BAC Information

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BAC

Clone NameB6Ng01-096K24
Chromosome1 (Build37)
Map Location 84,760,029 - 84,939,856
singlet/doubletdoublet
Overlap geneTrip12, Fbxo36, Slc16a14
Upstream gene5033414K04Rik, LOC100039638, Dner
Downstream geneLOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K24.bB6Ng01-096K24.g
ACCDH907267DH907268
length1,123448
definitionDH907267|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K24, 5' end.DH907268|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,938,752 - 84,939,856)(84,760,029 - 84,760,482)
sequence
gaattcaacattgggagggtgggggactgttaaaaataactaccaagtct
cttggagacctgctgcccggcattcttagaaaaacctaacgtacttttta
cactctggggaacattttgaagaaacaaaacaggcatcttcttatatacc
ccagcacgatcgtcacaactctgacaggtccaaagacaaacagagcaaga
tcacgatttgacagtctctagaccccaaacagaagaagccattaaactca
ttattcttggttaaagtgatccaggtccatgctctgccactaaaatgtca
tgttttgtgcctcctttaatctggactatccccaaatactggttcttcag
acactttcatttttgtggatttttgttctgcagtgctgagctgcctgtgt
gctggccaagagctcctctgtgagtcacaggttcatccccttgacactgg
ccttggaagagtactgggccattattctgaaaaatgtcaatgaacttggg
tttgtctgatggtacctcataggaagagagagagagagggatggatagat
agatagatagatagatagatagatagatagatagatagatagatagaatt
atcagacattatgttacatagttttttgttaaggattcgaactggcttca
gtggttaagagcactgacttgctcttccagaggacccagatttcaactcc
cagcagccatatggtggctcacaaccgtctgtaagtgcagtttctggtct
tttaggtaccaggcacacacatagttacacaaaacacactacctacaggg
caacacatgtctactcataaacttaataaacctaaaacttaaaacgacag
ccagacagatgttggttttttttaaacaaacaggtctttctacgtagccc
tgtctgttctgcccacttctacagaccaagctggcctcaaacacaacaga
aatccacctgccttctgcctcccagtgctggcatttaaagttgtgcccaa
ttacaccctgctcagaaaaaattcattaaaaagatcttgtccgacggggc
aagcaaaccttagccggatgtcagcctgtgcatgaatcactctcagccat
acagtaaatttcctttttcatca
tagatacaacaagcaatctgccaaaccaccctgaaatatagaaaactgtt
ttaaagtggagaaaataatatcctttataaaaagcaactactaaaatgtc
tagcacagtacttcagagcagcatgtgcatcttacagagctacagtcaag
gaattagcacaatgtagttcaacaataaagaaaacacaccttaagccagg
cagtgatggcgcacacctttaatcccagaatttgagaggcagaagcaggc
ggatcactgagtttgaggacagcctggtctatagagagtgagttccaaga
cagccagggctacagagaaaacaaaaaaacaaacaaaaaaaaaacaaaaa
caaccccacactttatcgataacacttaccgcttgtaaaatggctttact
gtgtccccgtgacaacatcttcaaggcagttaaggcctgctctgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84938752_84939856
seq2: B6Ng01-096K24.b_45_1167 (reverse)

seq1  TGATGAAAA--GAAA--TACTGTA-GGCTG-GAGTGA-TCATGCA-AGGC  42
      |||||||||  ||||  ||||||| ||||| |||||| ||||||| ||||
seq2  TGATGAAAAAGGAAATTTACTGTATGGCTGAGAGTGATTCATGCACAGGC  50

seq1  TG-CATCCGGCTGAGG-TTGCTTGCCCCGTC-GAC-AGATC-TTTTAATG  87
      || ||||||||| ||| |||||||||||||| ||| ||||| ||||||||
seq2  TGACATCCGGCTAAGGTTTGCTTGCCCCGTCGGACAAGATCTTTTTAATG  100

seq1  -ATTTTTTCTAGGCAAGGTGTAATGGGGCACACCTTT-AATGCCAGCACT  135
       |||||||||  ||| |||||||| ||||||| |||| ||||||||||| 
seq2  AATTTTTTCTGAGCAGGGTGTAATTGGGCACAACTTTAAATGCCAGCAC-  149

seq1  TGGGAGGCAG-AGGCAGGTGGATATCTG-TGTGTTTGAGGCCAGCTTGGT  183
      |||||||||| |||||||||||| |||| |||||||||||||||||||||
seq2  TGGGAGGCAGAAGGCAGGTGGATTTCTGTTGTGTTTGAGGCCAGCTTGGT  199

seq1  CTGTAG-AGTGGGCAGAACAGACAGGGCTACGTAGAAAGACCTGTTTGTT  232
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAGTGGGCAGAACAGACAGGGCTACGTAGAAAGACCTGTTTGTT  249

seq1  T-AAAAAAACCAACATCTGTCTGGCTGTCGTTTTAAGTTTTAGGTTTATT  281
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAAAAAACCAACATCTGTCTGGCTGTCGTTTTAAGTTTTAGGTTTA-T  298

seq1  TATGTTTATGTGTAGACATGTGTTG-CCTGTAGGTAGTGTG-TTTGTGTA  329
      || ||||||| |||||||||||||| ||||||||||||||| ||||||||
seq2  TAAGTTTATGAGTAGACATGTGTTGCCCTGTAGGTAGTGTGTTTTGTGTA  348

seq1  ACTATGTGTGTGCCTGGTACCTAAAAGACCAGAAACTGCACTTACAGACG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGTGTGCCTGGTACCTAAAAGACCAGAAACTGCACTTACAGACG  398

seq1  GTTGTGAGCCACCATATGGCTGCTGGGAGTTG-AATCTGGGTCCTCTGGA  428
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTGTGAGCCACCATATGGCTGCTGGGAGTTGAAATCTGGGTCCTCTGGA  448

seq1  AGAGC-AGTCAGTGCTCTTAACCACTG-AGCCAGTTCGAATCCTTAACAA  476
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGCAAGTCAGTGCTCTTAACCACTGAAGCCAGTTCGAATCCTTAACAA  498

seq1  AAAACTATGTAACATAATGTCTGATAATTCTATCTATCTATCTATCTATC  526
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  AAAACTATGTAACATAATGTCTGATAAT----TCTATCTATCTATCTATC  544

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCTCTCTC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCTCTCTC  594

seq1  TCTCTTCCTATGAGGTACCATCAGACAAACCCAAGTTCATTGACATTTTT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTATGAGGTACCATCAGACAAACCCAAGTTCATTGACATTTTT  644

seq1  CAGAATAATGGCCCAGTACTCTTCCAAGGCCAGTGTCAAGGGGATGAACC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATGGCCCAGTACTCTTCCAAGGCCAGTGTCAAGGGGATGAACC  694

seq1  TGTGACTCACAGAGGAGCTCTTGGCCAGCACACAGGCAGCTCAGCACTGC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCACAGAGGAGCTCTTGGCCAGCACACAGGCAGCTCAGCACTGC  744

seq1  AGAACAAAAATCCACAAAAATGAAAGTGTCTGAAGAACCAGTATTTGGGG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAAATCCACAAAAATGAAAGTGTCTGAAGAACCAGTATTTGGGG  794

seq1  ATAGTCCAGATTAAAGGAGGCACAAAACATGACATTTTAGTGGCAGAGCA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCAGATTAAAGGAGGCACAAAACATGACATTTTAGTGGCAGAGCA  844

seq1  TGGACCTGGATCACTTTAACCAAGAATAATGAGTTTAATGGCTTCTTCTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGGATCACTTTAACCAAGAATAATGAGTTTAATGGCTTCTTCTG  894

seq1  TTTGGGGTCTAGAGACTGTCAAATCGTGATCTTGCTCTGTTTGTCTTTGG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTCTAGAGACTGTCAAATCGTGATCTTGCTCTGTTTGTCTTTGG  944

seq1  ACCTGTCAGAGTTGTGACGATCGTGCTGGGGTATATAAGAAGATGCCTGT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGAGTTGTGACGATCGTGCTGGGGTATATAAGAAGATGCCTGT  994

seq1  TTTGTTTCTTCAAAATGTTCCCCAGAGTGTAAAAAGTACGTTAGGTTTTT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTCAAAATGTTCCCCAGAGTGTAAAAAGTACGTTAGGTTTTT  1044

seq1  CTAAGAATGCCGGGCAGCAGGTCTCCAAGAGACTTGGTAGTTATTTTTAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATGCCGGGCAGCAGGTCTCCAAGAGACTTGGTAGTTATTTTTAA  1094

seq1  CAGTCCCCCACCCTCCCAATGTTGAATTC  1105
      |||||||||||||||||||||||||||||
seq2  CAGTCCCCCACCCTCCCAATGTTGAATTC  1123

seq1: chr1_84760029_84760482
seq2: B6Ng01-096K24.g_67_520

seq1  GAATTCTAGATACAACAAGCAATCTGCCAAACCACCCTGAAATATAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATACAACAAGCAATCTGCCAAACCACCCTGAAATATAGAAA  50

seq1  ACTGTTTTAAAGTGGAGAAAATAATATCCTTTATAAAAAGCAACTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAAAGTGGAGAAAATAATATCCTTTATAAAAAGCAACTACTAA  100

seq1  AATGTCTAGCACAGTACTTCAGAGCAGCATGTGCATCTTACAGAGCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAGCACAGTACTTCAGAGCAGCATGTGCATCTTACAGAGCTACA  150

seq1  GTCAAGGAATTAGCACAATGTAGTTCAACAATAAAGAAAACACACCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAATTAGCACAATGTAGTTCAACAATAAAGAAAACACACCTTAA  200

seq1  GCCAGGCAGTGATGGCGCACACCTTTAATCCCAGAATTTGAGAGGCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGTGATGGCGCACACCTTTAATCCCAGAATTTGAGAGGCAGAA  250

seq1  GCAGGCGGATCACTGAGTTTGAGGACAGCCTGGTCTATAGAGAGTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATCACTGAGTTTGAGGACAGCCTGGTCTATAGAGAGTGAGTT  300

seq1  CCAAGACAGCCAGGGCTACAGAGAAAACAAAAAAACAAACAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGCCAGGGCTACAGAGAAAACAAAAAAACAAACAAAAAAAAAA  350

seq1  CAAAAACAACCCCACACTTTATCGATAACACTTACCGCTTGTAAAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAACCCCACACTTTATCGATAACACTTACCGCTTGTAAAATGGC  400

seq1  TTTACTGTGTCGCCGTGACAACATCTCCAAGGCAGTCAAGGCCTGCTCTG  450
      ||||||||||| |||||||||||||| ||||||||| |||||||||||||
seq2  TTTACTGTGTCCCCGTGACAACATCTTCAAGGCAGTTAAGGCCTGCTCTG  450

seq1  CCAC  454
      ||||
seq2  CCAC  454