BAC Information

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BAC

Clone NameB6Ng01-099L21
Chromosome1 (Build37)
Map Location 84,972,273 - 85,182,763
singlet/doubletdoublet
Overlap geneLOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
Downstream geneEG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L21.bB6Ng01-099L21.g
ACCDH909452DH909453
length1,022679
definitionDH909452|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L21, 5' end.DH909453|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,181,742 - 85,182,763)(84,972,273 - 84,972,956)
sequence
gaattctgttcttacaaacagaaacacaaaataagaggcaactgcctctt
gttgctatgaaatactgcacccaagaattaaggatggtttcatcggctga
acagttctaccttgtttgagagacccagactgagatgctcttagcatgct
ggggaaggtagaggtactggcctttaaagtaattgttggacaggttatat
cgtagcttccttctagaaaatggagtaggcaaaacatcctggggattcag
aattcaagcaagctagacattaatgccaaggacaaattatacgctagcct
ggagttcagattcttagtgagctttgaagccagagttcagtgatatgtgg
cctgttgaagtctatgctaatatcatactaacttctccaacttaaagcag
tcaacattcaaggaggatgtagctctacacacaatacaagagcatggggg
aaggaagacacaggctgaaaaccagaaaagaaggcagtagaggaggaaat
gagaggtgacgttaaggataacaacccaacttaggcgccatcagtaagat
gctgtgtgtaacactcacatggtgagcactcacctcttttcttttgcgat
gtatccgtggaggattgggtagaaaatttctctgcaagataaaaggacct
gagcatgtaggtatctgtatttcagtggtatgagtcttgcatttccaacc
tccttccaaaagttctgcctggttcagacccaggttgtctgactccattt
ccctcttgttacctatggactctagcctgtgacagctagaaagatccacc
ttacatccatctttctctgctgtatcttccttaagtcctgagaatgtttt
cctacaatcactgattcaacctttaaatctacctgacccacttcagcttg
actttccaccaggactagccagtcaacagcccgtcgttgcttgcatatag
agtgtgacagactctaatgatttggagcacacaagacaaaaaacctggtt
taggaaggggggatgaggaaaa
gaattctggccatttagaagtttcagaaattcaaaccacagttagaaacc
tgaattattcttttcctctgagaaggtcaaagattatggctgggaatgtc
tgctgggtatctaagtaatgacatgtacttacactggtggagagaaatta
tttaaaaaatatttttattatttagtgtgtgattttgctgcatgcatata
tgcatcatgtgtgtgcagtaacccaggagaccaggagaggacattggatc
ccataggactgcagttatatatggttgtactgtagatgctgggaattgaa
cctgggttctctgtaagaatagccagtgctcttaatcactgaggtatctc
tcctgtaccaccagcgtatttctaagggataagaggaccatgtgatgacg
ggtctggccttgaggacattggaaaagactgagccataaggcttcctgcc
tccaagtgaggagctctctgataaaaggttggaggatactatagagggcg
ctgctgaaggagagggtggaggtggagtaagaaccatctaccagaggcaa
gcatccagagtggtgaactctgattgagttctgtaagaaagaatgagtaa
gcaccaattttcctacccaacacacaaacgtgtagctcagactttatttt
ttcaaaacttatttttaaaatgagttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85181742_85182763
seq2: B6Ng01-099L21.b_50_1071 (reverse)

seq1  TTTTCCTCATCCCCCCTTCCTAAACCAGGTTTTTTGTCTTTGTGTGCTCC  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTCCTCATCCCCCCTTCCTAAACCAGGTTTTTTGTC-TTGTGTGCTCC  49

seq1  AAATTCATCAGAGTCTGTGACACTCTATATGCAAGCAAGGACTGGCTGTT  100
      ||| |||| ||||||||| ||||||||||||||||||| ||| |||||||
seq2  AAA-TCATTAGAGTCTGTCACACTCTATATGCAAGCAACGACGGGCTGTT  98

seq1  GACTGGCTAGTCCTGGTGGAAAGTCAAGCTGAAGTGGGTCAGGTAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTAGTCCTGGTGGAAAGTCAAGCTGAAGTGGGTCAGGTAGATTT  148

seq1  AAAGGTTGAATCAGTGATTGTAGGAAAACATTCTCAGGACTTAAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGAATCAGTGATTGTAGGAAAACATTCTCAGGACTTAAGGAAGA  198

seq1  TGCAGCAGAGAAAGATGGATGTAAGGTGGGTCTTTCTAGCTGTCACAGGC  250
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACAGCAGAGAAAGATGGATGTAAGGTGGATCTTTCTAGCTGTCACAGGC  248

seq1  TAGAGTCCATAGGTAACAAGAGGGAAATGGAGTCAGACAACTTGGGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGAGTCCATAGGTAACAAGAGGGAAATGGAGTCAGACAACCTGGGTCTG  298

seq1  AACCAGGCAGAACTTTTGGAAGGAGGTTGGAAATGCA--ACTCATACCAC  348
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AACCAGGCAGAACTTTTGGAAGGAGGTTGGAAATGCAAGACTCATACCAC  348

seq1  TGAAATACGGATACCTACATGCTCAGGTCCTTTTATCTTGCAGAGAAATT  398
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACAGATACCTACATGCTCAGGTCCTTTTATCTTGCAGAGAAATT  398

seq1  TTCTACCCAATCCTCCACGGATACATCGCAAAAGAAAAGAGGTGAGTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCAATCCTCCACGGATACATCGCAAAAGAAAAGAGGTGAGTGCT  448

seq1  CACCATGTGAGTGTTACACACAGTATCTTACTGATGGCACCTAAATTGGG  498
      ||||||||||||||||||||||| |||||||||||||| ||||| |||||
seq2  CACCATGTGAGTGTTACACACAGCATCTTACTGATGGCGCCTAAGTTGGG  498

seq1  TTGTTATCCTTAATGTCACCTCTCATTTCCTCCTCTACTGCCTTCTTTTC  548
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCCTTAACGTCACCTCTCATTTCCTCCTCTACTGCCTTCTTTTC  548

seq1  TGGTTTTCAGCCTGTGTCTTCCTTCCCCCATGCTCTTGTATTGTGTGTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCAGCCTGTGTCTTCCTTCCCCCATGCTCTTGTATTGTGTGTAG  598

seq1  AGCTACATCCTCCTTGAATGTTGACTGCTTTAAGTTGGAGAAGTTAGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATCCTCCTTGAATGTTGACTGCTTTAAGTTGGAGAAGTTAGTAT  648

seq1  GCTATTAGCATAGACTTCAACAGGCCACATATCACTGAACTCTGGCTTCA  698
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGCATAGACTTCAACAGGCCACATATCACTGAACTCTGGCTTCA  698

seq1  AAGCTCACTAAGAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGC  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCTCACTAAGAATCTGAACTCCAGGCTAGCGTATAATTTGTCCTTGGC  748

seq1  ATTATTGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCTAC  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTCTAGCTTGCTTGAATTCTGAATCCCCAGGATGTTTTGCCTAC  798

seq1  TCCATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTA  848

seq1  AAGGCCAGTACCTCTACCTTCCCCAGCATGCTAAGAACATCTCAGTCTGG  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGGCCAGTACCTCTACCTTCCCCAGCATGCTAAGAGCATCTCAGTCTGG  898

seq1  GTCTCTCAAACAAGCTAGAACTGTTCAGCCGATGAAACCATCCTTAATTC  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAAACAAGGTAGAACTGTTCAGCCGATGAAACCATCCTTAATTC  948

seq1  TTGGGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCAGTATTTCATAGCAACAAGAGGCAGTTGCCTCTTATTTTGTG  998

seq1  TTTCTGTTTGTAAGAACAGAATTC  1022
      ||||||||||||||||||||||||
seq2  TTTCTGTTTGTAAGAACAGAATTC  1022

seq1: chr1_84972273_84972956
seq2: B6Ng01-099L21.g_69_747

seq1  GAATTCTGGCCATTTAGAAGTTTCAGAAATTCAAACCACAGTTAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCATTTAGAAGTTTCAGAAATTCAAACCACAGTTAGAAACC  50

seq1  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100

seq1  TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTATCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150

seq1  TTTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAA-TATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  199

seq1  ATGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGAT  249

seq1  CCCATAGGACTGCAGTTATATATGGTTGTACTGTAGATGCTGGGAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGACTGCAGTTATATATGGTTGTACTGTAGATGCTGGGAATTGA  299

seq1  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  349

seq1  CTCCTGTACCACCAGAGTATTCCTAAGGGATAAGAGGACCATGTGATGAC  400
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CTCCTGTACCACCAGCGTATTTCTAAGGGATAAGAGGACCATGTGATGAC  399

seq1  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  449

seq1  CTCCAAGTGATAAAAGGCTCTCTGATAAAAGGTTGGAGGATACTATAGAG  500
      ||||||||||  |   ||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTGAGGA---GCTCTCTGATAAAAGGTTGGAGGATACTATAGAG  496

seq1  GGCGCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGAACCATCTACCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGAACCATCTACCAGAG  546

seq1  GCAAGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATGA  600
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCCAGAGTGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATGA  596

seq1  GTAAGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTA  646

seq1  TTTTTTTAAAACCTTACTTTTAAAATGGGTTCTT  684
      |||||| |||| |||| |||||||||| ||||||
seq2  TTTTTTCAAAA-CTTATTTTTAAAATGAGTTCTT  679