BAC Information

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BAC

Clone NameB6Ng01-091E07
Chromosome1 (Build37)
Map Location 93,795,695 - 93,968,236
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091E07.bB6Ng01-091E07.g
ACCDH903341DH903342
length1,225975
definitionDH903341|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E07, 5' end.DH903342|Mus musculus domesticus DNA, BAC clone: B6Ng01-091E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,795,695 - 93,796,941)(93,967,576 - 93,968,236)
sequence
gaattctgatctgtgcatattccttagtcttgaccagctctatgctgcca
gacagcagcgatctgctcagctacagcgtttgctcacgctcctggaggta
tctgttggcagtggagtacgctgcaaaggtcagcgactcattggctgcag
aggagccagtgtgcctgtgtgtcagtgtgtgtccagacaggatcatcact
gcctggagctctgaagagccttgctgtccagggagtaatttaaccactga
ggcagataagcagaagaacacatttctccagtgggatctggaaatagctg
gtgatagagccgtccctgagcccatctctgagaccgagagagcaacttct
acattttgccaagagaaggaggcagagacctagactccctggcaaagggt
ggctggctatcaccatctcatctcgtgctgatctacccagtcaatggctg
gcagccagtgagttctgtctctgaaattgccacaccttaggagactcttc
ccttactctgggactgcttgtttcagagcaatgtgggcccctgcacttct
gtggcctctcagggacagctcagctggggctcagcagcactgtgtgttgg
tgagcaggcaggtccctccctcatcctgggccgtcagtcatttcatatac
cttaccacaaaggcgatttctgggaccagagctgtgttcctcagaggatg
aaagggggtccagagtggttgtgatacaaccagatggggtgctgccgtca
gctctggccaaggtcatcgcatctgggaaggctgggcaagagaatcagca
tagaaagttcctaaaatcacagagatcattgagagcacaccgacctgtga
cctaaaatctgtactcagactgcccgaaagctctttagaatgccactttt
ctcctcagtcctggaaacatttgctggcctctctgccaaggatgggtaac
acctaggcatgcagggccagtgttctgggaggggttgctgtgaccagcac
tcagtggtatcttcaagtcagcaacatgccacccttcacgatctcaagaa
catggagagatgccagctgttcctcccaccttgtctcaaaatgctgtcct
tggttccgtggaagcaattaatcaagcctaagaacttagaaacaattgcc
attgcgagctaaagagacttacataaacgcagcattacccgaagctcgag
cgagctttgtgataggccacactcc
gaattcatttgaagccatttttcttttcttgtgatcagtttccttatata
taattgcttgatttgtccacccatgaacccacctattccccaacctgtca
attttgcttttgaaagttactgtcccagcatcatgggtacaaaggtcacc
cctgtcccccaacacacacacacacacacacacacacacacacacacaca
cacacacaatagaagctctgtctccatagacaggtagaaaaaaatgagta
gagtaactttgggttgactagatagctgttccagataatgcctctttgct
agaggtagagaatgcggctcggctgatatcagacagcatggtgctgagct
agtctctggtcacattcagctttcccttttaatttgtgttgttataaatg
gattttcctgcaaatgaatctatgaaaagaaatcttaatttcctcccaaa
ctttttttcattgattttatttttttaacatataagaaataaatgtaata
aaccaaatacatggacaaaaatacaagaatcatatgatcatctcaatgga
agaaaaaaaaagaaaaagtctttgataagattcaacatgcattcttaata
aaagccctagaacaagtaagactgtaggaaacatattccaacataataaa
ggttatgtatgacagactcatgatcaatatcatcctaagtgaataagact
attaataagcctcattaaaatcaggaatgagagaggactgcccactatct
ctactgctcatccataatgtgattgaagcattagctagaacagtaagaca
agagaagggataaaattgagaaaatattaagtcaaattattttcagttga
agattgtactatactatacccaatgttcccaaaatttgactagaaaaatt
gtagaaatatcaataattcagcaaagtgtatgatacataattcacttaca
aaatttaccagtcttatacatatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93795695_93796941
seq2: B6Ng01-091E07.b_48_1272

seq1  GAATTCTGATCTGTGCATATTCCTTAGTCTTGACCAGCTCTATGCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTGTGCATATTCCTTAGTCTTGACCAGCTCTATGCTGCCA  50

seq1  GACAGCAGCGATCTGCTCAGCTACAGCGTTTGCTCACGCTCCTGGAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCGATCTGCTCAGCTACAGCGTTTGCTCACGCTCCTGGAGGTA  100

seq1  TCTGTTGGCAGTGGAGTACGCTGCAAAGGTCAGCGACTCATTGGCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGCAGTGGAGTACGCTGCAAAGGTCAGCGACTCATTGGCTGCAG  150

seq1  AGGAGCCAGTGTGCCTGTGTGTCAGTGTGTGTCCAGACAGGATCATCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGTGTGCCTGTGTGTCAGTGTGTGTCCAGACAGGATCATCACT  200

seq1  GCCTGGAGCTCTGAAGAGCCTTGCTGTCCAGGGAGTAATTTAACCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGCTCTGAAGAGCCTTGCTGTCCAGGGAGTAATTTAACCACTGA  250

seq1  GGCAGATAAGCAGAAGAACACATTTCTCCAGTGGGATCTGGAAATAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAAGCAGAAGAACACATTTCTCCAGTGGGATCTGGAAATAGCTG  300

seq1  GTGATAGAGCCGTCCCTGAGCCCATCTCTGAGACCGAGAGAGCAACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAGCCGTCCCTGAGCCCATCTCTGAGACCGAGAGAGCAACTTCT  350

seq1  ACATTTTGCCAAGAGAAGGAGGCAGAGACCTAGACTCCCTGGCAAAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGCCAAGAGAAGGAGGCAGAGACCTAGACTCCCTGGCAAAGGGT  400

seq1  GGCTGGCTATCACCATCTCATCTCGTGCTGATCTACCCAGTCAATGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTATCACCATCTCATCTCGTGCTGATCTACCCAGTCAATGGCTG  450

seq1  GCAGCCAGTGAGTTCTGTCTCTGAAATTGCCACACCTTAGGAGACTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGTGAGTTCTGTCTCTGAAATTGCCACACCTTAGGAGACTCTTC  500

seq1  CCTTACTCTGGGACTGCTTGTTTCAGAGCAATGTGGGCCCCTGCACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTCTGGGACTGCTTGTTTCAGAGCAATGTGGGCCCCTGCACTTCT  550

seq1  GTGGCCTCTCAGGGACAGCTCAGCTGGGGCTCAGCAGCACTGTGTGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCTCAGGGACAGCTCAGCTGGGGCTCAGCAGCACTGTGTGTTGG  600

seq1  TGAGCAGGCAGGTCCCTCCCTCATCCTGGGCCGTCAGTCATTTCATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGCAGGTCCCTCCCTCATCCTGGGCCGTCAGTCATTTCATATAC  650

seq1  CTTACCACAAAGGCGATTTCTGGGACCAGAGCTGTGTTCCTCAGAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACAAAGGCGATTTCTGGGACCAGAGCTGTGTTCCTCAGAGGATG  700

seq1  AAAGGGGGTCCAGAGTGGTTGTGATACAACCAGATGGGGTGCTGCCGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGTCCAGAGTGGTTGTGATACAACCAGATGGGGTGCTGCCGTCA  750

seq1  GCTCTGGCCAAGGTCATCGCATCTGGGAAGGCTGGGCAAGAGAATCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCCAAGGTCATCGCATCTGGGAAGGCTGGGCAAGAGAATCAGCA  800

seq1  TAGAAAGTTCCTAAAATCACAGAGATCATTGAGAGCCACACCGACCTGTG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGAAAGTTCCTAAAATCACAGAGATCATTGAGAG-CACACCGACCTGTG  849

seq1  ACCTAAAATCTGTACTCAGACTGCCCGAAAGCTCTTTAGAATGCCACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAATCTGTACTCAGACTGCCCGAAAGCTCTTTAGAATGCCACTTT  899

seq1  TCTCCTCAGTCCTGGAAACATTTGCTGGCCTCTCTGCCAAGGATGGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGTCCTGGAAACATTTGCTGGCCTCTCTGCCAAGGATGGGTAA  949

seq1  CACCTAGGCATGCAGGGCCAGTGTTCTGGGAGGGGTTGCTGTAGACCAGC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACCTAGGCATGCAGGGCCAGTGTTCTGGGAGGGGTTGCTGT-GACCAGC  998

seq1  ACTCAGTGGTATCTTCAAGTCAGCAACATGCACACCCTTCACGATCCCAA  1050
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  ACTCAGTGGTATCTTCAAGTCAGCAACATGC-CACCCTTCACGATCTCAA  1047

seq1  GAACAGTGGAGAGATGCCAGCTGTTCATCCCACCCTGGTCCCAAAATGCT  1100
      ||||| |||||||||||||||||||| ||||| ||| ||| |||||||||
seq2  GAACA-TGGAGAGATGCCAGCTGTTCCTCCCA-CCTTGTCTCAAAATGCT  1095

seq1  GCTCTTGGTTCCAGTGAGAGCAATTAATACAAGCCAGAG-ACTTAGGAAA  1149
      |  ||||||||| |||  |||||||||| ||||||  || ||||||  ||
seq2  GTCCTTGGTTCC-GTGGAAGCAATTAAT-CAAGCCTAAGAACTTAG--AA  1141

seq1  ACAGCTGCCAGTTGGCAAGGCTAAGAGGACCCTTAACATGAACTGCAAGC  1199
      |||  |||||  | || | |||||   |||   | |||| ||| || |||
seq2  ACAATTGCCA--TTGCGA-GCTAAAGAGAC---TTACATAAAC-GC-AGC  1183

seq1  ATCCACCCGATGGCTCTAGCACAAAGCTTTGTGGATGGCCACATCTCC  1247
      ||  ||||||  |||| |||    |||||||||   ||||||| ||||
seq2  AT-TACCCGA-AGCTCGAGC---GAGCTTTGTGATAGGCCACA-CTCC  1225

seq1: chr1_93967576_93968236
seq2: B6Ng01-091E07.g_70_730 (reverse)

seq1  CATACATAACCTTTATTATGTTGGAATATGTTTCCTACAGTCTTACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAACCTTTATTATGTTGGAATATGTTTCCTACAGTCTTACTTGT  50

seq1  TCTAGGGCTTTTATTAAGAATGCATGTTGAATCTTATCAAAGACTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCTTTTATTAAGAATGCATGTTGAATCTTATCAAAGACTTTTTC  100

seq1  TTTTTTTTTCTTCCATTGAGATGATCATATGATTCTTGTATTTTTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTCCATTGAGATGATCATATGATTCTTGTATTTTTGTCCA  150

seq1  TGTATTTGGTTTATTACATTTATTTCTTATATGTTAAAAAAATAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGGTTTATTACATTTATTTCTTATATGTTAAAAAAATAAAATCA  200

seq1  ATGAAAAAAAGTTTGGGAGGAAATTAAGATTTCTTTTCATAGATTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAGTTTGGGAGGAAATTAAGATTTCTTTTCATAGATTCATTT  250

seq1  GCAGGAAAATCCATTTATAACAACACAAATTAAAAGGGAAAGCTGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAATCCATTTATAACAACACAAATTAAAAGGGAAAGCTGAATGT  300

seq1  GACCAGAGACTAGCTCAGCACCATGCTGTCTGATATCAGCCGAGCCGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGACTAGCTCAGCACCATGCTGTCTGATATCAGCCGAGCCGCAT  350

seq1  TCTCTACCTCTAGCAAAGAGGCATTATCTGGAACAGCTATCTAGTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCTCTAGCAAAGAGGCATTATCTGGAACAGCTATCTAGTCAACC  400

seq1  CAAAGTTACTCTACTCATTTTTTTCTACCTGTCTATGGAGACAGAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTACTCTACTCATTTTTTTCTACCTGTCTATGGAGACAGAGCTTC  450

seq1  TATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500

seq1  TGGGGGACAGGGGTGACCTTTGTACCCATGATGCTGGGACAGTAACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACAGGGGTGACCTTTGTACCCATGATGCTGGGACAGTAACTTTC  550

seq1  AAAAGCAAAATTGACAGGTTGGGGAATAGGTGGGTTCATGGGTGGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAATTGACAGGTTGGGGAATAGGTGGGTTCATGGGTGGACAAA  600

seq1  TCAAGCAATTATATATAAGGAAACTGATCACAAGAAAAGAAAAATGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAATTATATATAAGGAAACTGATCACAAGAAAAGAAAAATGGCTT  650

seq1  CAAATGAATTC  661
      |||||||||||
seq2  CAAATGAATTC  661