BAC Information

Click to search

BAC

Clone NameB6Ng01-098N13
Chromosome1 (Build37)
Map Location 92,751,875 - 92,897,823
singlet/doubletdoublet
Overlap geneMlph, Prlh, Rab17
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
Downstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098N13.bB6Ng01-098N13.g
ACCDH908811DH908812
length1,170268
definitionDH908811|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N13, 5' end.DH908812|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,896,632 - 92,897,823)(92,751,875 - 92,752,142)
sequence
gaattctcattccaaaccttcagacccttccatgacccttctgatcagat
gggatcttctacagggactgttgatctacaggttcccacccactcttctt
ttttgtgagatagcgtctcactttgtagcccagactggcctccaagtccg
caaacattctcccagcttgccctctcccgtgctaggtgacaagataattc
tacccacattgccagaccccctttttgatccaaatccttgctagttttcc
tgctaactcttggctgtttaggattaactgttggataccatgatcatgga
ttcaagagtgaattggaaaccaagctggagacaattttactagtgtccat
aagaacattaaattattcagggcatagatatttgccacctgaatactgat
ttagcttcacagttggccaacagaattcaatttgtaccagagcagacagc
atcacctgctccctccagtcttttcattgaatgcccctggctctgggtaa
gtgccacatctgtggttgactttcaccattggtttgtcttattcgggggt
gcactcatttcatgcattggttggaaatactttgcctgctgttcctttgt
gtgtcccctaagcctcaggaaatctgcctctctttcagagatgagaccag
ggctgagggggtgggggctgggaagctggctttcctagaccagcacagtt
tagtattgagtggtccgacctgtctggaagctcagtctgactcctgcctg
tctttataactgctgactgcggttccctgggtgtaaggcagaaccatccc
ctggcctctgcttccaatctatttttataccaaccacccgataagaggtt
ggcttacgagactcccaatcttctcattcctttgtcctgcaaccaccagg
atttatggggcactctggccctcccagggacacttatttgctgggtagtc
acagagccacatagagactgttgtaccagaaattatattcaaaccactac
tggtagcaagggtctgtattagtccaagtctctgtacaacaccattaatc
acccactggtgccactgtctctaatgagctcctgataaagaattgctgct
gcccgactgctgccggctgggtggggctctacagcaacactagcctcccc
atctgcacatggccaggtac
tgtgttcaactattaatcaaatgtaaagtcagcaggaagatgctgttagg
gaagccctcaaaaaattgttggttactttggtcagagatccactaaagga
tgtgctccagcaggctgagatggaaagcaaggaaaaggaaaggagttgga
cctgggaaagctgcaggaaacagcctccaggcagacgaaggatgccctgt
gtaagaggctcagggttgggtcaatgtgccagggtcagaaaaccagattg
gggtgggggtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92896632_92897823
seq2: B6Ng01-098N13.b_49_1218 (reverse)

seq1  GTACCTGGCGCAAGTTGGCAGAATGTGCGGAGGCTAGTTGGTCGTCTGTA  50
      ||||||||| || ||  |||||   || ||||||||||  || | |||||
seq2  GTACCTGGC-CATGT--GCAGA---TGGGGAGGCTAGT--GTTG-CTGTA  41

seq1  GAAGGCGCCACACAGGCAGGCAGGCAGTCAGGCAGGCAGGCAAAATCTTA  100
      ||  || |||| || || |||| |||||| |||| ||||   || |||| 
seq2  GA--GCCCCACCCA-GCCGGCA-GCAGTCGGGCA-GCAG--CAATTCTT-  83

seq1  TACCAGGAGCTCATTAGAGACAGGTGCA-CAGTGGGTGATTAATGGTGTT  149
      || ||||||||||||||||||||  ||| |||||||||||||||||||||
seq2  TATCAGGAGCTCATTAGAGACAGTGGCACCAGTGGGTGATTAATGGTGTT  133

seq1  GGTTACAGGACCTTTGGCTAAATACAGACCCTTGCTACATGTAGTGGTTT  199
      |  |||||   ||| | || ||||||||||||||||||  ||||||||||
seq2  G--TACAGAGACTTGGACT-AATACAGACCCTTGCTACCAGTAGTGGTTT  180

seq1  GAATATAATTTCCTGGTTACAACAGTCTCTTATGTGGCTCTGTGACTACC  249
      ||||||||||| |||| |||||||||||| ||||||||||||||||||||
seq2  GAATATAATTT-CTGG-TACAACAGTCTC-TATGTGGCTCTGTGACTACC  227

seq1  CAGCAAATAAGTGTCCCTGGGAGGGCCAGAGTGCCCCATAAATCCTGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATAAGTGTCCCTGGGAGGGCCAGAGTGCCCCATAAATCCTGGTG  277

seq1  GTTGCAGGACAAAGGAATGAGAAGATTGGGAGTCTCGTAAGCCAACCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGACAAAGGAATGAGAAGATTGGGAGTCTCGTAAGCCAACCTCT  327

seq1  TATCGGGTGGTTGGTATAAAAATAGATTGGAAGCAGAGGCCAGGGGATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGGTGGTTGGTATAAAAATAGATTGGAAGCAGAGGCCAGGGGATGG  377

seq1  TTCTGCCTTACACCCAGGGAACCGCAGTCAGCAGTTATAAAGACAGGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTACACCCAGGGAACCGCAGTCAGCAGTTATAAAGACAGGCAG  427

seq1  GAGTCAGACCTGAGCTTCCAGACAGGTCGGACCACTCAATACT-AACTGT  498
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  GAGTCAGA-CTGAGCTTCCAGACAGGTCGGACCACTCAATACTAAACTGT  476

seq1  GCTGGTCTAGGAAAGCCAGCTTCCCAGCCCCCACCCCCTCAGCCCTGGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTAGGAAAGCCAGCTTCCCAGCCCCCACCCCCTCAGCCCTGGTC  526

seq1  TCATCTCTGAAAGAGAGGCAGATTTCCTGAGGCTTAGGGGACACACAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGAAAGAGAGGCAGATTTCCTGAGGCTTAGGGGACACACAAAG  576

seq1  GAACAGCAGGCAAAGTATTTCCAACCAATGCATGAAATGAGTGCACCCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGCAAAGTATTTCCAACCAATGCATGAAATGAGTGCACCCCC  626

seq1  GAATAAGACAAACCAATGGTGAAAGTCAACCACAGATGTGGCACTTACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGACAAACCAATGGTGAAAGTCAACCACAGATGTGGCACTTACCC  676

seq1  AGAGCCAGGGGCATTCAATGAAAAGACTGGAGGGAGCAGGTGATGCTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGGGGCATTCAATGAAAAGACTGGAGGGAGCAGGTGATGCTGTC  726

seq1  TGCTCTGGTACAAATTGAATTCTGTTGGCCAACTGTGAAGCTAAATCAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGTACAAATTGAATTCTGTTGGCCAACTGTGAAGCTAAATCAGT  776

seq1  ATTCAGGTGGCAAATATCTATGCCCTGAATAATTTAATGTTCTTATGGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGGCAAATATCTATGCCCTGAATAATTTAATGTTCTTATGGAC  826

seq1  ACTAGTAAAATTGTCTCCAGCTTGGTTTCCAATTCACTCTTGAATCCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAAATTGTCTCCAGCTTGGTTTCCAATTCACTCTTGAATCCATG  876

seq1  ATCATGGTATCCAACAGTTAATCCTAAACAGCCAAGAGTTAGCAGGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTATCCAACAGTTAATCCTAAACAGCCAAGAGTTAGCAGGAAAA  926

seq1  CTAGCAAGGATTTGGATCAAAAAGGGGGTCTGGCAATGTGGGTAGAATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGGATTTGGATCAAAAAGGGGGTCTGGCAATGTGGGTAGAATTA  976

seq1  TCTTGTCACCTAGCACGGGAGAGGGCAAGCTGGGAGAATGTTTGCGGACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCACCTAGCACGGGAGAGGGCAAGCTGGGAGAATGTTTGCGGACT  1026

seq1  TGGAGGCCAGTCTGGGCTACAAAGTGAGACGCTATCTCACAAAAAAGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGTCTGGGCTACAAAGTGAGACGCTATCTCACAAAAAAGAAG  1076

seq1  AGTGGGTGGGAACCTGTAGATCAACAGTCCCTGTAGAAGATCCCATCTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGGAACCTGTAGATCAACAGTCCCTGTAGAAGATCCCATCTGA  1126

seq1  TCAGAAGGGTCATGGAAGGGTCTGAAGGTTTGGAATGAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGGTCATGGAAGGGTCTGAAGGTTTGGAATGAGAATTC  1170

seq1: chr1_92751875_92752142
seq2: B6Ng01-098N13.g_75_342

seq1  TGTGTTCAACTATTAATCAAATGTAAAGTCAGCAGGAAGATGCTGTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAACTATTAATCAAATGTAAAGTCAGCAGGAAGATGCTGTTAGG  50

seq1  GAAGCCCTCAAAAAATTGTTGGTTACTTTGGTCAGAGATCCACTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCAAAAAATTGTTGGTTACTTTGGTCAGAGATCCACTAAAGGA  100

seq1  TGTGCTCCAGCAGGCTGAGATGGAAAGCAAGGAAAAGGAAAGGAGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCAGCAGGCTGAGATGGAAAGCAAGGAAAAGGAAAGGAGTTGGA  150

seq1  CCTGGGAAAGCTGCAGGAAACAGCCTCCAGGCAGACGAAGGATGCCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAAGCTGCAGGAAACAGCCTCCAGGCAGACGAAGGATGCCCTGT  200

seq1  GTAAGAGGCTCAGGGTTGGGTCAATGTGCCAGGGTCAGAAAACCAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGCTCAGGGTTGGGTCAATGTGCCAGGGTCAGAAAACCAGATTG  250

seq1  GGGTGGGGGTGGGGGGGG  268
      ||||||||||||||||||
seq2  GGGTGGGGGTGGGGGGGG  268