BAC Information

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BAC

Clone NameB6Ng01-098H23
Chromosome1 (Build37)
Map Location 88,337,927 - 88,470,634
singlet/doubletdoublet
Overlap geneLOC100040414, Ptma, Pde6d
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Downstream geneCops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H23.bB6Ng01-098H23.g
ACCDH908573DH908574
length1,116743
definitionDH908573|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H23, 5' end.DH908574|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,469,541 - 88,470,634)(88,337,927 - 88,338,664)
sequence
gaattcaaggtcaccatggattgcaggaaaccctatctcaaaaaacagta
acactagtgctaatatcctctagaacataaggtaatgtctttaggtgcgc
acgtctgtgaatacaggtagcagccagaggtcagtctaaagagttgattc
tcaagcaccaatatcaagtggtccaccttgtctgagacaggatctagaac
tcgccagttggcctaggggaggtggtcaggagccccctgtttccttcctt
ccaatacttgtattgcaagcctgtgccaccatgccttgctcttttgtgtg
ggttccaagatcagaacatgcttgcttcttacatgcttgcctggcaagca
ctttaccagctgagctattttcccagccataagaattccttctgttttta
caattatttatatttatgtatatgtgtgagtgcctacatgtgtgtattcc
cacttgtgtatctggtaccctcagtgtccagaagagggtgtctaatcccc
tgaaactggagttaggtagttgtgagccacttgatattggtgctaggaac
caagcctgggtcctctagaagagcagcagtgttgttaaccactgagccat
ctcttcagcccccactcatatttcatttgagaattattcttttctgttgt
acttacatcctctatgttttttattttttcctcatctcttaaattcaggg
gcagcctgggataaagaaaggtaatttttaacaactagtcacctagaaag
ggaaagatacttcttgggaagtatttaaattgcaaatggctatctacttt
ttaatattaatatttcatttgtatgtatctgcctggatgtgtattaaaag
tattcctacattaggcctctggaggtcagaatagtgtgttcagatcccct
gggaactaagagctacaggcagctgatagttaccattatgggttgctggg
aagttgaagcctggtccttctgaaagagtaagtaagcactcttagctacc
gagccatcttctctagcaccaaataggataattcttgaatttcctttttt
ttggtttccatttcacacatagacttgaggtaaaggaaaaggctattcac
agtgaatacagttagc
gaattcctcgatccccctgcaccccaaggtctgagataacgaaccactac
ccagttgttttttaattaaatgttttgaagccctgagttcctacttctat
atcctctgcctcccaggaaccgccccctcctcctacacacacacacacac
acacacacacacacgcacacaccctcctcctacatgcgcgcgcgcgcaca
cacacacacacaccctcctcctatacacacacacacacacacacacacac
acacacacacacgcagcttcacttaggcaaatcatgggtttctctgcttc
tagaagcagactctaggccaccatagccacgtgctgttgtgtgacccttt
cttccttcaccccccaccccgcccagcgccctcaccccataataggcaga
ggcagcagcacaaataaacaagaggacatatatgaaccgagaccagtctc
tgccacctcccaccaccgagttcagttcctccattaaaaaaaaaaaaaaa
tccaaattggaaaaggtttgagagtcaacgggtccatcttacaccaacac
ttttcttttctatgggagaggaggggtggttgttggggcgctgcctctcc
agatctcagccaaatttacaagaccagactaaggctgggcagcggccggc
tcgaagagggaaactctagcccggaggcgggaactggggcacgtcccgct
ttgggaggccccgagcccggcatctctaaaaataggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88469541_88470634
seq2: B6Ng01-098H23.b_45_1160 (reverse)

seq1  GCTAACTGTATTC-CTGTGATTAGCCTTTT-CTTTA-CTACAGTCTATGT  47
      ||||||||||||| |||||| ||||||||| ||||| ||  |||||||||
seq2  GCTAACTGTATTCACTGTGAATAGCCTTTTCCTTTACCTCAAGTCTATGT  50

seq1  TTAAAATGGAAAC--AAAAAAAGTGAAATCAAGAATATACCTATTTGGTG  95
       | ||||||||||  ||||||||  || ||||||||   |||||||||||
seq2  GTGAAATGGAAACCAAAAAAAAGGAAATTCAAGAATTATCCTATTTGGTG  100

seq1  CTAGAG-AGATGGCTCGGTAGCTAAGAGTGCTTAC-TACTC-TTCAG-AG  141
      |||||| |||||||||||||||||||||||||||| ||||| ||||| ||
seq2  CTAGAGAAGATGGCTCGGTAGCTAAGAGTGCTTACTTACTCTTTCAGAAG  150

seq1  GACCAGGCTTCAAC-TCCCAGC-ACCCAT-ATGGTAACTATCAGCTGCCT  188
      |||||||||||||| ||||||| |||||| ||||||||||||||||||||
seq2  GACCAGGCTTCAACTTCCCAGCAACCCATAATGGTAACTATCAGCTGCCT  200

seq1  GTAGCTC-TAGTT-CCAGGGGATCTG-ACACACTATTCTGACCTCCAGAG  235
      ||||||| ||||| |||||||||||| |||||||||||||||||||||||
seq2  GTAGCTCTTAGTTCCCAGGGGATCTGAACACACTATTCTGACCTCCAGAG  250

seq1  G-CTAATGTAGGAATAC-TTTAATACACATCCAGGCAGATACATAC-AAT  282
      | ||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  GCCTAATGTAGGAATACTTTTAATACACATCCAGGCAGATACATACAAAT  300

seq1  GAAATA-TAATATTAAAAAGTAGATAGCCATTTGCAATTTAAATACTTCC  331
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAATATTAAAAAGTAGATAGCCATTTGCAATTTAAATACTTCC  350

seq1  CAAGAAGTATCTTTCCCCTTCTAGGTGACTAGTTGTT-AAAATTACCTTT  380
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  CAAGAAGTATCTTTCCCTTTCTAGGTGACTAGTTGTTAAAAATTACCTTT  400

seq1  C-TTATCCCAGGCTGCCCCTGAATTTAAGAGATGAGGAAAAAAT-AAAAA  428
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTATCCCAGGCTGCCCCTGAATTTAAGAGATGAGGAAAAAATAAAAAA  450

seq1  CATAGAGGATGTAAGTACAACAGAAAAGAATAATTCTCAAATGAAATATG  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGGATGTAAGTACAACAGAAAAGAATAATTCTCAAATGAAATATG  500

seq1  AGTGGGGGCTGAAGAGATGGCTCAGTGGTTAACAACACTGCTGCTCTTCT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCTGAAGAGATGGCTCAGTGGTTAACAACACTGCTGCTCTTCT  550

seq1  AGAGGACCCAGGCTTGGTTCCTAGCACCAATATCAAGTGGCTCACAACTA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCAGGCTTGGTTCCTAGCACCAATATCAAGTGGCTCACAACTA  600

seq1  CCTAACTCCAGTTTCAGGGGATTAGACACCCTCTTCTGGACACTGAGGGT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCCAGTTTCAGGGGATTAGACACCCTCTTCTGGACACTGAGGGT  650

seq1  ACCAGATACACAAGTGGGAATACACACATGTAGGCACTCACACATATACA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATACACAAGTGGGAATACACACATGTAGGCACTCACACATATACA  700

seq1  TAAATATAAATAATTGTAAAAACAGAAGGAATTCTTATGGCTGGGAAAAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAATAATTGTAAAAACAGAAGGAATTCTTATGGCTGGGAAAAT  750

seq1  AGCTCAGCTGGTAAAGTGCTTGCCAGGCAAGCATGTAAGAAGCAAGCATG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTGGTAAAGTGCTTGCCAGGCAAGCATGTAAGAAGCAAGCATG  800

seq1  TTCTGATCTTGGAACCCACACAAAAGAGCAAGGCATGGTGGCACAGGCTT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTTGGAACCCACACAAAAGAGCAAGGCATGGTGGCACAGGCTT  850

seq1  GCAATACAAGTATTGGAAGGAAGGAAACAGGGGGCTCCTGACCACCTCCC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACAAGTATTGGAAGGAAGGAAACAGGGGGCTCCTGACCACCTCCC  900

seq1  CTAGGCCAACTGGCGAGTTCTAGATCCTGTCTCAGACAAGGTGGACCACT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAACTGGCGAGTTCTAGATCCTGTCTCAGACAAGGTGGACCACT  950

seq1  TGATATTGGTGCTTGAGAATCAACTCTTTAGACTGACCTCTGGCTGCTAC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGGTGCTTGAGAATCAACTCTTTAGACTGACCTCTGGCTGCTAC  1000

seq1  CTGTATTCACAGACGTGCGCACCTAAAGACATTACCTTATGTTCTAGAGG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCACAGACGTGCGCACCTAAAGACATTACCTTATGTTCTAGAGG  1050

seq1  ATATTAGCACTAGTGTTACTGTTTTTTGAGATAGGGTTTCCTGCAATCCA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCACTAGTGTTACTGTTTTTTGAGATAGGGTTTCCTGCAATCCA  1100

seq1  TGGTGACCTTGAATTC  1094
      ||||||||||||||||
seq2  TGGTGACCTTGAATTC  1116

seq1: chr1_88337927_88338664
seq2: B6Ng01-098H23.g_68_810

seq1  GAATTCCTCGATCCCCCTGCACCCCAAGGTCTGAGATAACGAACCACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGATCCCCCTGCACCCCAAGGTCTGAGATAACGAACCACTAC  50

seq1  CCAGTTGTTTTTTAATTAAATGTTTTGAAGCCCTGAGTTCCTACTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTTTTTTAATTAAATGTTTTGAAGCCCTGAGTTCCTACTTCTAT  100

seq1  ATCCTCTGCCTCCCAGGAACCGCCCCCTCCTCCTACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGCCTCCCAGGAACCGCCCCCTCCTCCTACACACACACACACAC  150

seq1  ACACACACACACACGCACACACCCTCCTCCTACATGCGCGCGCGCGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACGCACACACCCTCCTCCTACATGCGCGCGCGCGCACA  200

seq1  CACACACACACACCCTCCTCCTATACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACCCTCCTCCTATACACACACACACACACACACACACAC  250

seq1  ACACACACACACGCAGCTTCACTTAGGCAAATCATGGGTTTCTCTGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACGCAGCTTCACTTAGGCAAATCATGGGTTTCTCTGCTTC  300

seq1  TAGAAGCAGACTCTAGGCCACCATAGCCACGTGCTGTTGTGTGACCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAGACTCTAGGCCACCATAGCCACGTGCTGTTGTGTGACCCTTT  350

seq1  CTTCCTTCACCCCCCACCCCGCCCAGCGCCCTCACCCCATAATAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCACCCCCCACCCCGCCCAGCGCCCTCACCCCATAATAGGCAGA  400

seq1  GGCAGCAGCACAAATAAACAAGAGGACATATATGAACCGAGACCAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCACAAATAAACAAGAGGACATATATGAACCGAGACCAGTCTC  450

seq1  TGCCACCTCCCACCACCGAGTTCAGTTCCTCCATTAAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTCCCACCACCGAGTTCAGTTCCTCCATTAAAAAAAAAAAAAAA  500

seq1  TCCAAATTGGAAAAGGTTTGAGAGTCAACGGGTCCATCTTACACCAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTGGAAAAGGTTTGAGAGTCAACGGGTCCATCTTACACCAACAC  550

seq1  TTTTCTTTTCTATGGGAGAGGAGGGGTGGTTGTTGGGGCGCTGCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTATGGGAGAGGAGGGGTGGTTGTTGGGGCGCTGCCTCTCC  600

seq1  AGATCTCAGCCAAATTTACAAGACCAGACT-AGGCTGGGCAGCGGCCGGC  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGATCTCAGCCAAATTTACAAGACCAGACTAAGGCTGGGCAGCGGCCGGC  650

seq1  ACG-AGAGGGAAACTCTAGCCCGGAGGCGGGAACT-GGGCACGTCCCGCT  697
       || ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCGAAGAGGGAAACTCTAGCCCGGAGGCGGGAACTGGGGCACGTCCCGCT  700

seq1  GTGGGAGGCCCGGAG-CCGGCATCTCT-AAAATTGGGGGGTGG  738
       |||||||||| ||| ||||||||||| ||||| |||||||||
seq2  TTGGGAGGCCCCGAGCCCGGCATCTCTAAAAATAGGGGGGTGG  743