BAC Information

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BAC

Clone NameB6Ng01-098J01
Chromosome1 (Build37)
Map Location 83,100,446 - 83,271,709
singlet/doubletdoublet
Overlap geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
Downstream geneEG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098J01.bB6Ng01-098J01.g
ACCDH908621DH908622
length1,0941,074
definitionDH908621|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J01, 5' end.DH908622|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,100,446 - 83,101,549)(83,270,628 - 83,271,709)
sequence
gaattcatggtagagctggccttctctactatgtgacctgctactgatgg
gttagcaatctttgagtgacatgtttcttagttctaaaagacagcagggg
ctcaattgatgaagtacttgccatctaagcattagaatatgactacatat
aatcgacaaccaaataaaaagccagctagggtggtacatgtatgtgatgc
ctccagtgctgtggaaggagtgagacagaaggatccctggaacttgttag
ccagacagtctagccaactggtgagctccaggcccagagagaccctcacc
aaaaaataaggtggagagccactgagggagccactgaaactgacctctgg
cttcttcatgcatgcgcacacacaggaacatctaggtcacaatgcacaca
aattgactggcacatgggggctattaaggactactgtaggaccttatgac
atttccttaggtaatatgcaagatactccttagaaggaactcatgaaaaa
ttgcaaaactattctttaatttggtattttcttcatgatgcttgccagtc
tctccatgccttggctttgtacatccccagagtgatttttatttatttat
atttttaccttcttttttatagcaattttatagttagtcatttgcaacac
ttaaaaccaggacattttgattttcctgaggatatcttatgattatccct
ccccaaggctatgtgatcttgcagcatcatgggtttatgggccaagtctt
ttccttcaaaattaatgactcataaggaaacagccaatggatatatgaat
atgtactgttttctagagaagacaggtcttttgtttgtttgttgtttttg
tttttttttttaaaccaaaggacagagttatccttctgggtttttgggaa
gattcatctgggcctaagcatgcacaatgtttcttttagtcacaattgac
attaaactagctgctgctgagacatttcttagtgcgtgtagtaggcatgc
ctccctggcatcacacaccacgttatttcagctcagtttgactggagcct
tgcagtaccgtgctgccatgctgctctgtgatcgcaattctctc
gaattcatccccacatccaaaaggatcaagtcacctcctggcccctatag
ttgttgcttagctatgtttcatgtctgattactataaaaccagtcagagc
ctgataaagtgctggtataccttgcttttagctggaaaaaatttcttttg
ggctattttgtaattaactgagaatattcatttgaacattcttcagcatt
ttaggtaatggggcaatactgaaataggatatgtaactatttggaattca
gtaatgattttattctataaacaacttttttcatttgaaaatagctattt
taaataaactttagttttagattttgagattaattgtttttgtttaatca
atggagttaattttctttcctttttttcttttacttttttcttttttttg
ttttttttttttgttttgtttttttgttttgcatcttattctaagaatct
ctattgagactctatgtccaacaaatgccagctctttcgatgcatagcat
aactgttccatggtctatagtgtctctggaattctggcatctagacatcg
cttttccaggagattgtactgtaagcaggaataaactttgaattgtgggc
aaggtaattctttccttcaggctgagaacatcagctcctttcataacttc
cactttctgcacactactcataagagaccactgtactatccctttctttt
tagtccataatgaaaggtcagtaaaacagaaaacaaaaaaaaacaaagtt
caagctttagaagcatacagttcaagaaatgacctgcataatctttttag
agatgtatgtctgccattcattatttacaaaaaggccttagatttttttt
tatatttaaccgggtatatataaagtggaacatagctattaataaatagt
tacagctctctaaaatctggagtacatttgtcccgagcagagagatcaag
gtcctaaggcaccgcccacatggtgtagaaagtatagggtccagtcagag
aggagatttctggtagaaagtgctaagactttctttcattggctaaaccc
agaagcacaggagaaaagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83100446_83101549
seq2: B6Ng01-098J01.b_47_1140

seq1  GAATTCATGGTAGAGCTGGCCTTCTCTACTATGTGACCTGCTACTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTAGAGCTGGCCTTCTCTACTATGTGACCTGCTACTGATGG  50

seq1  GTTAGCAATCTTTGAGTGACATGTTTCTTAGTTCTAAAAGACAGCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAATCTTTGAGTGACATGTTTCTTAGTTCTAAAAGACAGCAGGGG  100

seq1  CTCAATTGATGAAGTACTTGCCATCTAAGCATTAGAATATGACTACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGATGAAGTACTTGCCATCTAAGCATTAGAATATGACTACATAT  150

seq1  AATCGACAACCAAATAAAAAGCCAGCTAGGGTGGTACATGTATGTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACAACCAAATAAAAAGCCAGCTAGGGTGGTACATGTATGTGATGC  200

seq1  CTCCAGTGCTGTGGAAGGAGTGAGACAGAAGGATCCCTGGAACTTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGTGGAAGGAGTGAGACAGAAGGATCCCTGGAACTTGTTAG  250

seq1  CCAGACAGTCTAGCCAACTGGTGAGCTCCAGGCCCAGAGAGACCCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGTCTAGCCAACTGGTGAGCTCCAGGCCCAGAGAGACCCTCACC  300

seq1  AAAAAATAAGGTGGAGAGCCACTGAGGGAGCCACTGAAACTGACCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAGGTGGAGAGCCACTGAGGGAGCCACTGAAACTGACCTCTGG  350

seq1  CTTCTTCATGCATGCGCACACACAGGAACATCTAGGTCACAATGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATGCATGCGCACACACAGGAACATCTAGGTCACAATGCACACA  400

seq1  AATTGACTGGCACATGGGGGCTATTAAGGACTACTGTAGGACCTTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGGCACATGGGGGCTATTAAGGACTACTGTAGGACCTTATGAC  450

seq1  ATTTCCTTAGGTAATATGCAAGATACTCCTTAGAAGGAACTCATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTAGGTAATATGCAAGATACTCCTTAGAAGGAACTCATGAAAAA  500

seq1  TTGCAAAACTATTCTTTAATTTGGTATTTTCTTCATGATGCTTGCCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAACTATTCTTTAATTTGGTATTTTCTTCATGATGCTTGCCAGTC  550

seq1  TCTCCATGCCTTGGCTTTGTACATCCCCAGAGTGATTTTTATTTATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCCTTGGCTTTGTACATCCCCAGAGTGATTTTTATTTATTTAT  600

seq1  ATTTTTACCTTCTTTTTTATAGCAATTTTATAGTTAGTCATTTGCAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCTTCTTTTTTATAGCAATTTTATAGTTAGTCATTTGCAACAC  650

seq1  TTAAAACCAGGACATTTTGATTTTCCTGAGGATATCTTATGATTATCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAGGACATTTTGATTTTCCTGAGGATATCTTATGATTATCCCT  700

seq1  CCCCAAGGCTATGTGATCTTGCAGCATCATGGGTTTATGGGCCAAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGCTATGTGATCTTGCAGCATCATGGGTTTATGGGCCAAGTCTT  750

seq1  TTCCTTCAAAATTAATGACTCATAAGGAAACAGCCAATGGATATATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAAAATTAATGACTCATAAGGAAACAGCCAATGGATATATGAAT  800

seq1  ATGTACTGTTTTCTAGAGAAGACAGGTCTTTTGTTTGTTTGTTTGTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTACTGTTTTCTAGAGAAGACAGGTCTTTTGTTTGTTTG-TTGTTTTT  849

seq1  G-TTTTTTTTTTAAACCAAAGGACAGAGTTATCCTTCTGGGTTTTT-GGA  898
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTTTTTTTTTAAACCAAAGGACAGAGTTATCCTTCTGGGTTTTTGGGA  899

seq1  AGATTCATCT-GGCCTAAGCATGCACAATGTTTCTTTTAGTCACAATTGA  947
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATCTGGGCCTAAGCATGCACAATGTTTCTTTTAGTCACAATTGA  949

seq1  CATTAAACTAGCTGCTGCTTGAGACATTTTCTTTAGTTGCGTGTAGTAGG  997
      |||||||||||||||||| ||||||||||   |||| |||||||||||||
seq2  CATTAAACTAGCTGCTGC-TGAGACATTT--CTTAG-TGCGTGTAGTAGG  995

seq1  CATGCCTCCCTGGCATCACACACCACGTAATTTCAGCTCCAGTTTTGACT  1047
      |||||||||||||||||||||||||||| ||||||||| ||| |||||||
seq2  CATGCCTCCCTGGCATCACACACCACGTTATTTCAGCT-CAG-TTTGACT  1043

seq1  TGAGCCCTTGCCAGTACCCGTGCTGGCCATTGCTTGCTCTGTGTCCGCAT  1097
       ||| ||||| ||||| ||||||| |||| ||| |||||||||  |||| 
seq2  GGAG-CCTTG-CAGTA-CCGTGCT-GCCA-TGC-TGCTCTGTGATCGCAA  1087

seq1  TTCTCTC  1104
      |||||||
seq2  TTCTCTC  1094

seq1: chr1_83270628_83271709
seq2: B6Ng01-098J01.g_67_1140 (reverse)

seq1  TTTTTTCTCTTCTCCTTGTGCTTCTGGGGTTTTAGCCAATTGGAAAGGAA  50
      |||||||| |||||| ||||||||||||  ||||||||||  |||| |||
seq2  TTTTTTCTTTTCTCC-TGTGCTTCTGGG--TTTAGCCAAT--GAAA-GAA  44

seq1  AGTTCTTAGCACTTTCTAACAGGAAATTCTCCTCTCTGACTGGACCCTAT  100
      || ||||||||||||||| |||  || |||||||||||||||||||||||
seq2  AG-TCTTAGCACTTTCTACCAG--AAATCTCCTCTCTGACTGGACCCTAT  91

seq1  ACTTTCTACACCATGTGGGCGGTGCCTTAGGACCTTGATCTCTTCTGCTC  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTTCTACACCATGTGGGCGGTGCCTTAGGACCTTGATCTC-TCTGCTC  140

seq1  GGGACAAATGTACTCCAGATTTTAGAGAGCTGTAACTATTTATTAATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAATGTACTCCAGATTTTAGAGAGCTGTAACTATTTATTAATAGC  190

seq1  TATGTT-CACTTTATATATA-CCGGTTAAATATAAAAAAAAATCTAAGGC  248
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TATGTTCCACTTTATATATACCCGGTTAAATATAAAAAAAAATCTAAGGC  240

seq1  CTTTTTGTAAATAATGAATGGCAGACATACATCTCTAAAAAGATTATGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTAAATAATGAATGGCAGACATACATCTCTAAAAAGATTATGCA  290

seq1  GGTCATTTCTTGAACTGTATGCTTCTAAAGCTTGAACTTTGTTTTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTCTTGAACTGTATGCTTCTAAAGCTTGAACTTTGTTTTTTTTT  340

seq1  GTTTTCTGTTTTACTGACCTTTCATTATGGACTAAAAAGAAAGGGATAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTTTACTGACCTTTCATTATGGACTAAAAAGAAAGGGATAGT  390

seq1  ACAGTGGTCTCTTATGAGTAGTGTGCAGAAAGTGGAAGTTATGAAAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTCTCTTATGAGTAGTGTGCAGAAAGTGGAAGTTATGAAAGGAG  440

seq1  CTGATGTTCTCAGCCTGAAGGAAAGAATTACCTTGCCCACAATTCAAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTCTCAGCCTGAAGGAAAGAATTACCTTGCCCACAATTCAAAGT  490

seq1  TTATTCCTGCTTACAGTACAATCTCCTGGAAAAGCGATGTCTAGATGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTGCTTACAGTACAATCTCCTGGAAAAGCGATGTCTAGATGCCA  540

seq1  GAATTCCAGAGACACTATAGACCATGGAACAGTTATGCTATGCATCGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACACTATAGACCATGGAACAGTTATGCTATGCATCGAAA  590

seq1  GAGCTGGCATTTGTTGGACATAGAGTCTCAATAGAGATTCTTAGAATAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCATTTGTTGGACATAGAGTCTCAATAGAGATTCTTAGAATAAG  640

seq1  ATGCAAAACAAAAAAACAAAACAAAAAAAAAAAACAAAAAAAAGAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAACAAAAAAACAAAACAAAAAAAAAAAACAAAAAAAAGAAAAAA  690

seq1  GTAAAAGAAAAAAAGGAAAGAAAATTAACTCCATTGATTAAACAAAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAAAAAAAGGAAAGAAAATTAACTCCATTGATTAAACAAAAACA  740

seq1  ATTAATCTCAAAATCTAAAACTAAAGTTTATTTAAAATAGCTATTTTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTCAAAATCTAAAACTAAAGTTTATTTAAAATAGCTATTTTCAA  790

seq1  ATGAAAAAAGTTGTTTATAGAATAAAATCATTACTGAATTCCAAATAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAGTTGTTTATAGAATAAAATCATTACTGAATTCCAAATAGTT  840

seq1  ACATATCCTATTTCAGTATTGCCCCATTACCTAAAATGCTGAAGAATGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCTATTTCAGTATTGCCCCATTACCTAAAATGCTGAAGAATGTT  890

seq1  CAAATGAATATTCTCAGTTAATTACAAAATAGCCCAAAAGAAATTTTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATATTCTCAGTTAATTACAAAATAGCCCAAAAGAAATTTTTTC  940

seq1  CAGCTAAAAGCAAGGTATACCAGCACTTTATCAGGCTCTGACTGGTTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAAGCAAGGTATACCAGCACTTTATCAGGCTCTGACTGGTTTTA  990

seq1  TAGTAATCAGACATGAAACATAGCTAAGCAACAACTATAGGGGCCAGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATCAGACATGAAACATAGCTAAGCAACAACTATAGGGGCCAGGAG  1040

seq1  GTGACTTGATCCTTTTGGATGTGGGGATGAATTC  1082
      ||||||||||||||||||||||||||||||||||
seq2  GTGACTTGATCCTTTTGGATGTGGGGATGAATTC  1074