BAC Information

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BAC

Clone NameB6Ng01-093A18
Chromosome1 (Build37)X (Build37)
Map Location 61,756,864 - 61,757,77999,938,963 - 99,939,105
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A18.bB6Ng01-093A18.g
ACCDH904640DH904641
length916234
definitionDH904640|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A18, 5' end.DH904641|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,756,864 - 61,757,779)(99,938,963 - 99,939,105)
sequence
gaattcattttttttctccttctactccacatcagctccgttttctctca
gaactcctataggcttgaccactgcctgtgcctcactttactttgcaata
agcctttgcctctctctttgtctccctgttgggatgtggctcttcatcag
agctacaaagctgagagtgaaggtcagcgtctgagcatccctttgcattc
catgtgagtgctgtccgatggcctcactgcatgaccagggctgagctcat
gtcttcgggtgcttaatgtacgctgagggatgctccacagagatttaatt
gtcatcagctcctgtggaagatacagacctgtcctcttcttttgaaaaag
tacaaaaatgcctgagactatctcaaatatgtcactattatcaacagttg
tatttatagtatccttcacagagtgagtggtatgacaagacacaagcaag
gagcactttatgtcatgactcatcgctagagaggaatataccaaaattct
caaatgtgattgcattggtttattttcacgtgaaatacaaactaccaagt
gtaacttctggccattcattgttaaggttgtttgaacaaaacttattgcc
acatcagtcatgtcctacaaaagcaatatgcctttcccttaaaatttatc
tacctttaaagtccttaagttgatgataaaagaaataaaactcaatcaca
cttgatatacttactacctgatttttcttagtatcggaaactactgttgg
aatatgaactaaccagtacccccagagctcgtgtctctagctgcatatgt
agcagaagatggccttgtcggccatcactgggaagagaggccccttgcaa
actttatatgccccagtacaggggaacgccagggccaagaagtgggagtg
ggtgggtaggggagca
tttcttttcttcctcaccaatacacacacatatacatgtgtgtgtgtgtg
tgtatatatatatatatatatatgtacaaatatttatacacacaaatata
tatatacatatatatacaaatatatatatacacacaaatatatatatata
tgtgtgtatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61756864_61757779
seq2: B6Ng01-093A18.b_35_950

seq1  GAATTCATTTTTTTTCTCCTTCTACTCCACATCAGCTCCGTTTTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTTCTCCTTCTACTCCACATCAGCTCCGTTTTCTCTCA  50

seq1  GAACTCCTATAGGCTTGACCACTGCCTGTGCCTCACTTTACTTTGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTATAGGCTTGACCACTGCCTGTGCCTCACTTTACTTTGCAATA  100

seq1  AGCCTTTGCCTCTCTCTTTGTCTCCCTGTTGGGATGTGGCTCTTCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGCCTCTCTCTTTGTCTCCCTGTTGGGATGTGGCTCTTCATCAG  150

seq1  AGCTACAAAGCTGAGAGTGAAGGTCAGCGTCTGAGCATCCCTTTGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAGCTGAGAGTGAAGGTCAGCGTCTGAGCATCCCTTTGCATTC  200

seq1  CATGTGAGTGCTGTCCGATGGCCTCACTGCATGACCAGGGCTGAGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGTGCTGTCCGATGGCCTCACTGCATGACCAGGGCTGAGCTCAT  250

seq1  GTCTTCGGGTGCTTAATGTACGCTGAGGGATGCTCCACAGAGATTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGGGTGCTTAATGTACGCTGAGGGATGCTCCACAGAGATTTAATT  300

seq1  GTCATCAGCTCCTGTGGAAGATACAGACCTGTCCTCTTCTTTTGAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGCTCCTGTGGAAGATACAGACCTGTCCTCTTCTTTTGAAAAAG  350

seq1  TACAAAAATGCCTGAGACTATCTCAAATATGTCACTATTATCAACAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATGCCTGAGACTATCTCAAATATGTCACTATTATCAACAGTTG  400

seq1  TATTTATAGTATCCTTCACAGAGTGAGTGGTATGACAAGACACAAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGTATCCTTCACAGAGTGAGTGGTATGACAAGACACAAGCAAG  450

seq1  GAGCACTTTATGTCATGACTCATCGCTAGAGAGGAATATACCAAAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTTATGTCATGACTCATCGCTAGAGAGGAATATACCAAAATTCT  500

seq1  CAAATGTGATTGCATTGGTTTATTTTCACGTGAAATACAAACTACCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGATTGCATTGGTTTATTTTCACGTGAAATACAAACTACCAAGT  550

seq1  GTAACTTCTGGCCATTCATTGTTAAGGTTGTTTGAACAAAACTTATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGGCCATTCATTGTTAAGGTTGTTTGAACAAAACTTATTGCC  600

seq1  ACATCAGTCATGTCCTACAAAAGCAATATGCCTTTCCCTTAAAATTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCATGTCCTACAAAAGCAATATGCCTTTCCCTTAAAATTTATC  650

seq1  TACCTTTAAAGTCCTTAAGTTGATGATAAAAGAAATAAAACTCAATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAAAGTCCTTAAGTTGATGATAAAAGAAATAAAACTCAATCACA  700

seq1  CTTGATATACTTACTACCTGATTTTTCTTAGTATCGGAAACTACTGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATACTTACTACCTGATTTTTCTTAGTATCGGAAACTACTGTTGG  750

seq1  AATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGT  800

seq1  AGCAGAAGATGGCCTTGTCGGCCATCACTGGGAAGAGAGGCCCCTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGATGGCCTTGTCGGCCATCACTGGGAAGAGAGGCCCCTTGCAA  850

seq1  ACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTG  900

seq1  GGTGGGTAGGGGAGCA  916
      ||||||||||||||||
seq2  GGTGGGTAGGGGAGCA  916

seq1: chrX_99938963_99939105
seq2: B6Ng01-093A18.g_108_252 (reverse)

seq1  ATATATATATATATATATATATAT------ATATATATATATATATATGT  44
      ||||||||||||||||||||||||      |||||||||||||| | |||
seq2  ATATATATATATATATATATATATACACACATATATATATATATTTGTGT  50

seq1  ATATATATATATATATATATATATATATATATATATATATATATATTCAT  94
       ||||||||||| | ||||||||| ||||||||||| | | | |||  ||
seq2  GTATATATATATTTGTATATATATGTATATATATATTTGTGTGTATAAAT  100

seq1  ATTCCTCCACTGGCTTAACAT-TTTATACACACACAAACAGACACACACA  143
      |||  | ||     |  | || | |||| | | ||| ||| |||||||||
seq2  ATTTGTACA-----TATATATATATATATATATACACACACACACACACA  145