BAC Information

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BAC

Clone NameB6Ng01-098O08
Chromosome1 (Build37)
Map Location 21,853,922 - 21,960,308
singlet/doubletdoublet
Overlap geneKcnq5
Upstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1, EG665725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098O08.bB6Ng01-098O08.g
ACCDH908845DH908846
length7241,108
definitionDH908845|Mus musculus domesticus DNA, BAC clone: B6Ng01-098O08, 5' end.DH908846|Mus musculus domesticus DNA, BAC clone: B6Ng01-098O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,959,585 - 21,960,308)(21,853,922 - 21,855,018)
sequence
gaattcacaaggatcggatcagccctgtcactttcttcttataagtttat
tttctcctgaacaatctgaatagtcgctcagtttgtattacaaacaaaac
caaataaatgggttaatattatttaatggaataatatggtttatttatta
tgtacttccgactaataaaattaagcagaaactatacatcattacatgga
tttttttttaagttcggtcatcaaatatggcacattttactaaataaaat
caatgtaatgcatcaaagatgtcatggatatcccagttaacagtaataca
gtgtcagttaaaagctcaggtcagttgacaaatgcatatatatatcatga
ggatcaggaacactcaagtcctagattagccaacatggtgttttctctag
aacaatcatttaactcaaatcctctgcttgttggttctccatcatcttca
gaaaaattgttttcattcctacatcttcaaatacctcctacttctttata
taattcttcgagaaaatgaaatgatgctaaactgaaaatgcctactgtgt
ctaatctttttttcttttattttcctcttctggtattcacagtggaggac
tcctcagtagttgcctagttttggtttaatttctgttccttctgctcatc
ctaactgctcttgtttttcaggctttttttcttttctggtttagtgtgtg
tgtgtgtgtgtgtgtgtgtttgtg
gaattctgatttccaagagttttttttttttttccttttttcttcattca
cctcctcatggacaaagctattaagttttgaatcccgaacctgttgtgca
gcacctgattgccttggtttaaaggaaggcaaatcactgttgtctctgat
agccagggaaggttttctttctttctttctttctctctttctttctttct
ctctttctttctttctttctttctttctttctttctttctttctttcttt
ctttttattagatattttctttatatacatttcaaatttcaaatgctatc
ctgaaagttccctataccctccccctgccctgctcccctacccacccact
cccgcttcttggccctggcattcccctgtactggggcatataaagtttgc
aataccaaggggcctctcttcccagttttcaataaaaaagaaaagaggac
ttactgaaaaatgtgtgtaatgagtatacaggagaatgaaaggcaagaag
atgcagtagatggaaagtcaccacagcccagagatgaggaagcgtaagac
tggctctgggaaaatgcaggaaccagtcaggacagtgcagaatgctgaag
agcatttgcttcctgctataacaagtcattgtgtagtgagtggattgaag
caatacaccttacatcataactctagcaaaactcttacatcatagttctg
aagcccagaagtccaaatcagtctcactgtgcaaagttaaatgtgctgta
agggccaggtcttttcaggccttcatggtttcaaagagagcatctttcct
tgctttctgcatttgaatgtcaggtgctttcccttcattcagaacacctc
tgtatcatttcaatctctttgcaacaagtctcatcccttaatctctcatc
tatgagtgcttgtgaatgtgtccactgagataatctggaataaaatataa
agcaagcattttctgcaatgtccctttgtaatgagatgcagcacatttcc
ctgattctggagaccaggatttgcaaatggaatgagccactttctgtcta
tccaccagaaaagaccatccattcacacataatcctgaaagatggcccct
ttccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21959585_21960308
seq2: B6Ng01-098O08.b_49_772 (reverse)

seq1  CACAAACACACACACACACACACACACACACTAAACCAGAAAAGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACACACACACACACACACACACACTAAACCAGAAAAGAAAAAA  50

seq1  AGCCTGAAAAACAAGAGCAGTTAGGATGAGCAGAAGGAACAGAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAAAACAAGAGCAGTTAGGATGAGCAGAAGGAACAGAAATTAAA  100

seq1  CCAAAACTAGGCAACTACTGAGGAGTCCTCCACTGTGAATACCAGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTAGGCAACTACTGAGGAGTCCTCCACTGTGAATACCAGAAGAG  150

seq1  GAAAATAAAAGAAAAAAAGATTAGACACAGTAGGCATTTTCAGTTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAAGAAAAAAAGATTAGACACAGTAGGCATTTTCAGTTTAGCA  200

seq1  TCATTTCATTTTCTCGAAGAATTATATAAAGAAGTAGGAGGTATTTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATTTTCTCGAAGAATTATATAAAGAAGTAGGAGGTATTTGAAG  250

seq1  ATGTAGGAATGAAAACAATTTTTCTGAAGATGATGGAGAACCAACAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAATGAAAACAATTTTTCTGAAGATGATGGAGAACCAACAAGCA  300

seq1  GAGGATTTGAGTTAAATGATTGTTCTAGAGAAAACACCATGTTGGCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTGAGTTAAATGATTGTTCTAGAGAAAACACCATGTTGGCTAAT  350

seq1  CTAGGACTTGAGTGTTCCTGATCCTCATGATATATATATGCATTTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTGAGTGTTCCTGATCCTCATGATATATATATGCATTTGTCAA  400

seq1  CTGACCTGAGCTTTTAACTGACACTGTATTACTGTTAACTGGGATATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGAGCTTTTAACTGACACTGTATTACTGTTAACTGGGATATCCA  450

seq1  TGACATCTTTGATGCATTACATTGATTTTATTTAGTAAAATGTGCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTTTGATGCATTACATTGATTTTATTTAGTAAAATGTGCCATAT  500

seq1  TTGATGACCGAACTTAAAAAAAAATCCATGTAATGATGTATAGTTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACCGAACTTAAAAAAAAATCCATGTAATGATGTATAGTTTCTGC  550

seq1  TTAATTTTATTAGTCGGAAGTACATAATAAATAAACCATATTATTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATTAGTCGGAAGTACATAATAAATAAACCATATTATTCCATT  600

seq1  AAATAATATTAACCCATTTATTTGGTTTTGTTTGTAATACAAACTGAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTAACCCATTTATTTGGTTTTGTTTGTAATACAAACTGAGCG  650

seq1  ACTATTCAGATTGTTCAGGAGAAAATAAACTTATAAGAAGAAAGTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCAGATTGTTCAGGAGAAAATAAACTTATAAGAAGAAAGTGACAG  700

seq1  GGCTGATCCGATCCTTGTGAATTC  724
      ||||||||||||||||||||||||
seq2  GGCTGATCCGATCCTTGTGAATTC  724

seq1: chr1_21853922_21855018
seq2: B6Ng01-098O08.g_70_1177

seq1  GAATTCTGATTTCCAAGAGTTTTTTTTTTTTTTCCTTTTTTCTTCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTCCAAGAGTTTTTTTTTTTTTTCCTTTTTTCTTCATTCA  50

seq1  CCTCCTCATGGACAAAGCTATTAAGTTTTGAATCCCGAACCTGTTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATGGACAAAGCTATTAAGTTTTGAATCCCGAACCTGTTGTGCA  100

seq1  GCACCTGATTGCCTTGGTTTAAAGGAAGGCAAATCACTGTTGTCTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGATTGCCTTGGTTTAAAGGAAGGCAAATCACTGTTGTCTCTGAT  150

seq1  AGCCAGGGAAGGTTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAAGGTTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCT  200

seq1  C----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  246
      |    |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  250

seq1  CTTTTTATTAGATATTTTCTTTATATACATTTCAAATTTCAAATGCTATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTAGATATTTTCTTTATATACATTTCAAATTTCAAATGCTATC  300

seq1  CTGAAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACCCACCCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACCCACCCACT  350

seq1  CCCGCTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGC  400

seq1  AATACCAAGGGGCCTCTCTTCCCAGTTTTCAATAAAAAAGAAAAGAGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAGGGGCCTCTCTTCCCAGTTTTCAATAAAAAAGAAAAGAGGAC  450

seq1  TTACTGAAAAATGTGTGTAATGAGTATACAGGAGAATGAAAGGCAAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAATGTGTGTAATGAGTATACAGGAGAATGAAAGGCAAGAAG  500

seq1  ATGCAGTAGATGGAAAGTCACCACAGCCCAGAGATGAGGAAGCGTAAGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAGATGGAAAGTCACCACAGCCCAGAGATGAGGAAGCGTAAGAC  550

seq1  TGGCTCTGGGAAAATGCAGGAACCAGTCAGGACAGTGCAGAATGCTGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGGGAAAATGCAGGAACCAGTCAGGACAGTGCAGAATGCTGAAG  600

seq1  AGCATTTGCTTCCTGCTATAACAAGTCATTGTGTAGTGAGTGGATTGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGCTTCCTGCTATAACAAGTCATTGTGTAGTGAGTGGATTGAAG  650

seq1  CAATACACCTTACATCATAACTCTAGCAAAACTCTTACATCATAGTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACCTTACATCATAACTCTAGCAAAACTCTTACATCATAGTTCTG  700

seq1  AAGCCCAGAAGTCCAAATCAGTCTCACTGTGCAAAGTTAAATGTGCTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAAGTCCAAATCAGTCTCACTGTGCAAAGTTAAATGTGCTGTA  750

seq1  AGGGCCAGGTCTTTTCAGGCCTTCATGGTTTCAAAGAGAGCATCTTTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGGTCTTTTCAGGCCTTCATGGTTTCAAAGAGAGCATCTTTCCT  800

seq1  TGC-TTCTGCATTTGAATGTCAGGTGCTTT-CCTTCATTCAGAACACCTC  844
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCTTTCTGCATTTGAATGTCAGGTGCTTTCCCTTCATTCAGAACACCTC  850

seq1  TGTATCATTTCAATCTCTTTGCAACAGTTCTCAT-CCTTTATCTCTCATC  893
      ||||||||||||||||||||||||||  |||||| |||| ||||||||||
seq2  TGTATCATTTCAATCTCTTTGCAACAAGTCTCATCCCTTAATCTCTCATC  900

seq1  TATGAGTGCTTGTGAATGTGTCCACTGAGATAATCTGGGATAAAATAT-A  942
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TATGAGTGCTTGTGAATGTGTCCACTGAGATAATCTGGAATAAAATATAA  950

seq1  AGCAAGCA-TCTCTGCAATGTCCCTTTGTAATGAGATGCAGCACA-TTCC  990
      |||||||| | |||||||||||||||||||||||||||||||||| ||||
seq2  AGCAAGCATTTTCTGCAATGTCCCTTTGTAATGAGATGCAGCACATTTCC  1000

seq1  CTGA-TCTGGAGGACCAGGATTTGCAAATGGAATGAGGCACTTTCTGTCT  1039
      |||| |||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CTGATTCTGGA-GACCAGGATTTGCAAATGGAATGAGCCACTTTCTGTCT  1049

seq1  AT-CACCAGAGAAGACCCATCCATTCACACCATATCCTGAAAGATGG-CC  1087
      || ||||||| |||| ||||||||||||||   |||||||||||||| ||
seq2  ATCCACCAGAAAAGA-CCATCCATTCACACATAATCCTGAAAGATGGCCC  1098

seq1  CTTTCCTTGG  1097
      ||||||||||
seq2  CTTTCCTTGG  1108