BAC Information

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BAC

Clone NameB6Ng01-092O22
Chromosome1 (Build37)
Map Location 175,240,844 - 175,422,144
singlet/doubletdoublet
Overlap geneDarc, Cadm3, Aim2, EG240921
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneBC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O22.bB6Ng01-092O22.g
ACCDH904557DH904558
length9431,007
definitionDH904557|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O22, 5' end.DH904558|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,421,202 - 175,422,144)(175,240,844 - 175,241,850)
sequence
gaattctccatgccagaaaagtgcagcaggacaagcattatttcagtcca
taatctcaatcaaagctcgaggtttcccactgactcccaggccccaggtt
tccctgtgcttaccagtgaataatgtagagacactgaggaagcattaact
tcaccattgaaggaggacagcttagttctataatcaagagggaggtggat
aatgccaaatgcctttctagctatttgaggttgcagcttggagttgtgtg
tttgtaacattatgctgtggcaagtctaggtcttgggagctactaatgga
tgcatagatgctacaggaatgacttaaaccaggagttgtttcatctcaga
ttttccttgaaactcattcacatgcagctggcaactgacacagcaaagat
ctcctgacactgagtctgagcagaaaagaaagaagagactgggtgacttg
gctttttttggtctaagttttcaccttcattcaaaggaatgaaggttcct
agggatccttttgcaagcctgtaggacatgaggattataaatctaaatct
tgtacctatgaagatttgcaagaaacatcctgagtgtaactagctctctt
tgacttttttggtaattgtttacaggaaggaaactcttgagtttctgtct
ctgaggaaatcgaaagctatgaaccttgtccactccccacaaagtagcac
aggatgagaaacccagttcccctcagtctgagcagctgagcagtgactct
acccagtgtcagctttccatctctctctgaaaacacttcattgtctcaga
atttcaggagattacaaaatcctctggttctctttctgagagatttactg
tttactcttcatacacacactcacacacagactcacacacacacacacac
acactctctctctctctctctctctctctctctctctctctct
gaattctctcagctacccactgtagttcccccttcacagctctcaaatga
gattattgatctcctccagtgtctgaaaatcattttaataatgagaaatg
ttcagattggcatttcagactttttgtgctaagttttagaactcttctta
gtccccccagcaggaggcatgaacagaagtatggggtgagttacagatgt
gtgcttacatggtgaggatacagggtgcgttacaggattattttgagcca
ttatttatttgttcttttaatcactatgtaaaaatgacttttgtatttgc
cttgagttatttttcttttcttgaggaaacttcctaaattcttttggttc
ttctggccaaatgtgtttcagttggagagtttagcatactgtcaacttta
cccatgtgaaattctgcctccctatgaagattaatgtgatattcatttgc
agaatggggaaagaagtagatagcaagcagaccaatgctgttctgctaga
ggaaaaagatatatttatcaagacccttatcaatgtatggcaattattca
tttgcttatctctcctattagactgtaatcctcacaagacaagatactcg
atttgtcttattcattattttttttgaaagcaagcacaaggcacacaagt
tcacaaactgatattatgtacatagtatttcaggtcagactgcttagcgt
cagattctagattagccacatgcaacttttatgatctttgcatgccacac
aattccatatttcagtctctttcttttaaatacagacaacttttcacttc
tcagtcagatagtcactgtggaagttaaattatacaggctatagagtgta
tttagaatgctggcctgtgcacatgaagtgcacaaaagcagcaattcttg
ctttagacatgagttcctaagtgtactggctagtttgtgtcaacttgaca
cagctggagttaccacagagaaaggagcttcagtttgaggaaatgccttc
atgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175421202_175422144
seq2: B6Ng01-092O22.b_47_989 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTG  50

seq1  TGTGTGTGTGAGTCTGTGTGTGAGTGTGTGTATGAAGAGTAAACAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGAGTCTGTGTGTGAGTGTGTGTATGAAGAGTAAACAGTAAA  100

seq1  TCTCTCAGAAAGAGAACCAGAGGATTTTGTAATCTCCTGAAATTCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGAAAGAGAACCAGAGGATTTTGTAATCTCCTGAAATTCTGAGA  150

seq1  CAATGAAGTGTTTTCAGAGAGAGATGGAAAGCTGACACTGGGTAGAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGTGTTTTCAGAGAGAGATGGAAAGCTGACACTGGGTAGAGTCA  200

seq1  CTGCTCAGCTGCTCAGACTGAGGGGAACTGGGTTTCTCATCCTGTGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCTGCTCAGACTGAGGGGAACTGGGTTTCTCATCCTGTGCTAC  250

seq1  TTTGTGGGGAGTGGACAAGGTTCATAGCTTTCGATTTCCTCAGAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGGAGTGGACAAGGTTCATAGCTTTCGATTTCCTCAGAGACAGA  300

seq1  AACTCAAGAGTTTCCTTCCTGTAAACAATTACCAAAAAAGTCAAAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAGTTTCCTTCCTGTAAACAATTACCAAAAAAGTCAAAGAGAG  350

seq1  CTAGTTACACTCAGGATGTTTCTTGCAAATCTTCATAGGTACAAGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACACTCAGGATGTTTCTTGCAAATCTTCATAGGTACAAGATTTA  400

seq1  GATTTATAATCCTCATGTCCTACAGGCTTGCAAAAGGATCCCTAGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAATCCTCATGTCCTACAGGCTTGCAAAAGGATCCCTAGGAACC  450

seq1  TTCATTCCTTTGAATGAAGGTGAAAACTTAGACCAAAAAAAGCCAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTTTGAATGAAGGTGAAAACTTAGACCAAAAAAAGCCAAGTCA  500

seq1  CCCAGTCTCTTCTTTCTTTTCTGCTCAGACTCAGTGTCAGGAGATCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTCTTCTTTCTTTTCTGCTCAGACTCAGTGTCAGGAGATCTTTG  550

seq1  CTGTGTCAGTTGCCAGCTGCATGTGAATGAGTTTCAAGGAAAATCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAGTTGCCAGCTGCATGTGAATGAGTTTCAAGGAAAATCTGAGA  600

seq1  TGAAACAACTCCTGGTTTAAGTCATTCCTGTAGCATCTATGCATCCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAACTCCTGGTTTAAGTCATTCCTGTAGCATCTATGCATCCATTA  650

seq1  GTAGCTCCCAAGACCTAGACTTGCCACAGCATAATGTTACAAACACACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCCCAAGACCTAGACTTGCCACAGCATAATGTTACAAACACACAA  700

seq1  CTCCAAGCTGCAACCTCAAATAGCTAGAAAGGCATTTGGCATTATCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTGCAACCTCAAATAGCTAGAAAGGCATTTGGCATTATCCACC  750

seq1  TCCCTCTTGATTATAGAACTAAGCTGTCCTCCTTCAATGGTGAAGTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTGATTATAGAACTAAGCTGTCCTCCTTCAATGGTGAAGTTAAT  800

seq1  GCTTCCTCAGTGTCTCTACATTATTCACTGGTAAGCACAGGGAAACCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCAGTGTCTCTACATTATTCACTGGTAAGCACAGGGAAACCTGG  850

seq1  GGCCTGGGAGTCAGTGGGAAACCTCGAGCTTTGATTGAGATTATGGACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGAGTCAGTGGGAAACCTCGAGCTTTGATTGAGATTATGGACTG  900

seq1  AAATAATGCTTGTCCTGCTGCACTTTTCTGGCATGGAGAATTC  943
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCTTGTCCTGCTGCACTTTTCTGGCATGGAGAATTC  943

seq1: chr1_175240844_175241850
seq2: B6Ng01-092O22.g_70_1076

seq1  GAATTCTCTCAGCTACCCACTGTAGTTCCCCCTTCACAGCTCTCAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGCTACCCACTGTAGTTCCCCCTTCACAGCTCTCAAATGA  50

seq1  GATTATTGATCTCCTCCAGTGTCTGAAAATCATTTTAATAATGAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGATCTCCTCCAGTGTCTGAAAATCATTTTAATAATGAGAAATG  100

seq1  TTCAGATTGGCATTTCAGACTTTTTGTGCTAAGTTTTAGAACTCTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTGGCATTTCAGACTTTTTGTGCTAAGTTTTAGAACTCTTCTTA  150

seq1  GTCCCCCCAGCAGGAGGCATGAACAGAAGTATGGGGTGAGTTACAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCAGCAGGAGGCATGAACAGAAGTATGGGGTGAGTTACAGATGT  200

seq1  GTGCTTACATGGTGAGGATACAGGGTGCGTTACAGGATTATTTTGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACATGGTGAGGATACAGGGTGCGTTACAGGATTATTTTGAGCCA  250

seq1  TTATTTATTTGTTCTTTTAATCACTATGTAAAAATGACTTTTGTATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTGTTCTTTTAATCACTATGTAAAAATGACTTTTGTATTTGC  300

seq1  CTTGAGTTATTTTTCTTTTCTTGAGGAAACTTCCTAAATTCTTTTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTATTTTTCTTTTCTTGAGGAAACTTCCTAAATTCTTTTGGTTC  350

seq1  TTCTGGCCAAATGTGTTTCAGTTGGAGAGTTTAGCATACTGTCAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCAAATGTGTTTCAGTTGGAGAGTTTAGCATACTGTCAACTTTA  400

seq1  CCCATGTGAAATTCTGCCTCCCTATGAAGATTAATGTGATATTCATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGAAATTCTGCCTCCCTATGAAGATTAATGTGATATTCATTTGC  450

seq1  AGAATGGGGAAAGAAGTAGATAGCAAGCAGACCAATGCTGTTCTGCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGGAAAGAAGTAGATAGCAAGCAGACCAATGCTGTTCTGCTAGA  500

seq1  GGAAAAAGATATATTTATCAAGACCCTTATCAATGTATGGCAATTATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGATATATTTATCAAGACCCTTATCAATGTATGGCAATTATTCA  550

seq1  TTTGCTTATCTCTCCTATTAGACTGTAATCCTCACAAGACAAGATACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATCTCTCCTATTAGACTGTAATCCTCACAAGACAAGATACTCG  600

seq1  ATTTGTCTTATTCATTATTTTTTTTGAAAGCAAGCACAAGGCACACAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTATTCATTATTTTTTTTGAAAGCAAGCACAAGGCACACAAGT  650

seq1  TCACAAACTGATATTATGTACATAGTATTTCAGGTCAGACTGCTTAGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTGATATTATGTACATAGTATTTCAGGTCAGACTGCTTAGCGT  700

seq1  CAGATTCTAGATTAGCCACATGCAACTTTTATGATCTTTGCATGCCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTAGATTAGCCACATGCAACTTTTATGATCTTTGCATGCCACAC  750

seq1  AATTCCATATTTCAGTCTCTTTCTTTTAAATACAGACAACTTTTCACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATATTTCAGTCTCTTTCTTTTAAATACAGACAACTTTTCACTTC  800

seq1  TCAGTCAGATAGTCACTGTGGAAGTTAAATTATACAGGCTATAGAGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGATAGTCACTGTGGAAGTTAAATTATACAGGCTATAGAGTGTA  850

seq1  TTTAGAATGCTGGCCTGTGCACATGAAGTGCACAAAAGCAGCAATTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGCTGGCCTGTGCACATGAAGTGCACAAAAGCAGCAATTCTTG  900

seq1  CTATAGACATGAGTTCCTAAGTGTACTGGCTAGTTTTGTGTCAACTTGAC  950
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTAGACATGAGTTCCTAAGTGTACTGGCTAG-TTTGTGTCAACTTGAC  949

seq1  ACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAG-TTGAGGAAATGCCTC  999
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTTGAGGAAATGCCTT  999

seq1  CATGAGAT  1007
      ||||||||
seq2  CATGAGAT  1007