BAC Information

Click to search

BAC

Clone NameB6Ng01-089M18
Chromosome1 (Build37)
Map Location 151,436,952 - 151,582,396
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M18.bB6Ng01-089M18.g
ACCDH902282DH902283
length1,0921,020
definitionDH902282|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M18, 5' end.DH902283|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,436,952 - 151,437,709)(151,581,395 - 151,582,396)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttctcagcatctaacaagatgatcatgtggtttttgtcttt
gagtttatgtactgaattacgttgatggatttccggatattgaaccatcc
ctgcatccctgggatgaaacctacttggtcaggatggatgattgttttga
tgtgttcttggattcgattagcgagaactttattgaggatttttgcatcg
atattcataagggaaattggtctgaagttctctttgctgggtctttttgt
ggtttaggtatcagagtaattgtggcttcatagaatgagttgagtagagt
accttctgtttctattttgtggaatagtttgtgaagaactgggattagat
cttctttgaaggtctgatagaactctgcactaaacccgtctggtcctggg
ctttttttggctgggagactattaatgactgcttctatttctttagggga
aataggactgtttagatcattaacctgatcttgatttaactttggtacct
ggtatctgtctagaaacttgcctatttcatgcaggttctccagttttgtt
gagtatagccttttgtagaaggatctgatggtgttttagatttcttcagg
gtttgttgttatgtctcccttttcatttctgattttgttaattagaatgc
tttccctgtgccctctagtgagtctggctaagggtttatctatcttgttg
attttctcaaagaatcagctcctcgtttgggttgattctttgaatagttc
ttcttgtttccacttggttgatttcgcccctgagtttgattcagaatttt
tttaatttacataaaatagatagttatcagcacatcagcacaacacttgg
aaatctccaggagattaaaaaaaggaaaaaacacacaaagaaacaacccg
gaccaaaataaaccccatggaaacaaaaacaaacatgaatattttcttcc
acttgtaccgaatgtactttccagaaggtggtccttccagcttggtgctc
aggaacaccaggaggaaatgtttttcttgtggcaactaaggt
gaattctcttggttcccctttggctagcagcttaaatagatgtaacccaa
actcacagtgaaaacttcacttggtgacaagatatggacatttggagcac
tgtctcccccattatttggcaattttatttagattgccttaatatataca
tatattttaggaagcttctactgtgttacattttcatactgcccctcaaa
tttctcttagttttaattttctctccacacattctttcctgctaccccat
ctcctgtttgcatccccatgtgatccttccatgttagaccaacacattca
tccatccattcataaatatctaatttatttctctttctatatgagagcta
tctatttcctctagtctcttactctactacataccctctgtagttctatg
ggttatagtttagttatcattgacttaaaagctaatatccacacataagt
gaacattatcttgagcacacctgatcttgtctgatctcagaagctaagta
aggttgggtttggttagtaattggatgggagacattttaactttttaaga
ataataaaaagtactatttattcaggcttgtgatagatccaagcattaac
caactaaaaggtttttttaaagtgttgggatgacaattgtaatataaaat
gtgtatgtaaaaccctaattggtgtgttttccatatttaattcttttaat
ctttaagaatgccctgcagtatctatactgttactatcctgatatcacag
aggaagtaaaagagagaacagatgtgggttgtctgtgatgacacaaccta
taaggagtagagacaggacaacacctcttcttgctttgctgtgaaacagc
tcctcagcaggagcatcatagcctgaaagccctggcttcttgtactttcg
cgcacattctcagatcaatgccaattctcttggccatcagaagactctga
tttattaaattcctgaagctttttatgagatagacatccatatattcagg
taataaaatattctgggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_151436952_151437709
seq2: B6Ng01-089M18.b_391_1139

seq1  GTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGG  50

seq1  ATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGG  100

seq1  TCCTGGGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTT  150

seq1  TAGGGGAAATAGGACTGTTTAGATCATTAACCTGATCTTGATTTAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAATAGGACTGTTTAGATCATTAACCTGATCTTGATTTAACTTT  200

seq1  GGTACCTGGTATCTGTCTAGAAACTTGCCTATTTCATGCAGGTTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGGTATCTGTCTAGAAACTTGCCTATTTCATGCAGGTTCTCCAG  250

seq1  TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTAGATTT  300

seq1  CTTCAGGGTTTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGTTTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATT  350

seq1  AGAATGCTTTCCCTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTTCCCTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCTAT  400

seq1  CTTGTTGATTTTCTCAAAGAATCAGCTCCTCGTTT-GGTTGATTCTTTGA  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTGTTGATTTTCTCAAAGAATCAGCTCCTCGTTTGGGTTGATTCTTTGA  450

seq1  ATAGTTCTTCTTGTTTCCACTTGGTTGATTTCGCCCCTGAGTTTGATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTCTTGTTTCCACTTGGTTGATTTCGCCCCTGAGTTTGATTCA  500

seq1  GAATTTTTTTAATTTACATAAAATAGATAGTTATCAGCACATCAGCACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTAATTTACATAAAATAGATAGTTATCAGCACATCAGCACAA  550

seq1  CACTTGGAAATCTCCAGGAGATTAAAAAAAAGAAAAAACAACAACAAAGA  599
      |||||||||||||||||||||||||||||| |||||||||   |||||||
seq2  CACTTGGAAATCTCCAGGAGATTAAAAAAAGGAAAAAACA--CACAAAGA  598

seq1  AACAAACACAGACAAAAATAAAACCCCATGGAAAACAAAAAACAAAACAA  649
      ||| ||| | ||| ||||| ||||||||||||||   |||||||||   |
seq2  AAC-AACCCGGACCAAAAT-AAACCCCATGGAAA--CAAAAACAAA--CA  642

seq1  TGAATATTTTCTTCCACTTGTACAGAATGTACTTTCCAAGATGTGGT-CT  698
      ||||||||||||||||||||||| ||||||||||||||  | ||||| ||
seq2  TGAATATTTTCTTCCACTTGTACCGAATGTACTTTCCAGAAGGTGGTCCT  692

seq1  TTCAGCTTGGTGCTCAGTGAAACACCATGTAGGATATGTTTTTCTTGT-G  747
      | ||||||||||||||  | ||||||| | |||| ||||||||||||| |
seq2  TCCAGCTTGGTGCTCA--GGAACACCA-GGAGGAAATGTTTTTCTTGTGG  739

seq1  CAACTTAAGGT  758
      |||| ||||||
seq2  CAAC-TAAGGT  749

seq1: chr1_151581395_151582396
seq2: B6Ng01-089M18.g_101_1086 (reverse)

seq1  ATTCCCATGAATTATTTTATTAACCTGAATAATAATGGATGTCTATCTCA  50
      ||||||| ||| ||||||||| |||||||||   ||||||||||||||||
seq2  ATTCCCA-GAA-TATTTTATT-ACCTGAATA--TATGGATGTCTATCTCA  45

seq1  TAAAATGCTTCCATGGAATTTTAAATAAATCAGAGTTCTCTTGATGGCCA  100
      ||||| |||||   |||||||  |||||||||||| |||  |||||||||
seq2  TAAAAAGCTTC--AGGAATTT--AATAAATCAGAG-TCTTCTGATGGCCA  90

seq1  AGAGGGAATTGGCACTGATCTGAGATTGTGCGCGAAAAGTAACAAGAAGC  150
      |||  ||||||||| |||||||||| |||||||| ||||| |||||||||
seq2  AGA--GAATTGGCATTGATCTGAGAATGTGCGCG-AAAGT-ACAAGAAGC  136

seq1  CAGGGCTTGTCAGGCTATGGATGCCTCCTGCTGAGGAGCTGTTTCACAGC  200
      |||||||| ||||||||| |||| ||||||||||||||||||||||||||
seq2  CAGGGCTT-TCAGGCTAT-GATG-CTCCTGCTGAGGAGCTGTTTCACAGC  183

seq1  AAAGCAAGAAGGAGGTGTTGTCCTGTCTCTACTCCTTATAGGTTGTGTCA  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAA-GAGGTGTTGTCCTGTCTCTACTCCTTATAGGTTGTGTCA  232

seq1  TCACAGACAACCCACCTTCTGTTCTCTCTTTTACTTCCTCTGTGATATCA  300
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  TCACAGACAACCCA-CATCTGTTCTCTCTTTTACTTCCTCTGTGATATCA  281

seq1  GGATAGTAACAGTATAGATACTGCAGGGCATTCTTAAAGATT-AAAGAAT  349
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGATAGTAACAGTATAGATACTGCAGGGCATTCTTAAAGATTAAAAGAAT  331

seq1  TAAATATGGAAAACACACCAATTAGGGTTTTACATACACACTTGATATTA  399
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  TAAATATGGAAAACACACCAATTAGGGTTTTACATACACATTTTATATTA  381

seq1  CAATTGTCATGCACAAC-CTATCATAAAA--GTAACCTTAGTTAATGCTT  446
      |||||||||| | |||| || | | ||||   |    || ||||||||||
seq2  CAATTGTCAT-CCCAACACTTTAAAAAAACCTTTTAGTTGGTTAATGCTT  430

seq1  GGATCTATCACAAGCCTGAATAAATAGTACTTTTTATTATTCTTAAAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTATCACAAGCCTGAATAAATAGTACTTTTTATTATTCTTAAAAAG  480

seq1  TTAAAATGTCTCCCATCCAATTACTAACCAAACCCAACCTTACTTAGCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCTCCCATCCAATTACTAACCAAACCCAACCTTACTTAGCTT  530

seq1  CTGAGATCAGACAAGATCAGGTGTGCTCAAGATAATGTTCACTTATGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCAGACAAGATCAGGTGTGCTCAAGATAATGTTCACTTATGTGT  580

seq1  GGATATTAGCTTTTAAGTCAATGATAACTAAACTATAACCCATAGAACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGCTTTTAAGTCAATGATAACTAAACTATAACCCATAGAACTA  630

seq1  CAGAGGGTATGTAGTAGAGTAAGAGACTAGAGGAAATAGATAGCTCTCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTATGTAGTAGAGTAAGAGACTAGAGGAAATAGATAGCTCTCAT  680

seq1  ATAGAAAGAGAAATAAATTAGATATTTATGAATGGATGGATGAATGTGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGAGAAATAAATTAGATATTTATGAATGGATGGATGAATGTGTT  730

seq1  GGTCTAACATGGAAGGATCACATGGGGATGCAAACAGGAGATGGGGTAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACATGGAAGGATCACATGGGGATGCAAACAGGAGATGGGGTAGC  780

seq1  AGGAAAGAATGTGTGGAGAGAAAATTAAAACTAAGAGAAATTTGAGGGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAATGTGTGGAGAGAAAATTAAAACTAAGAGAAATTTGAGGGGC  830

seq1  AGTATGAAAATGTAACACAGTAGAAGCTTCCTAAAATATATGTATATATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAAATGTAACACAGTAGAAGCTTCCTAAAATATATGTATATATT  880

seq1  AAGGCAATCTAAATAAAATTGCCAAATAATGGGGGAGACAGTGCTCCAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATCTAAATAAAATTGCCAAATAATGGGGGAGACAGTGCTCCAAA  930

seq1  TGTCCATATCTTGTCACCAAGTGAAGTTTTCACTGTGAGTTTGGGTTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATATCTTGTCACCAAGTGAAGTTTTCACTGTGAGTTTGGGTTACA  980

seq1  TCTATT  1002
      ||||||
seq2  TCTATT  986