BAC Information

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BAC

Clone NameB6Ng01-099L22
Chromosome1 (Build37)
Map Location 92,309,741 - 92,447,979
singlet/doubletdoublet
Overlap genenone
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L22.bB6Ng01-099L22.g
ACCDH909454DH909455
length1,1511,100
definitionDH909454|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L22, 5' end.DH909455|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,446,817 - 92,447,979)(92,309,741 - 92,310,839)
sequence
gaattcctagtcttaggcctgtgtccactgcctcgcagagtacctggagc
agttaataatagtgagtgatgcaggatgctaggtgatcaactggtgatgt
ctgtcactggcttgggcagaggacagcagcacaccacagctttttagact
ccctgtccatatttaagacctggctcaaatgctgtcttaaagccatcctt
ccagactcagcatctagctccatcagagctcagtagtgatgaggttgtcc
ctgctgttgtatattttaggcaactaatttattacccaattgtatattat
aattgacccctttcttttccttacttataagccccccgctggatgcacac
ccttctcttaaaccatcttcatgtagccacaatatccctttctcttacac
gcgttctcgcgaccggccaggaaagacgcaacaaaccggaatcttctgcg
gcaaaagctttattgcttacatcttcaggagccagagagcaagagcgcaa
gagctctattgcttacatctttaggagccagagcgcaagagagcaagagt
gcaagagctttattgcttacatcttcaggagcaagaagcaagagccagag
caagagctctattgcttacatctttaggagccagaagcaagagccagagc
aagagagagaatggcgaaaccccgtcccttttaaggagaattattctccg
cctaggacgtattactccctgattggctgcagcccattggccgagttgtc
gtcacggggaaggcagagcacatggggtggaaaactacccttggcacatg
cgcagattatttgtttaccacttagaacacaggatgtcagcgccatcttg
cacggcgaatgtgagggcggctccccacaccttttcccctctcatgtctg
agtctcccattctggctttcttctgggttactcgagcttttgctcagcaa
ggcactgggggctggagctgagacacagctgagaccggcttagctgcatt
ggcacctggctccacatggcgaaagctcactctgctgatgggccttcttt
gatttgtacatgatgcctctagcctgccgtctgactggggggaaggatgt
gccctaatgaatctgacgaactgatacctatcagctttggtcaactgaac
a
gaattccaaatatcagaaaataacagacagcataggctggagggctctta
tctagactgcttaggaccagagtgctttcaggtttttaaaaattgcatat
agataggaagacagcttagggatgggatcaggtgaaaaaacaagccattt
atatttcaatttacctgaagctacttcagtatgatatgtgtcttcgatag
agttttatttcatgaagaggcaccatgaccacagtaagtcttacaaagaa
aaacatttagttggtgctggtttgcagattcagagatttagtctgttgat
atcatggtgggaagcatggcagcatgcaggtagacaccgtgctggagagg
gagctgagagttctacatctggataggcaggcggcaggaaaagagaatga
caatgggcctggcttgagcatctgagacctccaaatccgcctcctagtga
cacacttcctccatcaaggccagacctaatagtgacactccctataagtc
tatggggtccattttcattcaaacctctctattatgtaaatctgctcctt
agctttgtcccatccccctagggtagttgcggcaatttctactcatggaa
catcatgactgtgcttaaagcatttcagggttttttgttgttattgttgc
ttagattaaggatgttcgattgaattctggatgatctgaggatcagccaa
tgactcctggttccctctgaagctgaggaagcctggtacaagtttcacac
atcacaaggaccattctcagagccaagatgtaccaagtgcttcttcctcg
gtttcctcttagttgtgggtcgtctgatgagttagatgcacggcagcctg
ttccttcttagatccctccaataagcatctctgtccaagcatgaaaattt
ctggcttggctatatggctagggaacttccagcctggagagcagagctgt
ccttgttagaacaggcttcttccagcattggtgcattacttttggaaaat
attgctttcttccctgtgaatcaaaatgaggcacagagacaaagcatcta
gtcttggtgggcaggaactcggaaaactgacccttggttgtcatatcttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92446817_92447979
seq2: B6Ng01-099L22.b_50_1200 (reverse)

seq1  TGTTCAGTTGCCCAAGGCTGATTCGTATCGGTCCGTCAGACTCCATTTGG  50
      |||||||||| |||| ||||||  ||||| || ||||||| | |||| ||
seq2  TGTTCAGTTGACCAAAGCTGATAGGTATCAGTTCGTCAGA-TTCATTAGG  49

seq1  GCCACATCCTTCCCCCCAGTTCAGAACCGGCCAAGCCTAAGGAGCATCAT  100
      | ||||||||||||||||| |||||  ||||  || || ||  |||||||
seq2  G-CACATCCTTCCCCCCAG-TCAGA--CGGC--AGGCT-AGAGGCATCAT  92

seq1  GTAACAAATCCAAAGGAAGGCCCATCAGCAGAGTTGAGCTTTCGCCATGT  150
      || |||||||  || |||||||||||||||||| ||||||||||||||||
seq2  GT-ACAAATC--AAAGAAGGCCCATCAGCAGAG-TGAGCTTTCGCCATGT  138

seq1  GGAGCCAGGTGCCCAATGCAGCTAAGCCGGTCCTCAGCTGTGTCTCAGCT  200
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GGAGCCAGGTG-CCAATGCAGCTAAGCCGGT-CTCAGCTGTGTCTCAGCT  186

seq1  CCAGCCCCCAGTGCC-TGCTGAGCAAGAGCTCGAGTAA-CCAGAAGAAAG  248
      ||||||||||||||| |||||||||| ||||||||||| |||||||||||
seq2  CCAGCCCCCAGTGCCTTGCTGAGCAAAAGCTCGAGTAACCCAGAAGAAAG  236

seq1  CCAGAATGGGAGACTCAGACATGAGAGGGG-AAAGGTGTGGGGAGCCGCC  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGAATGGGAGACTCAGACATGAGAGGGGAAAAGGTGTGGGGAGCCGCC  286

seq1  CTCACATTCGCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGT  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCACATTCGCCG-TGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGT  335

seq1  AAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTTCCACCCCATGTGCT  385

seq1  CTGCCTTCCCCGTGACGACAACTCGGCCAATGGGCTGCAGCCAATCAGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCCCGTGACGACAACTCGGCCAATGGGCTGCAGCCAATCAGGG  435

seq1  AGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAAAAGGGACGGGGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAAAAGGGACGGGGTTT  485

seq1  CGCCATTCTCTCTCTTGCTCTGGCTCTTGCTTCTGGCTCCTAAAGATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATTCTCTCTCTTGCTCTGGCTCTTGCTTCTGGCTCCTAAAGATGTA  535

seq1  AGCAATAGAGCTCTTGCTCTGGCTCTTGCTTCTTGCTCCTGAAGATGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGAGCTCTTGCTCTGGCTCTTGCTTCTTGCTCCTGAAGATGTAA  585

seq1  GCAATAAAGCTCTTGCACTCTTGCTCTCTTGCGCTCTGGCTCCTAAAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGCTCTTGCACTCTTGCTCTCTTGCGCTCTGGCTCCTAAAGAT  635

seq1  GTAAGCAATAGAGCTCTTGCGCTCTTGCTCTCTGGCTCCTGAAGATGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAATAGAGCTCTTGCGCTCTTGCTCTCTGGCTCCTGAAGATGTAA  685

seq1  GCAATAAAGCTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTCTTTCCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGCTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTCTTTCCTGG  735

seq1  CCGGTCGCGAGAACGCGTGTAAGAGAAAGGGATATTGTGGCTACATGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCGCGAGAACGCGTGTAAGAGAAAGGGATATTGTGGCTACATGAAG  785

seq1  ATGGTTTAAGAGAAGGGTGTGCATCCAGCGGGGGGCTTATAAGTAAGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAAGAGAAGGGTGTGCATCCAGCGGGGGGCTTATAAGTAAGGAA  835

seq1  AAGAAAGGGGTCAATTATAATATACAATTGGGTAATAAATTAGTTGCCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGGTCAATTATAATATACAATTGGGTAATAAATTAGTTGCCTA  885

seq1  AAATATACAACAGCAGGGACAACCTCATCACTACTGAGCTCTGATGGAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAACAGCAGGGACAACCTCATCACTACTGAGCTCTGATGGAGC  935

seq1  TAGATGCTGAGTCTGGAAGGATGGCTTTAAGACAGCATTTGAGCCAGGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTGAGTCTGGAAGGATGGCTTTAAGACAGCATTTGAGCCAGGTC  985

seq1  TTAAATATGGACAGGGAGTCTAAAAAGCTGTGGTGTGCTGCTGTCCTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGGACAGGGAGTCTAAAAAGCTGTGGTGTGCTGCTGTCCTCTG  1035

seq1  CCCAAGCCAGTGACAGACATCACCAGTTGATCACCTAGCATCCTGCATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCAGTGACAGACATCACCAGTTGATCACCTAGCATCCTGCATCA  1085

seq1  CTCACTATTATTAACTGCTCCAGGTACTCTGCGAGGCAGTGGACACAGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATTATTAACTGCTCCAGGTACTCTGCGAGGCAGTGGACACAGGC  1135

seq1  CTAAGACTAGGAATTC  1163
      ||||||||||||||||
seq2  CTAAGACTAGGAATTC  1151

seq1: chr1_92309741_92310839
seq2: B6Ng01-099L22.g_69_1168

seq1  GAATTCCAAATATCAGAAAATAACAGACAGCATAGGCTGGAGGGCTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATCAGAAAATAACAGACAGCATAGGCTGGAGGGCTCTTA  50

seq1  TCTAGACTGCTTAGGACCAGAGTGCTTTCAGGTTTTTAAAAATTGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTGCTTAGGACCAGAGTGCTTTCAGGTTTTTAAAAATTGCATAT  100

seq1  AGATAGGAAGACAGCTTAGGGATGGGATCAGGTGAAAAAACAAGCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGACAGCTTAGGGATGGGATCAGGTGAAAAAACAAGCCATTT  150

seq1  ATATTTCAATTTACCTGAAGCTACTTCAGTATGATATGTGTCTTCGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAATTTACCTGAAGCTACTTCAGTATGATATGTGTCTTCGATAG  200

seq1  AGTTTTATTTCATGAAGAGGCACCATGACCACAGTAAGTCTTACAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTCATGAAGAGGCACCATGACCACAGTAAGTCTTACAAAGAA  250

seq1  AAACATTTAGTTGGTGCTGGTTTGCAGATTCAGAGATTTAGTCTGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAGTTGGTGCTGGTTTGCAGATTCAGAGATTTAGTCTGTTGAT  300

seq1  ATCATGGTGGGAAGCATGGCAGCATGCAGGTAGACACCGTGCTGGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGGGAAGCATGGCAGCATGCAGGTAGACACCGTGCTGGAGAGG  350

seq1  GAGCTGAGAGTTCTACATCTGGATAGGCAGGCGGCAGGAAAAGAGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGTTCTACATCTGGATAGGCAGGCGGCAGGAAAAGAGAATGA  400

seq1  CAATGGGCCTGGCTTGAGCATCTGAGACCTCCAAATCCGCCTCCTAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCCTGGCTTGAGCATCTGAGACCTCCAAATCCGCCTCCTAGTGA  450

seq1  CACACTTCCTCCATCAAGGCCAGACCTAATAGTGACACTCCCTATAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCTCCATCAAGGCCAGACCTAATAGTGACACTCCCTATAAGTC  500

seq1  TATGGGGTCCATTTTCATTCAAACCTCTCTATTATGTAAATCTGCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGTCCATTTTCATTCAAACCTCTCTATTATGTAAATCTGCTCCTT  550

seq1  AGCTTTGTCCCATCCCCCTAGGGTAGTTGCGGCAATTTCTACTCATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCCCATCCCCCTAGGGTAGTTGCGGCAATTTCTACTCATGGAA  600

seq1  CATCATGACTGTGCTTAAAGCATTTCAGGGTTTTTTGTTGTTATTGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACTGTGCTTAAAGCATTTCAGGGTTTTTTGTTGTTATTGTTGC  650

seq1  TTAGATTAAGGATGTTCGATTGAATTCTGGATGATCTGAGGATCAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAAGGATGTTCGATTGAATTCTGGATGATCTGAGGATCAGCCAA  700

seq1  TGACTCCTGGTTCCCTCTGAAGCTGAGGAAGCCTGGTACAAGTTTCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGGTTCCCTCTGAAGCTGAGGAAGCCTGGTACAAGTTTCACAC  750

seq1  ATCACAAGGACCATTCTCAGAGCCAAGATGTACCAAGTGCTTCTTCCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGACCATTCTCAGAGCCAAGATGTACCAAGTGCTTCTTCCTCG  800

seq1  GTTTCCTCTTAGTTGTGGGTCGTCTGATGAGTTAGATGCACGGCAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCTTAGTTGTGGGTCGTCTGATGAGTTAGATGCACGGCAGCCTG  850

seq1  TTCCTTCTTAGAT-CCTCCAATAAGCATCTCTGTCCAAGCATGAAAA-TT  898
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TTCCTTCTTAGATCCCTCCAATAAGCATCTCTGTCCAAGCATGAAAATTT  900

seq1  CTGGCTTGGCTATATGGCTAGGGAAC-TCCAGCCTGGGAAGAGCAGGAGC  947
      |||||||||||||||||||||||||| ||||||||||  |||||| ||||
seq2  CTGGCTTGGCTATATGGCTAGGGAACTTCCAGCCTGG--AGAGCA-GAGC  947

seq1  TGTCC-TGTTAGAACAGGCTTCTTCCAGCATTGGTTGCA-TACTTTT-GA  994
      ||||| |||||||||||||||||||||||||||| |||| ||||||| ||
seq2  TGTCCTTGTTAGAACAGGCTTCTTCCAGCATTGG-TGCATTACTTTTGGA  996

seq1  AAATATTGC-TTCTTCCCTGTGAATCAAAATGAGGCACAGAGACCAAAGC  1043
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AAATATTGCTTTCTTCCCTGTGAATCAAAATGAGGCACAGAGA-CAAAGC  1045

seq1  AACCCAGCTT-GTGGGCAGGAACTCAGAAAAACTGACCCTTGGTTGTCAT  1092
      | |    ||| |||||||||||||| | ||||||||||||||||||||| 
seq2  ATCTAGTCTTGGTGGGCAGGAACTC-GGAAAACTGACCCTTGGTTGTCA-  1093

seq1  TATCTTT  1099
      |||||||
seq2  TATCTTT  1100