BAC Information

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BAC

Clone NameB6Ng01-090P20
Chromosome1 (Build37)
Map Location 100,481,224 - 100,646,117
singlet/doubletdoublet
Overlap geneEG666182
Upstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P20.bB6Ng01-090P20.g
ACCDH903143DH903144
length1,156481
definitionDH903143|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P20, 5' end.DH903144|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,644,961 - 100,646,117)(100,481,224 - 100,481,710)
sequence
gaattcctggaagcacccaggcccgatattctggtacatgtggaggcaaa
caactacaactacaaactttttcagacaaggtagaaattgaggagcacaa
ctgagattgtcttctgacctcaaatttataccatggcacacacctgcatt
cacacacaaaaatatgcacatgcatttacatgatacacaggaaaatatac
taaaaatattgtatgtgaaatttgtcattatatcagtgagaagcaaaaac
atgaataagatttaaatataattcatggggaaacacaatttaattgaccc
aacccacatcttcacattaggaactgagaggcaaaaggctgagtcacatt
gtgccaatcatcctggccatacagagtcagttggaagacttcataataga
aacgacattcagctatttgagtacattcatcaatatgggcccatgtgtta
aatttggcccaacagcgccacctgatgtatctttacaggcaatcaagagg
tctctctagtgatgcctctaagccaagaacattgcattagattctattca
ggcagtcttgccacttggctagaaacagaggattttagtaagaactatgc
ccttggaaggcctcattccatgaaaaatgaatgtatctgggggctaaatc
ctaaagccagatctggcatacagattgtatactttgtctaaagacaagag
aaactatttgaaggataattcagactatcttttgagttaaataaactcaa
caagtttttttttacatgcccatatgttcactatatgtttatctttgtat
gataccttatcttgattattaacttgatgaaatttatagttaaccagaaa
acaaacatccaggcatagaagtttctatactgtgctaccagagatggaaa
atctccctctaactgtgagtggtttcatcccatgatctgaggacccagac
taaataaaaagccagaattcatatggtaaaaacattcacttctctgcttc
acactgtggaaaggaagcaatcagaatatttcactctcctgctgaaatga
tggactaataccctcagacttggggacaaaataaaactgttcttcttaaa
gtttattttgtaaggaatttgtcttggccactagaaaataagatatactt
ggcagt
aaagaaaaatgttgaagctgtgacttgttttttgtttgtttggttggttg
gttggttgttttctatttgtttctttggttggctggttggctggttggtt
ggttggttggttttgtttttattgttgttatcaccaataccagaatgtgg
gagcaaaaggaatccactgagcagaaagaagaaaggttgcaaagatgtga
ccaggtctctgatgcgggaggccactgtctctgcaggctgtggaaacact
tctgttaggagattctgaatgggtggcacaagggggagtcaaagtacatt
caggtgacctctggttaacatatggagagactcacattgaccacatcttt
taatacactggcatagtattcaggcagttatgtaggtaccatggatagag
aacatgttattcaataatgaacgaaaaaaggaaagaaagatagaaggagg
ggcgggagaaggaagttcattaagtggctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100644961_100646117
seq2: B6Ng01-090P20.b_50_1205 (reverse)

seq1  ACTGCAAAGTATATCTTATTTTTCTAGTTGCCAAGACAAAATACCTAACA  50
      ||||| |||||||||||| ||||||||| |||||||| |||| ||| |||
seq2  ACTGCCAAGTATATCTTA-TTTTCTAGTGGCCAAGAC-AAATTCCTTACA  48

seq1  AAATAAACTTAAAGAAGAACAGTTTTATTTTGTCCCCAAGTCTGAGGGTA  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTTTAAGAAGAACAGTTTTATTTTGTCCCCAAGTCTGAGGGTA  98

seq1  -TAGTCCATCATATCAGCAGGAGAGTGAAATA-TCTGATTGCTTCCTATC  148
       ||||||||||| ||||||||||||||||||| |||||||||||||| ||
seq2  TTAGTCCATCATTTCAGCAGGAGAGTGAAATATTCTGATTGCTTCCTTTC  148

seq1  CACAGTGTGGAAGCAGAGAAGTGAATGTTATTTACCATATGAATTCTGGC  198
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CACAGTGT-GAAGCAGAGAAGTGAATGTT-TTTACCATATGAATTCTGGC  196

seq1  TTTTTATTTAGTCTGGGTCCTCAGATCATGGGATGAAACCACTCACAGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTAGTCTGGGTCCTCAGATCATGGGATGAAACCACTCACAGTT  246

seq1  AGAGGGAGATTTTCCATCTCTGGTAGCACAGTATAGAAACTTCTATGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGATTTTCCATCTCTGGTAGCACAGTATAGAAACTTCTATGCCT  296

seq1  GGATGTTTGTTTTCTGGTTAACTATAAATTTCATCAAGTTAATAATCAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTGTTTTCTGGTTAACTATAAATTTCATCAAGTTAATAATCAAG  346

seq1  ATAAGGTATCATACAAAGATAAACATATAGTGAACATATGGGCATGT-AA  397
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAAGGTATCATACAAAGATAAACATATAGTGAACATATGGGCATGTAAA  396

seq1  AAAAAACTTGTTGAGTTTATTTAACTCAAAAGATAGTCTGAATTATCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTGTTGAGTTTATTTAACTCAAAAGATAGTCTGAATTATCCTT  446

seq1  CAAATAGTTTCTCTTGTCTTTAGACAAAGTATACAATCTGTATGCCAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTTTCTCTTGTCTTTAGACAAAGTATACAATCTGTATGCCAGAT  496

seq1  CTGGCTTTAGGATTTAGCCCCCAGATACATTCATTTTTCATGGAATGAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTAGGATTTAGCCCCCAGATACATTCATTTTTCATGGAATGAGG  546

seq1  CCTTCCAAGGGCATAGTTCTTACTAAAATCCTCTGTTTCTAGCCAAGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGGGCATAGTTCTTACTAAAATCCTCTGTTTCTAGCCAAGTGG  596

seq1  CAAGACTGCCTGAATAGAATCTAATGCAATGTTCTTGGCTTAGAGGCATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGCCTGAATAGAATCTAATGCAATGTTCTTGGCTTAGAGGCATC  646

seq1  ACTAGAGAGACCTCTTGATTGCCTGTAAAGATACATCAGGTGGCGCTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGAGACCTCTTGATTGCCTGTAAAGATACATCAGGTGGCGCTGTT  696

seq1  GGGCCAAATTTAACACATGGGCCCATATTGATGAATGTACTCAAATAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAATTTAACACATGGGCCCATATTGATGAATGTACTCAAATAGCT  746

seq1  GAATGTCGTTTCTATTATGAAGTCTTCCAACTGACTCTGTATGGCCAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCGTTTCTATTATGAAGTCTTCCAACTGACTCTGTATGGCCAGGA  796

seq1  TGATTGGCACAATGTGACTCAGCCTTTTGCCTCTCAGTTCCTAATGTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGCACAATGTGACTCAGCCTTTTGCCTCTCAGTTCCTAATGTGAA  846

seq1  GATGTGGGTTGGGTCAATTAAATTGTGTTTCCCCATGAATTATATTTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTTGGGTCAATTAAATTGTGTTTCCCCATGAATTATATTTAAA  896

seq1  TCTTATTCATGTTTTTGCTTCTCACTGATATAATGACAAATTTCACATAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCATGTTTTTGCTTCTCACTGATATAATGACAAATTTCACATAC  946

seq1  AATATTTTTAGTATATTTTCCTGTGTATCATGTAAATGCATGTGCATATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAGTATATTTTCCTGTGTATCATGTAAATGCATGTGCATATT  996

seq1  TTTGTGTGTGAATGCAGGTGTGTGCCATGGTATAAATTTGAGGTCAGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGAATGCAGGTGTGTGCCATGGTATAAATTTGAGGTCAGAAG  1046

seq1  ACAATCTCAGTTGTGCTCCTCAATTTCTACCTTGTCTGAAAAAGTTTGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCAGTTGTGCTCCTCAATTTCTACCTTGTCTGAAAAAGTTTGTA  1096

seq1  GTTGTAGTTGTTTGCCTCCACATGTACCAGAATATCGGGCCTGGGTGCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTTGTTTGCCTCCACATGTACCAGAATATCGGGCCTGGGTGCTT  1146

seq1  CCAGGAATTC  1157
      ||||||||||
seq2  CCAGGAATTC  1156

seq1: chr1_100481224_100481710
seq2: B6Ng01-090P20.g_67_553

seq1  GAATTCAAAGAAAAATGTTGAAGCTGTGACTTGTTTTTTGTTTGTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAAATGTTGAAGCTGTGACTTGTTTTTTGTTTGTTTGGT  50

seq1  TGGTTGGTTGGTTGTTTTCTATTTGTTTCTTTGGTTGGCTGGTTGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGTTGTTTTCTATTTGTTTCTTTGGTTGGCTGGTTGGCTGG  100

seq1  TTGGTTGGTTGGTTGGTTTTGTTTTTATTGTTGTTATCACCAATACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTGGTTGGTTTTGTTTTTATTGTTGTTATCACCAATACCAGA  150

seq1  ATGTGGGAGCAAAAGGAATCCACTGAGCAGAAAGAAGAAAGGTTGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGCAAAAGGAATCCACTGAGCAGAAAGAAGAAAGGTTGCAAAG  200

seq1  ATGTGACCAGGTCTCTGATGCGGGAGGCCACTGTCTCTGCAGGCTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCAGGTCTCTGATGCGGGAGGCCACTGTCTCTGCAGGCTGTGGA  250

seq1  AACACTTCTGTTAGGAGATTCTGAAGGGGTGGCACAAGGGGGAGTCAAAG  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACACTTCTGTTAGGAGATTCTGAATGGGTGGCACAAGGGGGAGTCAAAG  300

seq1  TACAGTCAGGTGACCTCTGGTTAACATATGGAGAGACTCACATAGACCAC  350
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACATTCAGGTGACCTCTGGTTAACATATGGAGAGACTCACATTGACCAC  350

seq1  ATCTTTTAAGACACTGGCATAGTATTCAGGCAGTTATGTAGGTACCATGG  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAATACACTGGCATAGTATTCAGGCAGTTATGTAGGTACCATGG  400

seq1  ATAGAGAACAGGTTATTCAAGAAAGAAGGAAAAAAGGAAAGAAAGAAAGA  450
      |||||||||| ||||||||| || ||| |||||||||||||||||| |||
seq2  ATAGAGAACATGTTATTCAATAATGAACGAAAAAAGGAAAGAAAGATAGA  450

seq1  AGGAGGGGTGGGAGAAGGAAGTTCATGAAGTGGCTCC  487
      |||||||| ||||||||||||||||| ||||||||||
seq2  AGGAGGGGCGGGAGAAGGAAGTTCATTAAGTGGCTCC  487