BAC Information

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BAC

Clone NameB6Ng01-097L04
Chromosome1 (Build37)
Map Location 165,882,450 - 165,883,597
singlet/doubletsinglet
Overlap geneScyl3
Upstream geneFmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3
Downstream geneBC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097L04.bB6Ng01-097L04.g
ACCDH907997DH907998
length1,1331,151
definitionDH907997|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L04, 5' end.DH907998|Mus musculus domesticus DNA, BAC clone: B6Ng01-097L04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcctgaagcttttcattatcgtcaccagttgttatcttcccag
gctagctcttctccttcccagccttctgcctctccctgcaacagaacaca
ctgacactagctgtctgcggcaaattgtgtacacatctgaaaagccaagc
atttaaaaatgacccagagagaatgccttatgataagaaacgataaagct
gttaccaaaagttaaaagcaagattagttctgatgttaaaaaccacaccc
attggaaagtaagtgtgcaacacagtgacatctttccccacatcgaggag
ttactcatttagcaggtggacccagatgtggccaaggacagttatacaca
aggcacaaaacagaagatataaaatgggtttgtatttttaaaaaacattg
atgtgcatgcatatatctatgccccactgtgtctggtgcctgtacaggtc
ggagggattgaatctcctggaactcgagttaacagatcatttcatgtgac
gcatcctgagaaagccagcaatcaaacccaggcctccagaatagcccgta
ttgttaaccatagagccatcttggtagtttgatttctttaaaattctgaa
ccatgaacactgtagatgatagcattgtgtcatgttaacaggttgggcat
gtctgaaggactagttcctttttgtagcactctgaaataattttctagga
actggttgtattatttctgggtttactttgaacatttttagtcagctgtg
cactctgttctttcgttgataaaaatgcttgtttattgctagctaggact
tctgagagaaaccctgacagtagcacgcttattacaaagaaagaactcac
ctcggtcatttctgttgcagcaaactttgaggaaaactgcatcagtgatg
agacgttatccttgtcaggaccatcacttctgtccttagttcagcagata
agaaaagtacctgaaggcttatttctgggatcatatctgcaaaccagtca
ctccgggtctgtactggcttctttttactgatggtaactctctcccaaac
cagtcctgacggagccttcagggtcttcttggtgacacttggggtggttg
gactctcatgctgtctatggactggtctttgag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggagagctagagaaagtacccaagagctaaagggatctcaaccctatag
gtggacacatatgactacagtaccctgagctcttgactctagctgcatat
gtatcaaagatgctagtcgcatcactggaaagagaggtcatgaccgcgac
tttgtgtgctcgttcagggaacgccaagtccaagggaaatgatcgttagt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165882450_165883597
seq2: B6Ng01-097L04.b_43_1175 (reverse)

seq1  CTCAAAGACCAGT-CATAGACAGCATGAGGAAGTCAAACCACCCCAAGTG  49
      ||||||||||||| |||||||||||||||  |||| ||||||||||||||
seq2  CTCAAAGACCAGTCCATAGACAGCATGAG--AGTCCAACCACCCCAAGTG  48

seq1  TCACAAGAAAGACCCCTGAAGGCTCCGTCAGGACTTGGTTTGGGAGAAGA  99
      |||| |  |||| ||||||||||||||||||||| ||||||||||| |||
seq2  TCACCAAGAAGA-CCCTGAAGGCTCCGTCAGGAC-TGGTTTGGGAG-AGA  95

seq1  GTTTACCATTCAAGTAAAAAAGAAGCCAGTACAAGACCCGGAGTTGGACT  149
      | |||||||   ||| |||||||||||||||| |||||||||||  ||||
seq2  G-TTACCAT--CAGT-AAAAAGAAGCCAGTAC-AGACCCGGAGT--GACT  138

seq1  GGTTTGCAGATATGATCCCAGAAATTAAGCCTTCAGGTACTTTTCTTATT  199
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  GGTTTGCAGATATGATCCCAGAAA-TAAGCCTTCAGGTACTTTTCTTA-T  186

seq1  CTGCCTGAACTAAGGACAGAAGTGATGGTCCCTGACAAGGATAACGTCTC  249
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTG-CTGAACTAAGGACAGAAGTGATGGT-CCTGACAAGGATAACGTCTC  234

seq1  ATCACTGATGCAGTTTTCCTCAAAGTTTGCTGCAACAGAAATGACCGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGATGCAGTTTTCCTCAAAGTTTGCTGCAACAGAAATGACCGAGG  284

seq1  TGAGTTCTTTCTTTGTAATAAGCGTGCTACTGTCAGGGTTTCTCTCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTTTCTTTGTAATAAGCGTGCTACTGTCAGGGTTTCTCTCAGAA  334

seq1  GTCCTAGCTAGCAATAAACAAGCATTTTTATCAACGAAAGAACAGAGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCTAGCAATAAACAAGCATTTTTATCAACGAAAGAACAGAGTGC  384

seq1  ACAGCTGACTAAAAATGTTCAAAGTAAACCCAGAAATAATACAACCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGACTAAAAATGTTCAAAGTAAACCCAGAAATAATACAACCAGTT  434

seq1  CCTAGAAAATTATTTCAGAGTGCTACAAAAAGGAACTAGTCCTTCAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAATTATTTCAGAGTGCTACAAAAAGGAACTAGTCCTTCAGACA  484

seq1  TGCCCAACCTGTTAACATGACACAATGCTATCATCTACAGTGTTCATGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACCTGTTAACATGACACAATGCTATCATCTACAGTGTTCATGGT  534

seq1  TCAGAATTTTAAAGAAATCAAACTACCAAGATGGCTCTATGGTTAACAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTTAAAGAAATCAAACTACCAAGATGGCTCTATGGTTAACAAT  584

seq1  ACGGGCTATTCTGGAGGCCTGGGTTTGATTGCTGGCTTTCTCAGGATGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTATTCTGGAGGCCTGGGTTTGATTGCTGGCTTTCTCAGGATGCG  634

seq1  TCACATGAAATGATCTGTTAACTCGAGTTCCAGGAGATTCAATCCCTCCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAAATGATCTGTTAACTCGAGTTCCAGGAGATTCAATCCCTCCG  684

seq1  ACCTGTACAGGCACCAGACACAGTGGGGCATAGATATATGCATGCACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACAGGCACCAGACACAGTGGGGCATAGATATATGCATGCACATC  734

seq1  AATGTTTTTTAAAAATACAAACCCATTTTATATCTTCTGTTTTGTGCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTAAAAATACAAACCCATTTTATATCTTCTGTTTTGTGCCTT  784

seq1  GTGTATAACTGTCCTTGGCCACATCTGGGTCCACCTGCTAAATGAGTAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAACTGTCCTTGGCCACATCTGGGTCCACCTGCTAAATGAGTAAC  834

seq1  TCCTCGATGTGGGGAAAGATGTCACTGTGTTGCACACTTACTTTCCAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGATGTGGGGAAAGATGTCACTGTGTTGCACACTTACTTTCCAATG  884

seq1  GGTGTGGTTTTTAACATCAGAACTAATCTTGCTTTTAACTTTTGGTAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTTTTTAACATCAGAACTAATCTTGCTTTTAACTTTTGGTAACA  934

seq1  GCTTTATCGTTTCTTATCATAAGGCATTCTCTCTGGGTCATTTTTAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCGTTTCTTATCATAAGGCATTCTCTCTGGGTCATTTTTAAATG  984

seq1  CTTGGCTTTTCAGATGTGTACACAATTTGCCGCAGACAGCTAGTGTCAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTTCAGATGTGTACACAATTTGCCGCAGACAGCTAGTGTCAGT  1034

seq1  GTGTTCTGTTGCAGGGAGAGGCAGAAGGCTGGGAAGGAGAAGAGCTAGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTTGCAGGGAGAGGCAGAAGGCTGGGAAGGAGAAGAGCTAGCC  1084

seq1  TGGGAAGATAACAACTGGTGACGATAATGAAAAGCTTCAGGAAGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATAACAACTGGTGACGATAATGAAAAGCTTCAGGAAGAATTC  1133