BAC Information

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BAC

Clone NameB6Ng01-098H22
Chromosome1 (Build37)4 (Build37)
Map Location 78,884,816 - 78,884,890145,468,479 - 145,469,583
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
Downstream geneEG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H22.bB6Ng01-098H22.g
ACCDH908571DH908572
length9651,091
definitionDH908571|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H22, 5' end.DH908572|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,884,816 - 78,884,890)(145,468,479 - 145,469,583)
sequence
gaattcttaggtacatggatgcatctggaggatatcatcctgagtgagat
aatccaatcacaaaaaaaatacatgatatgcactcactgaaaagcagata
ttagcccagaaacttagaatatccaagatataatttgcaaagcatgcaaa
acacaaaaagaaggaagacccaagtgtggatacttagatccttcttagaa
ggaggtacaaaatatccatggaaggagttacagagacaaagtttggagct
gagactgaaggaaggaccatccagagactgccccacccggggatccatcc
ccaaaacaaccaccacacccagagactattgcagatgtcaacaagagttt
gctggcaggaccctaatacagctgtcctctgtgaggatatgccagtgcct
agcaaatacagaagtggatgttcacagtcatcaattggatggagcacaga
gtccccaatgaaggagctagagaaagcacccaaggagctgaaggagtctg
cagccctataggaggaacaacaatatgaactaaccagtaaccccagagct
ccctgggactaaaccaccagtcaaagaaaacaaggttgtactcatgtctc
tacctgtatatgttacagtgatggcctagtcggccatcaatgggaggaga
ggcccttggtcttgcaaagggtctatgccccaacatagaggaatgccagg
tccaggaagagggagtgggtggcttggggagcaggcggagggggaaaggg
aatacgggattttcggagaagaaaataggaaaggggatagcatttgaaat
gtaagtgaagaaaatatctaataaaaaatatattttaaaaatgtaaagaa
agaatagggtagatagataaacaaagttttctcactgaggaatcttgaat
ggctgagaagcactaaagaaatgacattctagtcatagggaaatgcaaat
agatcaaactcctgt
gaattctaagcatgttctgagttataaatactcccagcaattttcagata
ggctttaagcattctgattgctatgtctatgttgcatcatgtggtttata
tcagtaagaattttctatagatgttgatgggatactgtgctgaagactcc
tattcaaaagcataaaggaatatcccatttaatgactttgctcttttatt
tggagttataaggctctcctactccatgtttttccccttcctgtagctat
ggttcatgtaggttgagattctgaagagcaatcatggtggacagatgcag
agaacctaccttaggtgggaaagggtcctaaggagctaatgggagtggtg
agagaatgacttgttattaatgatggatgcaagctgacagctctgtactc
tgtggagacaagtctctaaatagctctttgcagatgaaacctactttgca
tgagctacttccttaggaattacaaatgattacaaacatttactccaggt
tctctcttgattattatgagtcagcattttaaaaccttagaacctttact
cctagttaaaaaagaaaacaaaacaaaatgaaaaaaaaaacagaagtaca
tttgttttgtttgtttgctttgttttgttcttaagtgtagcagctcctat
gtatgttgcttgcatgcactttctggacatagagattattttattattac
tcttttcttttctctttcttcctttcttccttccttccttccctcctttc
attttttccacactctagatttattgccctccctgtccatcctctaacta
ttccacatcccacacttcctgcccacctctctgtctccatatcccttcct
cctccccaccttctaaacaccctggaacctccaatctctccaggggtgag
atgcatgctccctgattgaacccagaatccagcattcttccactgcataa
tgtgataggcctcttattagcaagtgcatgcttctggttgatgatcgagt
gttctgagaaggtcttgggggttcaagtaattgagaactgctgttcctcc
taacaggggcctcttctttcctcaagcttcttcagctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78884816_78884890
seq2: B6Ng01-098H22.b_568_645 (reverse)

seq1  CATGAGTCTCTGTGTGTTTTCTT----TGGTGGTTTAGTCCCAGGGAGCT  46
      |||||||       |||||||||    |||||||||||||||||||||||
seq2  CATGAGTACAACCTTGTTTTCTTTGACTGGTGGTTTAGTCCCAGGGAGCT  50

seq1  CTGGGGGGTACTGGTTAGTTCATATTGTT  75
      || |||| |||||||||||||||||||||
seq2  CT-GGGGTTACTGGTTAGTTCATATTGTT  78

seq1: chr4_145468479_145469583
seq2: B6Ng01-098H22.g_68_1158

seq1  GAATTCTAAGCATGTTCTGAGTTATAAATGCTCCCAGCAATTTTCAGATA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTAAGCATGTTCTGAGTTATAAATACTCCCAGCAATTTTCAGATA  50

seq1  GGCTTTAAGCATTCTGATTGCTCTGTCTATGTTGCATCATGTGGTTTATA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCTTTAAGCATTCTGATTGCTATGTCTATGTTGCATCATGTGGTTTATA  100

seq1  TCAGTAAGAATTTTCTATAGATGTTGATGGGATACTGTGCTGAAGAATCC  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGTAAGAATTTTCTATAGATGTTGATGGGATACTGTGCTGAAGACTCC  150

seq1  TATTCAAAAGCATAAAGGAATATCCCATTTAATGACTTTGCTCTTTTATT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTCAAAAGCATAAAGGAATATCCCATTTAATGACTTTGCTCTTTTA-T  199

seq1  TTGGAGTTATAAGGCTCTCCTACTCCATGTTTTTCCCCTTCCTGTAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTATAAGGCTCTCCTACTCCATGTTTTTCCCCTTCCTGTAGCTA  249

seq1  TGGTTCATGTAGGTTGAGATTCTGAAAAGCAATCATGGTGGACAGATGCA  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGTTCATGTAGGTTGAGATTCTGAAGAGCAATCATGGTGGACAGATGCA  299

seq1  GAGAACCTACCTTAGGTGGGAAAGGGTCCTAAGGAGCTAATGGGAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTACCTTAGGTGGGAAAGGGTCCTAAGGAGCTAATGGGAGTGGT  349

seq1  GAGAGAATGACTTGTTATTAATGATGGATGCAAGCTGACAGCTCTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGACTTGTTATTAATGATGGATGCAAGCTGACAGCTCTGTACT  399

seq1  CTGTGGAGACAAGTCTCTAAATAGCTTTTTGCAGATGAAACCTACTTTGC  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGGAGACAAGTCTCTAAATAGCTCTTTGCAGATGAAACCTACTTTGC  449

seq1  ATGAGCTACTTCCTTAGGAATTACGAATGATTACAAACATTTACTCCAGG  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGAGCTACTTCCTTAGGAATTACAAATGATTACAAACATTTACTCCAGG  499

seq1  TTCTCTCTCGATTATTCTGAGTCAGCATTTTAAAACCTTAGAACCTTTAC  550
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTGATTATTATGAGTCAGCATTTTAAAACCTTAGAACCTTTAC  549

seq1  TCCTAGTTACAAAAGAAAACAAAACAAAACGAAAAAAAAAAAAACCAGAA  600
      ||||||||| ||||||||||||||||||| |||||||||||    |||||
seq2  TCCTAGTTAAAAAAGAAAACAAAACAAAATGAAAAAAAAAA----CAGAA  595

seq1  GTACATTTGTTTTGTTTGTTTGCTTTGTTTTGTTCTTAAGTGTAGCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGTTTTGTTTGTTTGCTTTGTTTTGTTCTTAAGTGTAGCAGCT  645

seq1  CCTATGTATGTTGCTTGCATGCACTTTCTGGACATAGAGATTATTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTATGTTGCTTGCATGCACTTTCTGGACATAGAGATTATTTTATT  695

seq1  ATTACTCTTTTCTTTTCTCTTTCTTCCTTTCTTCCTTCCTTCCTGTCTTC  750
      ||||||||||||||||||||||||||||||||||            ||||
seq2  ATTACTCTTTTCTTTTCTCTTTCTTCCTTTCTTC------------CTTC  733

seq1  CTTCCTTCCCTCCTTTCATTTTTTCCATACTCTAGATTTATTGCCCTCCC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTCCTTCCCTCCTTTCATTTTTTCCACACTCTAGATTTATTGCCCTCCC  783

seq1  TGTCCATCCTCTAACTATTCCACATCCCACACTTCCTGCCCACCTCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCCTCTAACTATTCCACATCCCACACTTCCTGCCCACCTCTCTG  833

seq1  TCTCCATATCCCTTCCTCCTCCACACCTTCTAAACACACTGGAACCTCCA  900
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCTCCATATCCCTTCCTCCTCCCCACCTTCTAAACACCCTGGAACCTCCA  883

seq1  ATCTCTCCAGGGGTTAGATGCATGCTCCCTGATTGAACCCAG-ATCCAGC  949
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  ATCTCTCCAGGGGTGAGATGCATGCTCCCTGATTGAACCCAGAATCCAGC  933

seq1  ATTCTTCCACTGCAT-ATGTGATAGGGGCCTCTTATTAGCAGGTGCATGC  998
      ||||||||||||||| ||||||||  ||||||||||||||| ||||||||
seq2  ATTCTTCCACTGCATAATGTGATA--GGCCTCTTATTAGCAAGTGCATGC  981

seq1  TTCCTGGTTGATGATCGAGTG-TCTGAG-AGGTCTTGGGGGTTCAGGTTA  1046
      || |||||||||||||||||| |||||| |||||||||||||||| | ||
seq2  TT-CTGGTTGATGATCGAGTGTTCTGAGAAGGTCTTGGGGGTTCAAG-TA  1029

seq1  ATTGAG-ACTGCTGGTCCTCCT-ACAGGGGGCCCTTC-TTCCTC-AGCTT  1092
      |||||| ||||||| ||||||| ||||||| | |||| |||||| |||||
seq2  ATTGAGAACTGCTGTTCCTCCTAACAGGGGCCTCTTCTTTCCTCAAGCTT  1079

seq1  CTTCCAGCTTTCC  1105
      ||| |||||||||
seq2  CTT-CAGCTTTCC  1091