BAC Information

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BAC

Clone NameB6Ng01-096C10
Chromosome1 (Build37)
Map Location 51,636,844 - 51,753,639
singlet/doubletdoublet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096C10.bB6Ng01-096C10.g
ACCDH906894DH906895
length1,1911,159
definitionDH906894|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C10, 5' end.DH906895|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,752,448 - 51,753,639)(51,636,844 - 51,638,020)
sequence
gaattctcacttgattctttacggctgttaaacacaaagaacaaagtggc
cagcaataattgtgtcacatttaaccttgagctttgcagaggcctggatt
gcctgagagtctgagctttggacctgagaatgtggcttggtatagtcctg
acctaacacacacaaacaccaccactgcataaatcagggcgtggtgatgc
tctctatggaggtggaaggattctcagccacacagtgagttaaggccagt
gtgagatacatgagactatctcaaaacacacaaaaatctgggctttggaa
ctgaatggaagtagattaaaacctttgctttagtacatcagggcaacact
gggtccttgtgtctcagtttttttgtttgtttgtttgttttttctgtatg
gttaagttgaaatgacattttgtgtgtaaaggaagtaacaaaaaagtatg
aaataaacatattagtgtaaaatgggctctattcattaatttcctgggtt
ctcatgctccgtgtcattggctttaatcttgagccagtgacctcattatc
cgtgagtgaccctggtgcttaaccttagcactcatagtgctcaggtttaa
gaccagagcatctcagcctcaggtgtataaaaagcccttctgaaactgtg
tgcgaagctttatgaaaggtggagtgaggaggatcaggaatttaaggtca
tcctacataccaaagggctaacctaggttatatgacacccaatctcaaac
aaacaaacaaacaaacaaacagttcttcttacatgagatagacagtacga
gttctgggttggggcttggatagctcagaagaagatagtgtgtaatactc
ccagactgaaatcctgagatatggcccttgaagatgacagtatgaagctc
tacaattctgttttctgccctttcacacagtactactctcccaccatcca
gtcctgacatggacatactacttggggtgtctcttctgcctttctcttcc
tggaatatccttttggcatgcttccacctgctggactctttgaccttggt
tgatccctcttgcacagcatcattcagacttcctggatggcatctctttc
ttctttcatgtagcctcttgtcacagcctttacatctgcggtatcatgag
tctcctggtatattggtataaggcaactcttctctggctat
gaattctctattctcctgcttcagcctcctgagtgctaggatcccaggca
tatgccaccacacccaggtgtttttgttaacattcaaaacgagaagcaaa
aaaaaagaacctttattcagttaaggagagattatgaccatagtgagcct
ggccagcagagctacacctagtgagcagggattctgaggccaggcgaggg
ggatgctaatcttctccccagcctggattctgctgtcagaaagaagcgtc
tctattcattccgggtcagggctcaagaataatcctaagtctctggtggt
caaaggttttcagtccctctgtaattagttcctcatttgctcagactggc
tcgaatctgtgtaccaggagccccacccagacttcctccatgaacacaat
tactaaccctgctttcccttcgcatctttacctctctcccacatgtacct
gttgatgtcgttgtctctgcagtcataagaaaaagacaacgttctgagct
ggatttcagcactgggaccttccctgccaggcatttccagctctgcttcc
atttgatagggtcgagaattacacacagctttataaacacttggatagcc
cacgtttcttctttctgtgtatttctttatatttatgcttaaaaaaaaaa
cagccagctatttacagaatctgttttgaattctaatgctttcctgataa
caacctacacacatcataaaattttattttcctagtctttgcctaaagcc
tgggactctggtaagtgccagctctgtttttaggcagctctgatgatggg
atccagcccgttctaaggcagtgtcacatggatctctgcttccatccagc
tactgtcttcctcactacccagtgtcagccttcatattatatcttatgag
cagttagtgcctcctttcaatcccactgtctccagtagttaggattatgt
cagtaatgaaagaaaaccttcaatcttcagtatctcaacagactagagca
ttgtttcatgtacactggagcaggagcatcaggagattctgctcacagtc
ctcagcatttctcccacagtttcttctagctcagcctgactaacagcaga
gatgggcagagattggagttcttgtgaaagatttgggagtcagtctctga
actcttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51752448_51753639
seq2: B6Ng01-096C10.b_45_1235 (reverse)

seq1  ATAGCAAGAGAAGAGTCTGCCCTATACCAAAATA-CAAGAGACTCATGAA  49
      ||||| |||||||||| |||| |||||||| ||| || |||||||||| |
seq2  ATAGCCAGAGAAGAGT-TGCCTTATACCAATATACCAGGAGACTCATG-A  48

seq1  TACCGCAGGATGTAAA-GCTGCTGAC-AGA-GCTACATGGAAGAAGAAAG  96
      ||||||| |||||||| |||| |||| ||| |||||||| ||||||||||
seq2  TACCGCA-GATGTAAAGGCTG-TGACAAGAGGCTACATGAAAGAAGAAAG  96

seq1  AGATGGCACTCAGGGAAGACTG-ATGATGCTGTGCAAGAGGAGATCACCC  145
      ||||| || ||  ||||| ||| |||||||||||||||||| ||||| ||
seq2  AGATGCCA-TCCAGGAAGTCTGAATGATGCTGTGCAAGAGG-GATCAACC  144

seq1  AAGGTCAAGGAGTCCAGCAGGTGGAAGCATGCCAAAAGGATATTCCAGGA  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAAGAGTCCAGCAGGTGGAAGCATGCCAAAAGGATATTCCAGGA  194

seq1  AGAGAAAGGCAGAGGAGACACCCCAAGTAGTATGTCCATGTCAGGACTGG  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGCAGAAGAGACACCCCAAGTAGTATGTCCATGTCAGGACTGG  244

seq1  ATGGTGGGAGAGTAGTACTGTGTGAAAGGGCAGAAAACAGAATTGTAGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGAGAGTAGTACTGTGTGAAAGGGCAGAAAACAGAATTGTAGAG  294

seq1  CTTCATACTGTCATCTTCAAGGGCCATATCTCAGGATTTCAGTCTGGGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATACTGTCATCTTCAAGGGCCATATCTCAGGATTTCAGTCTGGGAG  344

seq1  TATTACACACTATCTTCTTCTGAGCTATCCAAGCCCCAACCCAGAACTCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACACTATCTTCTTCTGAGCTATCCAAGCCCCAACCCAGAACTCG  394

seq1  TACTGTCTATCTCATGTAAGAAGAACTGTTTGTTTGTTTGTTTGTTTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTATCTCATGTAAGAAGAACTGTTTGTTTGTTTGTTTGTTTGTT  444

seq1  TGAGATTGGGTGTCATATAACCTAGGTTAGCCCTTTGGTATGTAGGATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGGGTGTCATATAACCTAGGTTAGCCCTTTGGTATGTAGGATGA  494

seq1  CCTTAAATTCCTGATCCTCCTCACTCCACCTTTCATAAAGCTTCGCACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTCCTGATCCTCCTCACTCCACCTTTCATAAAGCTTCGCACAC  544

seq1  AGTTTCAGAAGGGCTTTTTATACACCTGAGGCTGAGATGCTCTGGTCTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAAGGGCTTTTTATACACCTGAGGCTGAGATGCTCTGGTCTTA  594

seq1  AACCTGAGCACTATGAGTGCTAAGGTTAAGCACCAGGGTCACTCACGGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGCACTATGAGTGCTAAGGTTAAGCACCAGGGTCACTCACGGAT  644

seq1  AATGAGGTCACTGGCTCAAGATTAAAGCCAATGACACGGAGCATGAGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTCACTGGCTCAAGATTAAAGCCAATGACACGGAGCATGAGAAC  694

seq1  CCAGGAAATTAATGAATAGAGCCCATTTTACACTAATATGTTTATTTCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATTAATGAATAGAGCCCATTTTACACTAATATGTTTATTTCAT  744

seq1  ACTTTTTTGTTACTTCCTTTACACACAAAATGTCATTTCAACTTAACCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTGTTACTTCCTTTACACACAAAATGTCATTTCAACTTAACCAT  794

seq1  ACAGAAAAAACAAACAAACAAACAAAAAAACTGAGACACAAGGACCCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAACAAACAAACAAACAAAAAAACTGAGACACAAGGACCCAGT  844

seq1  GTTGCCCTGATGTACTAAAGCAAAGGTTTTAATCTACTTCCATTCAGTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTGATGTACTAAAGCAAAGGTTTTAATCTACTTCCATTCAGTTC  894

seq1  CAAAGCCCAGATTTTTGTGTGTTTTGAGATAGTCTCATGTATCTCACACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCAGATTTTTGTGTGTTTTGAGATAGTCTCATGTATCTCACACT  944

seq1  GGCCTTAACTCACTGTGTGGCTGAGAATCCTTCCACCTCCATAGAGAGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAACTCACTGTGTGGCTGAGAATCCTTCCACCTCCATAGAGAGCA  994

seq1  TCACCACGCCCTGATTTATGCAGTGGTGGTGTTTGTGTGTGTTAGGTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACGCCCTGATTTATGCAGTGGTGGTGTTTGTGTGTGTTAGGTCAG  1044

seq1  GACTATACCAAGCCACATTCTCAGGTCCAAAGCTCAGACTCTCAGGCAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATACCAAGCCACATTCTCAGGTCCAAAGCTCAGACTCTCAGGCAAT  1094

seq1  CCAGGCCTCTGCAAAGCTCAAGGTTAAATGTGACACAATTATTGCTGGCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTCTGCAAAGCTCAAGGTTAAATGTGACACAATTATTGCTGGCC  1144

seq1  ACTTTGTTCTTTGTGTTTAACAGCCGTAAAGAATCAAGTGAGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCTTTGTGTTTAACAGCCGTAAAGAATCAAGTGAGAATTC  1191

seq1: chr1_51636844_51638020
seq2: B6Ng01-096C10.g_69_1227

seq1  GAATTCTCTATTCTCCTGCTTCAGCCTCCTGAGTGCTAGGATCCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTCTCCTGCTTCAGCCTCCTGAGTGCTAGGATCCCAGGCA  50

seq1  TATGCCACCACACCCAGGTGTTTTTGTTAACATTCAAAACGAGAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACCACACCCAGGTGTTTTTGTTAACATTCAAAACGAGAAGCAAA  100

seq1  AAAAAAGAACCTTTATTCAGTTAAGGAGAGATTATGACCATAGTGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACCTTTATTCAGTTAAGGAGAGATTATGACCATAGTGAGCCT  150

seq1  GGCCAGCAGAGCTACACCTAGTGAGCAGGGATTCTGAGGCCAGGCGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGAGCTACACCTAGTGAGCAGGGATTCTGAGGCCAGGCGAGGG  200

seq1  GGATGCTAATCTTCTCCCCAGCCTGGATTCTGCTGTCAGAAAGAAGCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAATCTTCTCCCCAGCCTGGATTCTGCTGTCAGAAAGAAGCGTC  250

seq1  TCTATTCATTCCGGGTCAGGGCTCAAGAATAATCCTAAGTCTCTGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATTCCGGGTCAGGGCTCAAGAATAATCCTAAGTCTCTGGTGGT  300

seq1  CAAAGGTTTTCAGTCCCTCTGTAATTAGTTCCTCATTTGCTCAGACTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTTTCAGTCCCTCTGTAATTAGTTCCTCATTTGCTCAGACTGGC  350

seq1  TCGAATCTGTGTACCAGGAGCCCCACCCAGACTTCCTCCATGAACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCTGTGTACCAGGAGCCCCACCCAGACTTCCTCCATGAACACAAT  400

seq1  TACTAACCCTGCTTTCCCTTCGCATCTTTACCTCTCTCCCACATGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACCCTGCTTTCCCTTCGCATCTTTACCTCTCTCCCACATGTACCT  450

seq1  GTTGATGTCGTTGTCTCTGCAGTCATAAGAAAAAGACAACGTTCTGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTCGTTGTCTCTGCAGTCATAAGAAAAAGACAACGTTCTGAGCT  500

seq1  GGATTTCAGCACTGGGACCTTCCCTGCCAGGCATTTCCAGCTCTGCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGCACTGGGACCTTCCCTGCCAGGCATTTCCAGCTCTGCTTCC  550

seq1  ATTTGATAGGGTCGAGAATTACACACAGCTTTATAAACACTTGGATAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAGGGTCGAGAATTACACACAGCTTTATAAACACTTGGATAGCC  600

seq1  CACGTTTCTTCTTTCTGTGTATTTCTTTATATTTATGCTTAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTCTTCTTTCTGTGTATTTCTTTATATTTATGCTTAAAAAAAAAA  650

seq1  CAGCCAGCTATTTACAGAATCTGTTTTGAATTCTAATGCTTTCCTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTATTTACAGAATCTGTTTTGAATTCTAATGCTTTCCTGATAA  700

seq1  CAACCTACACACATCATAAAATTTTATTTTCCTAGTCTTTGCCTAAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACACACATCATAAAATTTTATTTTCCTAGTCTTTGCCTAAAGCC  750

seq1  TGGGACTCTGGTAAGTGCCAGCTCTGTTTTTAGGCAGCTCTGATGATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTGGTAAGTGCCAGCTCTGTTTTTAGGCAGCTCTGATGATGGG  800

seq1  ATCCAGCCCGTTCTAAGGCAGTGTCACATGGATCTCTGCTTCCCATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCCAGCCCGTTCTAAGGCAGTGTCACATGGATCTCTGCTT-CCATCCAG  849

seq1  CTACTGTCTTCCTCACTACCCAGTGTCAGCCTTCATATTATATCTTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCTTCCTCACTACCCAGTGTCAGCCTTCATATTATATCTTATGA  899

seq1  GCAGTTAGTGCCTCCTTTCAAATCCCACTGTCTCCAGTAGTTAGGATTAT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAGTTAGTGCCTCCTTTC-AATCCCACTGTCTCCAGTAGTTAGGATTAT  948

seq1  GTCAGTAATGAAAGAAAAACCTTCAAATCTCAGTATCTCAACAGACTAGA  1000
      |||||||||||||| |||||||||||   |||||||||||||||||||||
seq2  GTCAGTAATGAAAG-AAAACCTTCAATCTTCAGTATCTCAACAGACTAGA  997

seq1  GCATTGGTTCATGTAACAACTGGAGGCAGGAGCAATCAGGAGATTCTGCT  1050
      |||||| ||||||||   |||||| |||||||| ||||||||||||||||
seq2  GCATTGTTTCATGTA--CACTGGA-GCAGGAGC-ATCAGGAGATTCTGCT  1043

seq1  CACAGTCCCTCAGCAATGTCTCCCACAAGTGTCTTCTAGGCTCAGCCTGA  1100
      |||||| ||||||| || |||||||| ||| ||||||| |||||||||| 
seq2  CACAGT-CCTCAGC-ATTTCTCCCAC-AGTTTCTTCTA-GCTCAGCCTG-  1088

seq1  ACTAACAGCAGAGATGGGCAGAGATTTGAAGGTCTTGTGAAAGATATTGT  1150
      |||||||||||||||||||||||| ||| || ||||||||||||| ||| 
seq2  ACTAACAGCAGAGATGGGCAGAGA-TTGGAGTTCTTGTGAAAGAT-TTGG  1136

seq1  GAGTCAGTCCTCTGGAAACATCTTACT  1177
      |||||||| |||||  ||| |||||||
seq2  GAGTCAGT-CTCTG--AAC-TCTTACT  1159