BAC Information

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BAC

Clone NameB6Ng01-090D14
Chromosome1 (Build37)
Map Location 11,056,126 - 11,240,062
singlet/doubletdoublet
Overlap genenone
Upstream geneCspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D14.bB6Ng01-090D14.g
ACCDH902584DH902585
length1,2081,134
definitionDH902584|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D14, 5' end.DH902585|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,238,845 - 11,240,062)(11,056,126 - 11,057,281)
sequence
gaattcactatttcattcttaaattttattttagttgatgacaatgattt
tattggcaattacttaataactacagaatttggtagcattcaaggacact
gaaacatttcttcccaccttatggctgcatacagcataaaaggtgcttat
agctctctggcaatgttgctcatggcagatttgggtaaccagctttcctg
tctttgggttaaatttaagacaaggagagcaggggctggacatccttcca
aatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaaa
aggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaa
ggtccttcctggcctattctgcagagctcttgtatggaggttaactcttc
ctaagtgggctgtgaggtcagttagcccagaaccaagcccctcagaatta
cttggcactcatactttttcctctgattaaattgctctgtaggaaaccca
tcaaacttatcttcagaccaaaatctctaggattggctactctgcatgct
aggcaggttctgaagactgctcacacttcttctcagcccataaatcatca
ctatctccaacagagaaaggaaaaaaaattgtagacattaagagcctgcc
ccaagtgatgtggctattcaggggttctaggcgggggactgggctctgat
tgtagtggactccagtggagaaatgcagtcagcgagcagatctgtgccat
cacaggcttcttgcttataaaacagcagtttcatgtttactctgcactct
tctcactgggtcctaactaccatttaaccaataaatcagacttccagttt
gtttttttaaggtagctcataagaaatacagtgaatgtcatatttactga
aaacaatcttccataagacaagtaagattttgcttatctcttccccactg
aattttgaggatgtatatacttaagttttaaatgatgttacttatatggt
tgactattttgtctgccatatgtctgtgtacacatgcacccagtatccac
ttgggcagaagatggtgtcagcttcctctgggacttgagttatgagttgt
tgtaagataccaggtagttgatggggaattggaactttgttcctctgcag
agaaaccaatctcttaactgcctaactctctgtcctcaattggtcaaatc
tgtctgtg
gaattcagcatgaggagtaaagtctgacaccagaagtttggggtctttta
aggccattgaaatcttgccctcaaagccagaaaaggggagggagtctctc
atcatcttgtttcactcaaagaataaacagccttttctttttcctgacaa
gctagttcttcgcatcctctgtagctttgaattctaatgaatattcagcc
tgtttcataatgaatggatttttatgtttccctcaaacatagaacatttt
ttcttttgaggcagaaacttctcactcttataatggcgctaggagccctt
tattgctcagaatgttcccctgttaattggctggtagcaaacctggaggt
gaacagaccctggttcttgtgactgattttcctcctgggtggcgtctcag
aagtttgtttgtggtgctgtggaaagaatgagggaaaggagctgagttgt
ttgcaacatggaccttgttatcagttttgtgtatttgtgcagggtagctg
gaattatgtaatcaatttgcaaaagaagacgcctcctgcctagtaaaaat
tgtttttaagaactaaagggcatccatactagaagaacaaatattttaaa
aggtcatggttgattccattccattgatgcttattttctgaatgcttccc
tgaatcaaatggctgcccaatgacttgtctaaacaagtggatgagagtat
tatatcccaaaagaagctttgagtatgttttccatgtcatcatttatctt
gtagtttctttatctatataggatgaacaggctctttttgtaatctgtat
ttcataaagataattctgtcaaggaaaacgttcctcaggtctgagtggat
tacactatgcatttcttggttatggctgggagctgtgatgttcatatcca
cttcttcagccagttcccttcacagagattagatccccctgccagctgga
gaaattgtcatcccagcaaacatggtcatggaaactttgttcccgacagc
atttcttagtacgcatatgatctatcacccgtaaatgtcgcctcagattt
ctgactttactctggttgtgctcaattcatcctgaagcagtgattgaaac
attgtctgctgcaatgaatgtacttactattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11238845_11240062
seq2: B6Ng01-090D14.b_47_1254 (reverse)

seq1  CACAGACATAAAATATGACAAATTGAGGGACAAGAGAGTTTAGCAGTTAA  50
      |||||||   | || |||| |||||| |||| ||||||||  ||||||||
seq2  CACAGAC---AGATTTGACCAATTGA-GGAC-AGAGAGTTAGGCAGTTAA  45

seq1  GAGAACTGGTTTCTCCTGCAGAGGACCTAGGTT-CAATT-CCCATCACCT  98
      ||| | |||||||| |||||||||| | | ||| ||||| ||||||| ||
seq2  GAG-ATTGGTTTCT-CTGCAGAGGAACAAAGTTCCAATTCCCCATCAACT  93

seq1  ACCTGGTATCTTACAACCAACTCATAACTCAAGTCCCAGAGG-AGCTGAC  147
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ACCTGGTATCTTACAA-CAACTCATAACTCAAGTCCCAGAGGAAGCTGAC  142

seq1  ACCATCTTCCTGCCCCAGTGGATACTGTGTGCATGTGGTACACAGACATA  197
      |||||||| |||||| ||||||||||| |||||||| |||||||||||||
seq2  ACCATCTT-CTGCCCAAGTGGATACTGGGTGCATGT-GTACACAGACATA  190

seq1  TTGGCAGACAAAATAGTCAACCATATAAGTAACATTCATTTAAAACTTAA  247
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TGGCAGACAAAATAGTCAACCATATAAGTAACA-TCATTTAAAACTTAA  238

seq1  GTATATACATCCTCAAAATTCAGTGGGGAAGAGATAAGCAAAATCCTTAC  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATATACATCCTCAAAATTCAGTGGGGAAGAGATAAGCAAAAT-CTTAC  287

seq1  TTGTCTTATGGAAGATTGTTTTCAGTAAATATGACATTCACTGTATTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATGGAAGATTGTTTTCAGTAAATATGACATTCACTGTATTTCT  337

seq1  TATGAGCTACCTTAAAAAAACAAACTGGAAGTCTGATTTATTGGTTAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCTACCTTAAAAAAACAAACTGGAAGTCTGATTTATTGGTTAAAT  387

seq1  GGTAGTTAGGACCCAGTGAGAAGAGTGCAGAGTAAACATGAAACTGCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTAGGACCCAGTGAGAAGAGTGCAGAGTAAACATGAAACTGCTGT  437

seq1  TTTATAAGCAAGAAGCCTGTGATGGCACAGATCTGCTCGCTGACTGCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCAAGAAGCCTGTGATGGCACAGATCTGCTCGCTGACTGCATT  487

seq1  TCTCCACTGGAGTCCACTACAATCAGAGCCCAGTCCCCCGCCTAGAACCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGGAGTCCACTACAATCAGAGCCCAGTCCCCCGCCTAGAACCC  537

seq1  CTGAATAGCCACATCACTTGGGGCAGGCTCTTAATGTCTACAATTTTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGCCACATCACTTGGGGCAGGCTCTTAATGTCTACAATTTTTTT  587

seq1  TCCTTTCTCTGTTGGAGATAGTGATGATTTATGGGCTGAGAAGAAGTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTGTTGGAGATAGTGATGATTTATGGGCTGAGAAGAAGTGTG  637

seq1  AGCAGTCTTCAGAACCTGCCTAGCATGCAGAGTAGCCAATCCTAGAGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTTCAGAACCTGCCTAGCATGCAGAGTAGCCAATCCTAGAGATT  687

seq1  TTGGTCTGAAGATAAGTTTGATGGGTTTCCTACAGAGCAATTTAATCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGAAGATAAGTTTGATGGGTTTCCTACAGAGCAATTTAATCAGA  737

seq1  GGAAAAAGTATGAGTGCCAAGTAATTCTGAGGGGCTTGGTTCTGGGCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGTATGAGTGCCAAGTAATTCTGAGGGGCTTGGTTCTGGGCTAA  787

seq1  CTGACCTCACAGCCCACTTAGGAAGAGTTAACCTCCATACAAGAGCTCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCACAGCCCACTTAGGAAGAGTTAACCTCCATACAAGAGCTCTG  837

seq1  CAGAATAGGCCAGGAAGGACCTTGCTTGCCCACAGCCACACTCCTGTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGCCAGGAAGGACCTTGCTTGCCCACAGCCACACTCCTGTGAT  887

seq1  TTAAACATTGACACTGCCCCTTTTGACACCCACAAACTATAAAAGTGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTGACACTGCCCCTTTTGACACCCACAAACTATAAAAGTGTAG  937

seq1  AGGTGATCATGAAAAACTATTTGGAAGGATGTCCAGCCCCTGCTCTCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATCATGAAAAACTATTTGGAAGGATGTCCAGCCCCTGCTCTCCTT  987

seq1  GTCTTAAATTTAACCCAAAGACAGGAAAGCTGGTTACCCAAATCTGCCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAATTTAACCCAAAGACAGGAAAGCTGGTTACCCAAATCTGCCAT  1037

seq1  GAGCAACATTGCCAGAGAGCTATAAGCACCTTTTATGCTGTATGCAGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACATTGCCAGAGAGCTATAAGCACCTTTTATGCTGTATGCAGCCA  1087

seq1  TAAGGTGGGAAGAAATGTTTCAGTGTCCTTGAATGCTACCAAATTCTGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGGAAGAAATGTTTCAGTGTCCTTGAATGCTACCAAATTCTGTA  1137

seq1  GTTATTAAGTAATTGCCAATAAAATCATTGTCATCAACTAAAATAAAATT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAGTAATTGCCAATAAAATCATTGTCATCAACTAAAATAAAATT  1187

seq1  TAAGAATGAAATAGTGAATTC  1218
      |||||||||||||||||||||
seq2  TAAGAATGAAATAGTGAATTC  1208

seq1: chr1_11056126_11057281
seq2: B6Ng01-090D14.g_68_1201

seq1  GAATTCAGCATGAGGAGTAAAGTCTGACACCAGAAGTTTGGGGTCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATGAGGAGTAAAGTCTGACACCAGAAGTTTGGGGTCTTTTA  50

seq1  AGGCCATTGAAATCTTGCCCTCAAAGCCAGAAAAGGGGAGGGAGTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTGAAATCTTGCCCTCAAAGCCAGAAAAGGGGAGGGAGTCTCTC  100

seq1  ATCATCTTGTTTCACTCAAAGAATAAACAGCCTTTTCTTTTTCCTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTGTTTCACTCAAAGAATAAACAGCCTTTTCTTTTTCCTGACAA  150

seq1  GCTAGTTCTTCGCATCCTCTGTAGCTTTGAATTCTAATGAATATTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCTTCGCATCCTCTGTAGCTTTGAATTCTAATGAATATTCAGCC  200

seq1  TGTTTCATAATGAATGGATTTTTATGTTTCCCTCAAACATAGAACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATAATGAATGGATTTTTATGTTTCCCTCAAACATAGAACATTTT  250

seq1  TTCTTTTGAGGCAGAAACTTCTCACTCTTATAATGGCGCTAGGAGCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAGGCAGAAACTTCTCACTCTTATAATGGCGCTAGGAGCCCTT  300

seq1  TATTGCTCAGAATGTTCCCCTGTTAATTGGCTGGTAGCAAACCTGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCAGAATGTTCCCCTGTTAATTGGCTGGTAGCAAACCTGGAGGT  350

seq1  GAACAGACCCTGGTTCTTGTGACTGATTTTCCTCCTGGGTGGCGTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACCCTGGTTCTTGTGACTGATTTTCCTCCTGGGTGGCGTCTCAG  400

seq1  AAGTTTGTTTGTGGTGCTGTGGAAAGAATGAGGGAAAGGAGCTGAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTTTGTGGTGCTGTGGAAAGAATGAGGGAAAGGAGCTGAGTTGT  450

seq1  TTGCAACATGGACCTTGTTATCAGTTTTGTGTATTTGTGCAGGGTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACATGGACCTTGTTATCAGTTTTGTGTATTTGTGCAGGGTAGCTG  500

seq1  GAATTATGTAATCAATTTGCAAAAGAAGACGCCTCCTGCCTAGTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGTAATCAATTTGCAAAAGAAGACGCCTCCTGCCTAGTAAAAAT  550

seq1  TGTTTTTAAGAACTAAAGGGCATCCATACTAGAAGAACAAATATTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGAACTAAAGGGCATCCATACTAGAAGAACAAATATTTTAAA  600

seq1  AGGTCATGGTTGATTCCATTCCATTGATGCTTATTTTCTGAATGCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGGTTGATTCCATTCCATTGATGCTTATTTTCTGAATGCTTCCC  650

seq1  TGAATCAAATGGCTGCCCAATGACTTGTCTAAACAAGTGGATGAGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAATGGCTGCCCAATGACTTGTCTAAACAAGTGGATGAGAGTAT  700

seq1  TATATCCCAAAAGAAGCTTTGAGTATGTTTTCCATGTCATCATTTATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCAAAAGAAGCTTTGAGTATGTTTTCCATGTCATCATTTATCTT  750

seq1  GTAGTTTCTTTATCTATATAGGATGAACAGGCTCTTTTTGTAATCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTTTATCTATATAGGATGAACAGGCTCTTTTTGTAATCTGTAT  800

seq1  TTCATAAAGATAATTCTGTCAAAGGAAAACGTTCCTCAGGTCTGAGTGGA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCATAAAGATAATTCTGTC-AAGGAAAACGTTCCTCAGGTCTGAGTGGA  849

seq1  TTACACTATGCATTTCTTGGTTATGGCTGGAAGCTGTGATGTTCATATCC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTACACTATGCATTTCTTGGTTATGGCTGGGAGCTGTGATGTTCATATCC  899

seq1  ACTTCTTCAAGCCAGTTTCCCTTCACAGAAGAATTAGATCCCCCTGCCAG  950
      |||||||| |||||| |||||||||||||   ||||||||||||||||||
seq2  ACTTCTTC-AGCCAG-TTCCCTTCACAGA--GATTAGATCCCCCTGCCAG  945

seq1  CTGGAGAAATTGTCATCCCAGGCCAAACATGGTCATGGAAACTTTGTTCC  1000
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CTGGAGAAATTGTCATCCCAG--CAAACATGGTCATGGAAACTTTGTTCC  993

seq1  CGACAGCCATTTCCTTAGTACCGCATTATGAATCTATCACCCGTAAATGT  1050
      |||||| ||||| ||||||| |||| |||| |||||||||||||||||||
seq2  CGACAG-CATTT-CTTAGTA-CGCA-TATG-ATCTATCACCCGTAAATGT  1038

seq1  CG-CTCAGATTTCTGAACTTTACTCTTGTTGTGGCTCATATCATCTCTTG  1099
      || |||||||||||| |||||||||| ||||| |||||  |||  || ||
seq2  CGCCTCAGATTTCTG-ACTTTACTCTGGTTGT-GCTCAATTCA--TCCTG  1084

seq1  AGGCAAGTGATTTGATACATGTGCTGCTGGCTATATGAAATAGTACTTAC  1149
      | || ||||| |||| ||||   ||||||     |||||   ||||||||
seq2  AAGC-AGTGA-TTGAAACATTGTCTGCTG---CAATGAA--TGTACTTAC  1127

seq1  TATTCTG  1156
      |||||||
seq2  TATTCTG  1134