BAC Information

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BAC

Clone NameB6Ng01-095M12
Chromosome1 (Build37)
Map Location 88,969,266 - 89,114,940
singlet/doubletdoublet
Overlap geneAkp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2
Upstream genePsmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256
Downstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095M12.bB6Ng01-095M12.g
ACCDH906628DH906629
length8641,151
definitionDH906628|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M12, 5' end.DH906629|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,969,266 - 88,970,137)(89,113,781 - 89,114,940)
sequence
gaattccagtcctgcatcctttggtgatgaatagcagtgtggaaagtgta
agctgaataaactctttcctcctcaacttgcttcttggtcatgatgtgtt
gtgtaggaatagaaaccctgactaagacaaatgtgtctcaggctctgact
aggaaaggccctaaggggtcagggctagtagtttcccatctccctatagg
tagtccactgcagattcacggaggctgcctcagagttggcagcctgccct
agaaattatccaggctttccaccccaccatcccaggaggaccctagcctt
cctgggctcttacagggcagcagtgagcattaacatgtgaccaggggttc
tggatacatgttccaaggctccctcctgcctcctgcagagatggaggttc
ataggtcaccaagtcaaggtcacagctcaaggatggtggaggaacctgga
ggcaagaagctgggagccaggaataggagacctcaacctcacctgtgggg
tgtggaggaagagtggggacatccgctgcagatgcttcatagctagcaac
atccttgtactcagagaagtccttctggaagatctgggcctgcaacttta
aattttcaagggctactttttttcttcttttggttttttgagacagggtt
tctctgtatagtcctggctatcctagaaggggctacttttagtgatggtt
cttaaacttttttttgttttgttttgtttgttttgttgttgttgtgtttt
caagacaggtttctctgtatagccctggctgtcctggaactcactctgta
gaccaggcttggtctcgaactctgatatccacctgactctgaatccaagt
gctggaataaaggc
gaattctctctctacattgatttcatccaagagagcaaagaccaagaatt
tagaagctaggccagctttagggtccatgaaagaatcaagactcggagca
aaaggaataggcaatccagaaagagaaaggtgttggaactgatgagcaag
cagagctggacactgccatctgtctgctgctcagaggtatcaccagtgct
tagtaaacttcctttcccttggttaaacttgttttgcttggtttcctttt
caagtcgagcctgccttggacacaagacccatggattaaaaattaccaac
atttaccaagcagctcaccgggtaccagagtacctgtcctccaagaactg
aggagagataaggtatacaaaggctcaactaggtgcaaagggccattctg
ttagcatgtctacaaacattccctgcctgttcccaatgaaccccttccac
cctgctgtgtccattcatttgaacaagaatatctcatggatttttctact
gcttcagtctcatctagggacacaagcccttttgttttctcttcagctcc
taattcctactacagcctctaaagtcactttactagagtttggttgaaga
aggacagtcacctaggacttctcatttttgccagcccaagaaaagtgttc
tattcctttcttttctagtggttttcttttagacactactaggaaacaaa
aagaaaacaaaaacagttaaggcagagaagaaacaatgctattatcattt
tgaagccatctcagactcctttctaagccagcaaataggaacctcaatgg
acttcatttttgtctttttacgccctgacctttattttagttttggctgt
gctggtaattaaatccagcacctccttcaaaaatgcaaggactctacaat
taaacatttgctttctctctcctgcccccccctttccctttctctcacat
cctatgaaagagtctctcttatgtagccatggctttcctggactcactat
gtatacaaggcagtcactaaacttcgaagcttcgtcctacttggaattta
agaggtgtgtgccccatacctatgctgcttctctcctcctccgacataag
cgagaacttaagcaagcagcctgctttcagaatcggtctctggctaaagc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88969266_88970137
seq2: B6Ng01-095M12.b_48_911

seq1  GAATTCCAGTCCTGCATCCTTTGGTGATGAATAGCAGTGTGGAAAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGCATCCTTTGGTGATGAATAGCAGTGTGGAAAGTGTA  50

seq1  AGCTGAATAAACTCTTTCCTCCTCAACTTGCTTCTTGGTCATGATGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACTCTTTCCTCCTCAACTTGCTTCTTGGTCATGATGTGTT  100

seq1  GTGTAGGAATAGAAACCCTGACTAAGACAAATGTGTCTCAGGCTCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAATAGAAACCCTGACTAAGACAAATGTGTCTCAGGCTCTGACT  150

seq1  AGGAAAGGCCCTAAGGGGTCAGGGCTAGTAGTTTCCCATCTCCCTATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCCCTAAGGGGTCAGGGCTAGTAGTTTCCCATCTCCCTATAGG  200

seq1  TAGTCCACTGCAGATTCACGGAGGCTGCCTCAGAGTTGGCAGCCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCACTGCAGATTCACGGAGGCTGCCTCAGAGTTGGCAGCCTGCCCT  250

seq1  AGAAATTATCCAGGCTTTCCACCCCACCATCCCAGGAGGACCCTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATCCAGGCTTTCCACCCCACCATCCCAGGAGGACCCTAGCCTT  300

seq1  CCTGGGCTCTTACAGGGCAGCAGTGAGCATTAACATGTGACCAGGGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTCTTACAGGGCAGCAGTGAGCATTAACATGTGACCAGGGGTTC  350

seq1  TGGATACATGTTCCAAGGCTCCCTCCTGCCTCCTGCAGAGATGGAGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACATGTTCCAAGGCTCCCTCCTGCCTCCTGCAGAGATGGAGGTTC  400

seq1  ATAGGTCACCAAGTCAAGGTCACAGCTCAAGGATGGTGGAGGAACCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCACCAAGTCAAGGTCACAGCTCAAGGATGGTGGAGGAACCTGGA  450

seq1  GGCAAGAAGCTGGGAGCCAGGAATAGGAGACCTCAACCTCACCTGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAGCTGGGAGCCAGGAATAGGAGACCTCAACCTCACCTGTGGGG  500

seq1  TGTGGAGGAAGAGTGGGGACATCCGCTGCAGATGCTTCATAGCTAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGAAGAGTGGGGACATCCGCTGCAGATGCTTCATAGCTAGCAAC  550

seq1  ATCCTTGTACTCAGAGAAGTCCTTCTGGAAGATCTGGGCCTGCAACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTACTCAGAGAAGTCCTTCTGGAAGATCTGGGCCTGCAACTTTA  600

seq1  AATTTTCAAGGGCTACTTTTTTTCTTCTTTTGGTTTTTTGAGACAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAAGGGCTACTTTTTTTCTTCTTTTGGTTTTTTGAGACAGGGTT  650

seq1  TCTCTGTATAGTCCTGGCTATCCTAGAAGGGGCTACTTTTAGTGATGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGTCCTGGCTATCCTAGAAGGGGCTACTTTTAGTGATGGTT  700

seq1  CTTAAACTTTTTTTTGTTTTTGTTTTTGTTTTGTTTTTGTTGTTGTTGTT  750
      ||||||||||||||||       ||||||||||||| | |||||||||||
seq2  CTTAAACTTTTTTTTG-------TTTTGTTTTGTTTGTTTTGTTGTTGTT  743

seq1  GT-TTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  799
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAAGACA-GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  792

seq1  ACTCTGTAGACCAGGC-TGGTCTCGAACTCAGAAATCCACCTGACTCTGA  848
      |||||||||||||||| ||||||||||||| || ||||||||||||||||
seq2  ACTCTGTAGACCAGGCTTGGTCTCGAACTCTGATATCCACCTGACTCTGA  842

seq1  ATCCCAAGTGCTGGGATTAAAGGC  872
      || ||||||||| ||| |||||||
seq2  AT-CCAAGTGCT-GGAATAAAGGC  864

seq1: chr1_89113781_89114940
seq2: B6Ng01-095M12.g_68_1218 (reverse)

seq1  TGCTTTAAGCCAGGAAGAACCGATTCTGAAAAGCAGGCCTGCCTTTGCTT  50
      |||||| ||||||  || |||||||||| |||||||| ||||  ||||||
seq2  TGCTTT-AGCCAG--AG-ACCGATTCTG-AAAGCAGG-CTGC--TTGCTT  42

seq1  AGGTCTCT-GCTTATGTGCAGA-GAGGAGATGAAAGCAGCCTAGGTATGG  98
      | || ||| |||||||| | || |||||||   ||||||| ||||||| |
seq2  AAGT-TCTCGCTTATGT-CGGAGGAGGAGA--GAAGCAGCATAGGTAT-G  87

seq1  GGGCACACA-CTCTTAAAATCCCAGGTAGACGAAGC-TCTGAGTTTAGTG  146
      ||||||||| |||||||| ||| ||   |||||||| ||  |||||||||
seq2  GGGCACACACCTCTTAAATTCCAAGTAGGACGAAGCTTCGAAGTTTAGTG  137

seq1  CCTGCCTGGTATACATAGTGAGTTCCAGGACAGCCATGGCTACAT-AGAG  195
       |||||| |||||||||||||| ||||||| |||||||||||||| ||||
seq2  ACTGCCTTGTATACATAGTGAG-TCCAGGAAAGCCATGGCTACATAAGAG  186

seq1  AGACCTCTTTTCATAAGATGTGAGAGAAAGGG-AAGGGGGGGGCAGGAGA  244
      ||| ||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  AGA-CTC-TTTCATAGGATGTGAGAGAAAGGGAAAGGGGGGGGCAGGAGA  234

seq1  GAGAAAGC-AATGTTTATTGGTAGAGTCCTTGCCTTCTGTGAAGGAGGTG  293
      |||||||| |||||||| | ||||||||||||| || | |||||||||||
seq2  GAGAAAGCAAATGTTTAATTGTAGAGTCCTTGCATT-TTTGAAGGAGGTG  283

seq1  CTGGATTTTATTACCAGCACAGCCAAAACTAAAATAAAGGTCAGGGCGTA  343
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTAATTACCAGCACAGCCAAAACTAAAATAAAGGTCAGGGCGTA  333

seq1  AAAAGAC-AAAATGAAGTCCATTGAGGTTCCTATTTGCTGGCTTAGAAAG  392
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAAAATGAAGTCCATTGAGGTTCCTATTTGCTGGCTTAGAAAG  383

seq1  GAGTCTGAGATGGCTTCAAAATGATAATAGCATTGTTTCTTCTCTGCCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAGATGGCTTCAAAATGATAATAGCATTGTTTCTTCTCTGCCTT  433

seq1  AACTGTTTTTGTTTTCTTTTTGTTTCCTAGTAGTGTCTAAAAGAAAACCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTTGTTTTCTTTTTGTTTCCTAGTAGTGTCTAAAAGAAAACCA  483

seq1  CTAGAAAAGAAAGGAATAGAACACTTTTCTTGGGCTGGCAAAAATGAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGAAAGGAATAGAACACTTTTCTTGGGCTGGCAAAAATGAGAA  533

seq1  GTCCTAGGTGACTGTCCTTCTTCAACCAAACTCTAGTAAAGTGACTTTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGTGACTGTCCTTCTTCAACCAAACTCTAGTAAAGTGACTTTAG  583

seq1  AGGCTGTAGTAGGAATTAGGAGCTGAAGAGAAAACAAAAGGGCTTGTGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAGTAGGAATTAGGAGCTGAAGAGAAAACAAAAGGGCTTGTGTC  633

seq1  CCTAGATGAGACTGAAGCAGTAGAAAAATCCATGAGATATTCTTGTTCAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAGACTGAAGCAGTAGAAAAATCCATGAGATATTCTTGTTCAA  683

seq1  ATGAATGGACACAGCAGGGTGGAAGGGGTTCATTGGGAACAGGCAGGGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGACACAGCAGGGTGGAAGGGGTTCATTGGGAACAGGCAGGGAA  733

seq1  TGTTTGTAGACATGCTAACAGAATGGCCCTTTGCACCTAGTTGAGCCTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGACATGCTAACAGAATGGCCCTTTGCACCTAGTTGAGCCTTT  783

seq1  GTATACCTTATCTCTCCTCAGTTCTTGGAGGACAGGTACTCTGGTACCCG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCTTATCTCTCCTCAGTTCTTGGAGGACAGGTACTCTGGTACCCG  833

seq1  GTGAGCTGCTTGGTAAATGTTGGTAATTTTTAATCCATGGGTCTTGTGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGCTTGGTAAATGTTGGTAATTTTTAATCCATGGGTCTTGTGTC  883

seq1  CAAGGCAGGCTCGACTTGAAAAGGAAACCAAGCAAAACAAGTTTAACCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGCTCGACTTGAAAAGGAAACCAAGCAAAACAAGTTTAACCAA  933

seq1  GGGAAAGGAAGTTTACTAAGCACTGGTGATACCTCTGAGCAGCAGACAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGAAGTTTACTAAGCACTGGTGATACCTCTGAGCAGCAGACAGA  983

seq1  TGGCAGTGTCCAGCTCTGCTTGCTCATCAGTTCCAACACCTTTCTCTTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGTCCAGCTCTGCTTGCTCATCAGTTCCAACACCTTTCTCTTTC  1033

seq1  TGGATTGCCTATTCCTTTTGCTCCGAGTCTTGATTCTTTCATGGACCCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCTATTCCTTTTGCTCCGAGTCTTGATTCTTTCATGGACCCTA  1083

seq1  AAGCTGGCCTAGCTTCTAAATTCTTGGTCTTTGCTCTCTTGGATGAAATC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCCTAGCTTCTAAATTCTTGGTCTTTGCTCTCTTGGATGAAATC  1133

seq1  AATGTAGAGAGAGAATTC  1160
      ||||||||||||||||||
seq2  AATGTAGAGAGAGAATTC  1151