BAC Information

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BAC

Clone NameB6Ng01-092H03
Chromosome1 (Build37)
Map Location 11,469,552 - 11,589,849
singlet/doubletdoublet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092H03.bB6Ng01-092H03.g
ACCDH904206DH904207
length1,0951,208
definitionDH904206|Mus musculus domesticus DNA, BAC clone: B6Ng01-092H03, 5' end.DH904207|Mus musculus domesticus DNA, BAC clone: B6Ng01-092H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,469,552 - 11,470,652)(11,588,629 - 11,589,849)
sequence
gaattcagagaggacagcttactggagttggttttgctctcccacaatat
gtgtcatgggattgaactcaggtcatacagcttggctgtatctgctaagt
catcttgctggccgattacctttatacattttagatcattaatggaccct
gaatttattattgtctttctctttatattagagtttagaaaaatatttta
aaaacccactgctttcatagttccttcagattgctcatcacagtcatgct
atcacatttttatttcataaataccaccttctcttcagtcccaatggatg
atagctttcattcttctgaaacagctccatatcttcttgccttaagtgat
ctcttaatttacccaaatatatgtttttatggtgatttcttgttgactgt
tcatatatatgaatgaaagaaaatgtttctcacaaatagcttgcatatgc
ttctccttaactaaatgtgttcccctagaagacccctgttctgtttgtgt
tgctggagataagagcagtcactatttcttatgctgtccttatctgtctc
cctgtgagacccacagcaaagcattgccttaagctaactttattattttc
tctctattgggcctcactggaggtgagttattggctccccatgtgagtat
gatgaataaaagcttccactattgactctacctattagaagtggggaggg
acactataactcttcaaagaaccagataacctgctcttggcttctatttt
gtgatgaagtaagaatgttctctgctttctcttttcttttcttttctttt
cttttcttttcttttcttttcttttctttcctttcctttcctttcctttc
ctttcctttcctttcctttccttttctttttttctcagtgacttttaatg
gcaagcaacacaaagcataaccaattccaggaagataaacaatgacacaa
tgcttatgtggtgagtttatggtacacgaatctatgtttgactaagggca
tttccttcagctaggccagtctctcagtatatatgcataaatggaggaac
tgggcagatatatgccagttcttaattaaaacaaaagcagatgtt
gaattccaaacacaaaacaaattagtgagtgtggatgactcagaaacttc
cacttcttgatctctggctgtaaacaatgatcagtgagccttctcaggtg
ttgcttatatcctttctatcagtgttcttatgagttcagcaagtccttat
tcaagtccttgaactacagggtgattgtgtctatgcatatttcataaagg
cgatgacaacatggaagccaactgaagttataactcagagcatgggtgct
aacacaagatgggaccttctactgagcttccgttccaggggagatattgt
gagaagtgacagatacctcacacagtgtcaggatgtcttagctctgcggc
tgtattgattgatttggtgcatctccgtaaggtttggttaacttttggta
gtagctgaagaataattaatgggatttgttagaatatcttatattgtgga
aaaaaaatgacttgaattgaggtaactcttttcaatgccttaaaaattaa
tcttctgagtgttttaattactatatgttaaagtaatccccatttggata
ttttatctataatgggcactaatttagattaacttgcttttatactacac
tgaatgaattaatgttttaagcaatcttacacataatattgaaatactca
gtggttgaatgtcttaaagtcctcaaaatttttataaagaatcatttata
atgaagaatcttcagtttattttgctattctgatgttctaaatgatcagt
gctgtaagggaaaaaaaacccatagaggcttatgttggtgtgtttttaaa
tctccacgtacagataattcattatttgctagatgatattatttcataag
tgggaatttataaatagaatttaaaatagtcatagactttaatatgaaat
ggatccttaaatatatttcctcatgcctaggatgtttatgaaataaatcc
acagacatacatttgaataactgtgatatataatccacatgttataacaa
cactgcatttcataaagacagaaggactaggtttttttatatgtactatc
cacactaaaagatttctgcttaagtcaaccattatattgattggcatcat
tttataaaattgaaataaggtcatatattttacggttcaattccacattt
acgatactttccatgcatagcacatttacgcctcatttatatggccaaga
taaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11469552_11470652
seq2: B6Ng01-092H03.b_45_1139

seq1  GAATTCAGAGAGGACAGCTTACTGGAGTTGGTTTTGCTCTCCCACAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGGACAGCTTACTGGAGTTGGTTTTGCTCTCCCACAATAT  50

seq1  GTGTCATGGGATTGAACTCAGGTCATACAGCTTGGCTGTATCTGCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGGGATTGAACTCAGGTCATACAGCTTGGCTGTATCTGCTAAGT  100

seq1  CATCTTGCTGGCCGATTACCTTTATACATTTTAGATCATTAATGGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCTGGCCGATTACCTTTATACATTTTAGATCATTAATGGACCCT  150

seq1  GAATTTATTATTGTCTTTCTCTTTATATTAGAGTTTAGAAAAATATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTATTGTCTTTCTCTTTATATTAGAGTTTAGAAAAATATTTTA  200

seq1  AAAACCCACTGCTTTCATAGTTCCTTCAGATTGCTCATCACAGTCATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCACTGCTTTCATAGTTCCTTCAGATTGCTCATCACAGTCATGCT  250

seq1  ATCACATTTTTATTTCATAAATACCACCTTCTCTTCAGTCCCAATGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTTTTATTTCATAAATACCACCTTCTCTTCAGTCCCAATGGATG  300

seq1  ATAGCTTTCATTCTTCTGAAACAGCTCCATATCTTCTTGCCTTAAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCATTCTTCTGAAACAGCTCCATATCTTCTTGCCTTAAGTGAT  350

seq1  CTCTTAATTTACCCAAATATATGTTTTTATGGTGATTTCTTGTTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATTTACCCAAATATATGTTTTTATGGTGATTTCTTGTTGACTGT  400

seq1  TCATATATATGAATGAAAGAAAATGTTTCTCACAAATAGCTTGCATATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATGAATGAAAGAAAATGTTTCTCACAAATAGCTTGCATATGC  450

seq1  TTCTCCTTAACTAAATGTGTTCCCCTAGAAGACCCCTGTTCTGTTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTAACTAAATGTGTTCCCCTAGAAGACCCCTGTTCTGTTTGTGT  500

seq1  TGCTGGAGATAAGAGCAGTCACTATTTCTTATGCTGTCCTTATCTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGATAAGAGCAGTCACTATTTCTTATGCTGTCCTTATCTGTCTC  550

seq1  CCTGTGAGACCCACAGCAAAGCATTGCCTTAAGCTAACTTTATTATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGACCCACAGCAAAGCATTGCCTTAAGCTAACTTTATTATTTTC  600

seq1  TCTCTATTGGGCCTCACTGGAGGTGAGTTATTGGCTCCCCATGTGAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTGGGCCTCACTGGAGGTGAGTTATTGGCTCCCCATGTGAGTAT  650

seq1  GATGAATAAAAGCTTCCACTATTGACTCTACCTATTAGAAGTGGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAAAAGCTTCCACTATTGACTCTACCTATTAGAAGTGGGGAGGG  700

seq1  ACACTATAACTCTTCAAAGAACCAGATAACCTGCTCTTGGCTTCTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATAACTCTTCAAAGAACCAGATAACCTGCTCTTGGCTTCTATTTT  750

seq1  GTGATGAAGTAAGAATGTTCTCTGCTTTCTCTTTTCTTTTCTTTTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAGTAAGAATGTTCTCTGCTTTCTCTTTTCTTTTCTTTTCTTTT  800

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTC  850

seq1  CTTTCCTTTCCTTTCCTTTCCTTTTCTTTTTTTCTCAGTGACTTTTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCTTTCCTTTCCTTTTCTTTTTTTCTCAGTGACTTTTAATG  900

seq1  GCAAGCAACACAAAGCATAACCAATTCCAGGAAGATAAACAATGACCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  GCAAGCAACACAAAGCATAACCAATTCCAGGAAGATAAACAATGA-CAC-  948

seq1  AATGCTTATGTGGTGAGTTTATGGTACACAGAATCTATGTTTGACTAAGG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGCTTATGTGGTGAGTTTATGGTACAC-GAATCTATGTTTGACTAAGG  997

seq1  GCATTTCCTTCAGGCTAGGCCAGTCTCTCAAGTATATATGCATAAATGGA  1050
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GCATTTCCTTCA-GCTAGGCCAGTCTCTC-AGTATATATGCATAAATGGA  1045

seq1  GGAACTTGGCAGGATATATCGCATGTCTTAATTAAAACAAAGACAGATGT  1100
      |||||| |||| |||||||  ||  ||||||||||||||||  |||||||
seq2  GGAACTGGGCA-GATATATGCCAGTTCTTAATTAAAACAAAAGCAGATGT  1094

seq1  T  1101
      |
seq2  T  1095

seq1: chr1_11588629_11589849
seq2: B6Ng01-092H03.g_68_1275 (reverse)

seq1  TTTTATTATCTATGCCATAATAAAATGAGCTGAAAATGTGTCATGCATGG  50
      |||| ||||||  ||||||   |||||||  | |||||||  ||||||||
seq2  TTTTTTTATCTTGGCCATA--TAAATGAGGCGTAAATGTGCTATGCATGG  48

seq1  AAAAGTAATCTGTAAATGT-GAATTGATACGTAAAATATATGACTTTATT  99
       ||||| ||| |||||||| |||||||  ||||||||||||||| |||||
seq2  -AAAGT-ATC-GTAAATGTGGAATTGAACCGTAAAATATATGACCTTATT  95

seq1  TAATATTTATATAAAAATGAATTGCCCATCAATATAATTGGTTGACTTAA  149
      | |  |||||   |||||||  |||| |||||||||| ||||||||||||
seq2  TCAATTTTAT---AAAATGA--TGCCAATCAATATAA-TGGTTGACTTAA  139

seq1  GCAGAAAATCTTTTAGTGTAGATAGTACATATAAATAAACTTAGTCCTTC  199
      |||| |||||||||||||| ||||||||||||||| |||| |||||||||
seq2  GCAG-AAATCTTTTAGTGTGGATAGTACATATAAAAAAACCTAGTCCTTC  188

seq1  TGTCTTTATTGAAATGCAGTGTTGTTAATACATGTTGATTATATATTCAC  249
      |||||||| ||||||||||||||||||  |||||| ||||||||| ||||
seq2  TGTCTTTA-TGAAATGCAGTGTTGTTATAACATGTGGATTATATA-TCAC  236

seq1  AGTTATTCAAATGTATGTCTGTGGATTTATTTCATAAACATCCTAGGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCAAATGTATGTCTGTGGATTTATTTCATAAACATCCTAGGCAT  286

seq1  GAGGAAATATATTTAAGGATCCATTTCATATTAAAGTCTATGACTATTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATATATTTAAGGATCCATTTCATATTAAAGTCTATGACTATTTT  336

seq1  AAATTCTATTTATAAATTCCCACTTATGAAATAATATCATCTAGCAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATTTATAAATTCCCACTTATGAAATAATATCATCTAGCAAATA  386

seq1  ATGAATTATCTGTACGTGGAGATTTAAAAACACACCAACATAAGCCTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATCTGTACGTGGAGATTTAAAAACACACCAACATAAGCCTCTA  436

seq1  TGGGTTTTTTTTCCCTTACAGCACTGATCATTTAGAACATCAGAATAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTTTTCCCTTACAGCACTGATCATTTAGAACATCAGAATAGCA  486

seq1  AAATAAACTGAAGATTCTTCATTATAAATGATTCTTTATAAAAATTTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTGAAGATTCTTCATTATAAATGATTCTTTATAAAAATTTTGA  536

seq1  GGACTTTAAGACATTCAACCACTGAGTATTTCAATATTATGTGTAAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAAGACATTCAACCACTGAGTATTTCAATATTATGTGTAAGATT  586

seq1  GCTTAAAACATTAATTCATTCAGTGTAGTATAAAAGCAAGTTAATCTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAACATTAATTCATTCAGTGTAGTATAAAAGCAAGTTAATCTAAA  636

seq1  TTAGTGCCCATTATAGATAAAATATCCAAATGGGGATTACTTTAACATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCCATTATAGATAAAATATCCAAATGGGGATTACTTTAACATAT  686

seq1  AGTAATTAAAACACTCAGAAGATTAATTTTTAAGGCATTGAAAAGAGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAAACACTCAGAAGATTAATTTTTAAGGCATTGAAAAGAGTTA  736

seq1  CCTCAATTCAAGTCATTTTTTTTCCACAATATAAGATATTCTAACAAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTCAAGTCATTTTTTTTCCACAATATAAGATATTCTAACAAATC  786

seq1  CCATTAATTATTCTTCAGCTACTACCAAAAGTTAACCAAACCTTACGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATTATTCTTCAGCTACTACCAAAAGTTAACCAAACCTTACGGAG  836

seq1  ATGCACCAAATCAATCAATACAGCCGCAGAGCTAAGACATCCTGACACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCAAATCAATCAATACAGCCGCAGAGCTAAGACATCCTGACACTG  886

seq1  TGTGAGGTATCTGTCACTTCTCACAATATCTCCCCTGGAACGGAAGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTATCTGTCACTTCTCACAATATCTCCCCTGGAACGGAAGCTCA  936

seq1  GTAGAAGGTCCCATCTTGTGTTAGCACCCATGCTCTGAGTTATAACTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTCCCATCTTGTGTTAGCACCCATGCTCTGAGTTATAACTTCA  986

seq1  GTTGGCTTCCATGTTGTCATCGCCTTTATGAAATATGCATAGACACAATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTCCATGTTGTCATCGCCTTTATGAAATATGCATAGACACAATC  1036

seq1  ACCCTGTAGTTCAAGGACTTGAATAAGGACTTGCTGAACTCATAAGAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAGTTCAAGGACTTGAATAAGGACTTGCTGAACTCATAAGAACA  1086

seq1  CTGATAGAAAGGATATAAGCAACACCTGAGAAGGCTCACTGATCATTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAAGGATATAAGCAACACCTGAGAAGGCTCACTGATCATTGTT  1136

seq1  TACAGCCAGAGATCAAGAAGTGGAAGTTTCTGAGTCATCCACACTCACTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGAGATCAAGAAGTGGAAGTTTCTGAGTCATCCACACTCACTA  1186

seq1  ATTTGTTTTGTGTTTGGAATTC  1221
      ||||||||||||||||||||||
seq2  ATTTGTTTTGTGTTTGGAATTC  1208