTCTGGGAGTGGAGCACAAACTTGAGGATTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGCGATTTACATTCTGGGAGTGGAGCACAAACTTGAGGATTCCA  991

seq1  TGCTGGGTGTGGAGCCAGAATTGCCTGCTAAAAAGAAAGGACTCAGAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTGTGGAGCCAGAATTGCCTGCTAAAAAGAAAGGACTCAGAGCT  1041

seq1  GGGCAGTGGAGGCACACGCTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGAGGCACACGCTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT  1091

seq1  TCGAGGCCAGACTGTTCTACAGAGTGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGACTGTTCTACAGAGTGAATTC  1122