BAC Information

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BAC

Clone NameB6Ng01-099D17
Chromosome1 (Build37)
Map Location 60,367,948 - 60,505,201
singlet/doubletdoublet
Overlap geneNbeal1, Cyp20a1, Abi2
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneRaph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D17.bB6Ng01-099D17.g
ACCDH909082DH909083
length1,1761,117
definitionDH909082|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D17, 5' end.DH909083|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,504,019 - 60,505,201)(60,367,948 - 60,369,077)
sequence
gaattctttaaatatttcattaagaagaatctgggtttaacagccagcaa
aacagacagacacacacacacacacatacacactcactaagttcagtaac
aaattgaattcaaattcacaaaataaaaccaaacaaataaccactaatgc
tctacctggaaagacgcttggaggagacggagtaggcacagcaatgggta
cccccacactaccacttccgctgttctcccgactgctgctccgactactt
gggtgacttcctccactgctcccactgctgctgaaggaggaagagccacc
gaagaatgagtatgcagagcacaataccaggattcccgtgtatttctgaa
acggacatagctacaagaaacataattcaaaaaggcttccatttcaaata
ggaattccttaataaataaggagaaactcttgagttcagtaaacttgttt
tgatacctatttataaagtctaccttataaaaaaaatttaagtaaattcc
ctataaatgtaagagcaaactgttggtgcttacacatcaaaataatacta
ccttttatatcctggcctgatacccatctaaagaagcttttagtaaattt
tactaaattattttatttcagtttgtaatggcatggtaatatactaatat
tttattatgaatagtttttcatctgtaaatttccagcaaaaaataacttg
caatttctattcctggttagtaatggtttttatattaacttaagtttatc
tctgggatgtcttttttcaccttcctggctgttcaaagttgcatcagaac
atgaggagagagaggaagaatcagatgaggtttgggagagcagagtgagg
aaaagaacttagtgcttggaaatgagagagattagctgaagttatctgaa
gagatcatggtactctgaccatcgtggtttgcgctgaggtagagaaaata
cctgtaagttcgatttctttgattcacagaagctgtcctcacaggctctg
ctgcgagggagcattattacgggttgggctaggtacgtatcatttggtac
cactggaggacgcactggcctcagtgttcgataggggaagtgccgctaca
aaaaggaagagcgtatgttatgggtgggatataagttcggcacgctactc
gaggtgccagtggacatacatttgta
gaattcacttctctccagagcttgtttctttatttcttttattgtataag
agtggcacatgcacctgataggaatatttattgtattgggggtacattta
agcaccatgtaaattaaatatactttcatattacattaatagatattaaa
ccaagttttatttttaaattggattgtagatatgacaatgttcttgccac
ataataaaatttgtcattaatagataaaacattattaacagtaaagtatg
agagataaaattgttgaatatatatttacttggtgtacaccttattattt
caggtcttgatataatatgtgctgtcttccttatttattcatttatgtta
tgtgtacaagtgttttgtctgcacgtttttctgtgcaccacatgtgtatg
tagtgcctgctgaggctagaagaggtcatcagatcccctgagactggatt
tacagatagttgtgagcgtccatgtaggtgcttagaatcaaatgtaggtt
ctctggaagagactcccataaaatcttaactgctgagccatctatccaac
ccctctactgtttttcttaaggatacctttcataaaatagtagttttcat
ttagaggaggatgtgaatagggttagagagtagaaacagcaaaattacct
atgggtctgtcctgagttctctgactgcacagtgctggcagaactcagtc
agcacatcgcagatcaccccagaatgatggtctcaaccacagctctccgg
atgactggccctgtgaatgtcctgttattctcatctgatattttaaatac
atttaattattcattagagggaggcatacacgtgtgtacctggagattcg
aggactccctgtaggaatcagtctctgctgccatgtatgcccaaagggat
taagtgtagatcatcagtgttggcagcaggatccttactgaccatcctgt
cagccctagcttagtatatgtgaacattacctgaaatggccctaagtctg
tcagaacatacccattttattttatttttcttcacagattattgtgactt
gcttagcttacggatacgtggaatcacttgatttctggctccaggacctt
cttgcatgatatggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60504019_60505201
seq2: B6Ng01-099D17.b_48_1223 (reverse)

seq1  TACAAATTGTATGT-CACTGGCAACTCTGAAGTTAGCGTGCCGAGACTTG  49
      |||||| ||||||| |||||||| ||| ||   ||||||||||| |||| 
seq2  TACAAA-TGTATGTCCACTGGCACCTC-GA--GTAGCGTGCCGA-ACTT-  44

seq1  ATTAATCACA-CCAT-ACATACGCTCTT-CTTTTTGTAGGCGGCACTCCC  96
      ||  ||| || |||| |||||||||||| ||||||||| |||||||| ||
seq2  AT--ATCCCACCCATAACATACGCTCTTCCTTTTTGTA-GCGGCACTTCC  91

seq1  CCTATCGAACACTGGAGCCAGTGCGTCCTCCAGTGGTACCAAATGATTAC  146
      ||||||||||||||  |||||||||||||||||||||||||||||| |||
seq2  CCTATCGAACACTGAGGCCAGTGCGTCCTCCAGTGGTACCAAATGA-TAC  140

seq1  GTACCTAGCCCAACCCGTAATATGGCTCCCTCGCAGCAGAGCCCTGTGAG  196
      ||||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  GTACCTAGCCCAACCCGTAATAATGCTCCCTCGCAGCAGAG-CCTGTGAG  189

seq1  GACAGCTTCTGTGAATCAAAGAAATCGAACTTACAGGTATTTTCTCTACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTCTGTGAATCAAAGAAATCGAACTTACAGGTATTTTCTCTACC  239

seq1  TCAGCGCAAACCACGATGGTCAGAGTACCATGATCTCTTCAGATAACTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCAAACCACGATGGTCAGAGTACCATGATCTCTTCAGATAACTTC  289

seq1  AGCTAATCTCTCTCATTTCCAAGCACTAAGTTCTTTTCCTCACTCTGCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCTCTCTCATTTCCAAGCACTAAGTTCTTTTCCTCACTCTGCTC  339

seq1  TCCCAAACCTCATCTGATTCTTCCTCTCTCTCCTCATGTTCTGATGCAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCTCATCTGATTCTTCCTCTCTCTCCTCATGTTCTGATGCAAC  389

seq1  TTTGAACAGCCAGGAAGGTGAAAAAAGACATCCCAGAGATAAACTTAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGCCAGGAAGGTGAAAAAAGACATCCCAGAGATAAACTTAAGT  439

seq1  TAATATAAAAACCATTACTAACCAGGAATAGAAATTGCAAGTTATTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAAACCATTACTAACCAGGAATAGAAATTGCAAGTTATTTTTT  489

seq1  GCTGGAAATTTACAGATGAAAAACTATTCATAATAAAATATTAGTATATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAATTTACAGATGAAAAACTATTCATAATAAAATATTAGTATATT  539

seq1  ACCATGCCATTACAAACTGAAATAAAATAATTTAGTAAAATTTACTAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCATTACAAACTGAAATAAAATAATTTAGTAAAATTTACTAAAA  589

seq1  GCTTCTTTAGATGGGTATCAGGCCAGGATATAAAAGGTAGTATTATTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTAGATGGGTATCAGGCCAGGATATAAAAGGTAGTATTATTTTG  639

seq1  ATGTGTAAGCACCAACAGTTTGCTCTTACATTTATAGGGAATTTACTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAAGCACCAACAGTTTGCTCTTACATTTATAGGGAATTTACTTAA  689

seq1  ATTTTTTTTATAAGGTAGACTTTATAAATAGGTATCAAAACAAGTTTACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTATAAGGTAGACTTTATAAATAGGTATCAAAACAAGTTTACT  739

seq1  GAACTCAAGAGTTTCTCCTTATTTATTAAGGAATTCCTATTTGAAATGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGAGTTTCTCCTTATTTATTAAGGAATTCCTATTTGAAATGGA  789

seq1  AGCCTTTTTGAATTATGTTTCTTGTAGCTATGTCCGTTTCAGAAATACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTTGAATTATGTTTCTTGTAGCTATGTCCGTTTCAGAAATACAC  839

seq1  GGGAATCCTGGTATTGTGCTCTGCATACTCATTCTTCGGTGGCTCTTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCTGGTATTGTGCTCTGCATACTCATTCTTCGGTGGCTCTTCCT  889

seq1  CCTTCAGCAGCAGTGGGAGCAGTGGAGGAAGTCACCCAAGTAGTCGGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCAGCAGTGGGAGCAGTGGAGGAAGTCACCCAAGTAGTCGGAGC  939

seq1  AGCAGTCGGGAGAACAGCGGAAGTGGTAGTGTGGGGGTACCCATTGCTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGGGAGAACAGCGGAAGTGGTAGTGTGGGGGTACCCATTGCTGT  989

seq1  GCCTACTCCGTCTCCTCCAAGCGTCTTTCCAGGTAGAGCATTAGTGGTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCCGTCTCCTCCAAGCGTCTTTCCAGGTAGAGCATTAGTGGTTA  1039

seq1  TTTGTTTGGTTTTATTTTGTGAATTTGAATTCAATTTGTTACTGAACTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTTTATTTTGTGAATTTGAATTCAATTTGTTACTGAACTTA  1089

seq1  GTGAGTGTGTATGTGTGTGTGTGTGTGTCTGTCTGTTTTGCTGGCTGTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTATGTGTGTGTGTGTGTGTCTGTCTGTTTTGCTGGCTGTTA  1139

seq1  AACCCAGATTCTTCTTAATGAAATATTTAAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  AACCCAGATTCTTCTTAATGAAATATTTAAAGAATTC  1176

seq1: chr1_60367948_60369077
seq2: B6Ng01-099D17.g_69_1185

seq1  GAATTCACTTCTCTCCAGAGCTTGTTTCTTTATTTCTTTTATTGTATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCTCCAGAGCTTGTTTCTTTATTTCTTTTATTGTATAAG  50

seq1  AGTGGCACATGCACCTGATAGGAATATTTATTGTATTGGGGGTACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACATGCACCTGATAGGAATATTTATTGTATTGGGGGTACATTTA  100

seq1  AGCACCATGTAAATTAAATATACTTTCATATTACATTAATAGATATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATGTAAATTAAATATACTTTCATATTACATTAATAGATATTAAA  150

seq1  CCAAGTTTTATTTTTAAATTGGATTGTAGATATGACAATGTTCTTGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTATTTTTAAATTGGATTGTAGATATGACAATGTTCTTGCCAC  200

seq1  ATAATAAAATTTGTCATTAATAGATAAAACATTATTAACAGTAAAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATTTGTCATTAATAGATAAAACATTATTAACAGTAAAGTATG  250

seq1  AGAGATAAAATTGTTGAATATATATTTACTTGGTGTACACCTTATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAATTGTTGAATATATATTTACTTGGTGTACACCTTATTATTT  300

seq1  CAGGTCTTGATATAATATGTGCTGTCTTCCTTATTTATTCATTTATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGATATAATATGTGCTGTCTTCCTTATTTATTCATTTATGTTA  350

seq1  TGTGTACAAGTGTTTTGTCTGCACGTTTTTCTGTGCACCACATGTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAAGTGTTTTGTCTGCACGTTTTTCTGTGCACCACATGTGTATG  400

seq1  TAGTGCCTGCTGAGGCTAGAAGAGGTCATCAGATCCCCTGAGACTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTGCTGAGGCTAGAAGAGGTCATCAGATCCCCTGAGACTGGATT  450

seq1  TACAGATAGTTGTGAGCGTCCATGTAGGTGCTTAGAATCAAATGTAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAGTTGTGAGCGTCCATGTAGGTGCTTAGAATCAAATGTAGGTT  500

seq1  CTCTGGAAGAGACTCCCATAAAATCTTAACTGCTGAGCCATCTATCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGAGACTCCCATAAAATCTTAACTGCTGAGCCATCTATCCAAC  550

seq1  CCCTCTACTGTTTTTCTTAAGGATACCTTTCATAAAATAGTAGTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACTGTTTTTCTTAAGGATACCTTTCATAAAATAGTAGTTTTCAT  600

seq1  TTAGAGGAGGATGTGAATAGGGTTAGAGAGTAGAAACAGCAAAATTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAGGATGTGAATAGGGTTAGAGAGTAGAAACAGCAAAATTACCT  650

seq1  ATGGGTCTGTCCTGAGTTCTCTGACTGCACAGTGCTGGCAGAACTCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTGTCCTGAGTTCTCTGACTGCACAGTGCTGGCAGAACTCAGTC  700

seq1  AGCACATCGCAGATCACCCCAGAATGATGGTCTCAACCACAGCTCTCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCGCAGATCACCCCAGAATGATGGTCTCAACCACAGCTCTCCGG  750

seq1  ATGACTGGCCCTGTGAATGTCCTGTTATTCTCATCTGATATTTTAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGCCCTGTGAATGTCCTGTTATTCTCATCTGATATTTTAAATAC  800

seq1  ATTTAATTATTCATTAGAGGGAGGCATACACGTGTGTACCTGGAGATTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATTCATTAGAGGGAGGCATACACGTGTGTACCTGGAGATTCG  850

seq1  AGGACTCCCTGTAGGAATCAGGTCTCTGCTGCCATGTATGCCCAAAGGGA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGACTCCCTGTAGGAATCA-GTCTCTGCTGCCATGTATGCCCAAAGGGA  899

seq1  TTAAGTGTAGATCATCAGTGTTGGCAGCAGGATCCTTTACTGAACCATCC  950
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  TTAAGTGTAGATCATCAGTGTTGGCAGCAGGATCC-TTACTG-ACCATCC  947

seq1  TGTCAGCCCTAGCTTAGTAATATGTGAACATTACCTGAAATTGCCCTTAA  1000
      |||||||||||||||||| |||||||||||||||||||||| |||||  |
seq2  TGTCAGCCCTAGCTTAGT-ATATGTGAACATTACCTGAAATGGCCCT--A  994

seq1  AGTTCTGTCAGAACATACCCATTTTATTTTATTTTTCCTTCAAACAGA-T  1049
      || ||||||||||||||||||||||||||||||||| ||||  ||||| |
seq2  AG-TCTGTCAGAACATACCCATTTTATTTTATTTTT-CTTC--ACAGATT  1040

seq1  ATTGTGACTTGCTTAGC-TACAGATTACTGTGGAATACACTTGATTTCTG  1098
      ||||||||||||||||| ||| || ||| ||||||| |||||||||||||
seq2  ATTGTGACTTGCTTAGCTTACGGA-TAC-GTGGAAT-CACTTGATTTCTG  1087

seq1  GCTCCAGGGACACTACATGCATGATATGGCAA  1130
      |||||| |||| || | |||||||||||||||
seq2  GCTCCA-GGAC-CTTCTTGCATGATATGGCAA  1117