BAC Information

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BAC

Clone NameB6Ng01-099O08
Chromosome1 (Build37)
Map Location 91,808,861 - 91,877,306
singlet/doubletdoublet
Overlap geneGbx2, Asb18
Upstream geneLOC208347, Sh3bp4, LOC383542, EG665688, Centg2
Downstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O08.bB6Ng01-099O08.g
ACCDH909562DH909563
length1,255696
definitionDH909562|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O08, 5' end.DH909563|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,876,066 - 91,877,306)(91,808,861 - 91,809,555)
sequence
gaattctgagccaacaacttggtctctctcctttcccactctctcacatt
cttctctcttctttcttcccctccactctgcctctccttcttcttctacc
tgcacattagacacaacacagacccactctcttataacctgcctttcttc
aagaagaaatccggcatcctcttgtccatagttaggaatttctatcactc
actttaagcagttgataagatgcacttgacaaatttagaaatgtgttaac
aagtatgacttcatatgtcttcataaatccttccaccactgtgacaaaca
tctgacataaacaactcaggggaggaaagattcatttggtctcatagtgc
caaaggcttttggttcacagtcgtttgggtctgaggtaaggcatagcaac
ctcatggcaacaggagcatggtggataaggctactcaacccattagaggc
aggatggattgctcttggttccacacacaccctcattttatgtccacact
tactggatggttctacttacattcaggctttcccattggctgtataattg
ctgtcgttatttatggtgattgaaacactactatttcttcattcccattt
aattgggaggggggctgtttcctcccttactctatacatttgttggtcat
ctgtgacttcttggttgcgggaataatttttgtcgagaacaaaactccca
agtatagcatgttctagtggaaactataacctgttcaataatattttcac
atgtagtgtttactatatcccatatctccaagggcacatctatattattt
acttgtatcttattaagaattaaagttaaagaacacaaatgcagcatggt
atcctagattggatcctgacgcagaacacggatatgaaatgggagagcca
aattcagtcatcacatgggattatggaatgggagagccaaatttcagtca
tccactttcattactgttagtcttgtcagagagtaccaatgttagttcct
tatgggtgatatggtgttccataataacacaagaacctttacttgaagct
gggataaggaattctgttgagctcttttggccctgtctccacaacctctt
cttatgaatatgaatgtttgttaaaaagtttatcttatttatatgccttc
aagatccataactagggcttactaagaactagatatgcagactactcgaa
acaaactaccgggtacctgaacgggtccttataataagacgaacaaattt
gcaat
gaattcagtgctgctccagtattggccagagaagctcgcgtgtgcagagt
cagtgcagaggcttagaactggtccaagggctggtaatatggctccgttg
cacactaaaccctaagtggagcatctatgtctccccctccaaggaacttt
gtgggagagagaaggttggaagatctaagggctggagaacgaggagctgt
gtgatattctagactacgcatgaactcacagcagctgtggctactgctca
ggatggggcctggcagcactccatgatgaatgggggcccaggctactctc
ttaggagatgctggcagttaatagttattgggggagggggagtcgttttc
ccgcagtagtgtagccagtgatagtcgctgtgctgtagtaaaccatccac
ccccagctcatgcaagctgccataaccacaaaacagccaaacagatataa
agtctcagtaggagggagactttttgaaaaggaagagttcatcaggaagg
ggagaggaatgaggcagggcagcgaggagcaaacgcgaccccagtgtaca
gaactgccaaggaattttaaaataatttaaaaacaaaccattgatcgcct
ggctatagttctctgcaatgggaaaatgtgccgagtatgaatttttaatt
tatcttaactccctgcgtcctcctttctctaaatgctgaaattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91876066_91877306
seq2: B6Ng01-099O08.b_46_1300 (reverse)

seq1  AATGCAAA-TTGTT-GGCTTATTATAAGGGACCCTGTCAGGGCTCACAGT  48
      | |||||| ||||| | |||||||||| ||||||  ||| ||  | | ||
seq2  ATTGCAAATTTGTTCGTCTTATTATAA-GGACCCGTTCA-GGTACCCGGT  48

seq1  AGTTTTTGCTCTGAGTAAGTCCTGCAT-TCTAGTTCTTAGTAAAAGGCAC  97
      ||  |||| |  |||| ||| |||||| |||||||||||||||   || |
seq2  AG--TTTGTTTCGAGT-AGT-CTGCATATCTAGTTCTTAGTAA---GCCC  91

seq1  TAGTTATGAA---TGAA-GCATAAAAGAAACTT---TTTTTTAACAACAA  140
      |||||||| |   |||| ||||| ||  ||  |    |||||||||| | 
seq2  TAGTTATGGATCTTGAAGGCATATAAATAAGATAAACTTTTTAACAA-AC  140

seq1  TTTCATATTCAT-AGAAGA-GTTGTGGAGACAGGGC--AAAGAGCTC-AC  185
       ||||||||||| |||||| ||||||||||||||||  ||||||||| ||
seq2  ATTCATATTCATAAGAAGAGGTTGTGGAGACAGGGCCAAAAGAGCTCAAC  190

seq1  AGAATCCCTTAT-CCAGCTTCAAGTTAAGG-TCTTGTGTTATTATGGAAC  233
      ||||| |||||| |||||||||||| |||| |||||||||||||||||||
seq2  AGAATTCCTTATCCCAGCTTCAAGTAAAGGTTCTTGTGTTATTATGGAAC  240

seq1  A-CATATCACCATTAGGAAACTAACATTGGTACTCTCTGAC-AGACTAAC  281
      | |||||||||  || | ||||||||||||||||||||||| ||||||||
seq2  ACCATATCACCCATAAGGAACTAACATTGGTACTCTCTGACAAGACTAAC  290

seq1  AGTAATGAAAGT-GATGACTG-AATTTGGCTCTCCCATTCCATA--TCCA  327
      |||||||||||| |||||||| ||||||||||||||||||||||   |||
seq2  AGTAATGAAAGTGGATGACTGAAATTTGGCTCTCCCATTCCATAATCCCA  340

seq1  TGTGATGACTGAATTTGGCTCTCCCATTTCATATCCGTGTTCTGCGTCAG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGACTGAATTTGGCTCTCCCATTTCATATCCGTGTTCTGCGTCAG  390

seq1  GATCCAATCTAGGATACCATGCTGCATTTGTGTTCTTTAACTTTAATTCT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAATCTAGGATACCATGCTGCATTTGTGTTCTTTAACTTTAATTCT  440

seq1  TAATAAGATACAAGTAAATAATATAGATGTGCCCTTGGAGATATGGGATA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATACAAGTAAATAATATAGATGTGCCCTTGGAGATATGGGATA  490

seq1  TAGTAAACACTACATGTG-AAATATTATTGAACAGGTTATAGTTTCCACT  526
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGTAAACACTACATGTGAAAATATTATTGAACAGGTTATAGTTTCCACT  540

seq1  AGAACATGCTATACTTGGGAGTTTTGTTCTCGACAAAAATTATTCCCGCA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGCTATACTTGGGAGTTTTGTTCTCGACAAAAATTATTCCCGCA  590

seq1  ACCAAGAAGTCACAGATGACCAACAAATGTATAGAGTAAGGGAGGAAACA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAGTCACAGATGACCAACAAATGTATAGAGTAAGGGAGGAAACA  640

seq1  GCCCCCCTCCCAATTAAATGGGAATGAAGAAATAGTAGTGTTTCAATCAC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCTCCCAATTAAATGGGAATGAAGAAATAGTAGTGTTTCAATCAC  690

seq1  CATAAATAACGACAGCAATTATACAGCCAATGGGAAAGCCTGAATGTAAG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAACGACAGCAATTATACAGCCAATGGGAAAGCCTGAATGTAAG  740

seq1  TAGAACCATCCAGTAAGTGTGGACATAAAATGAGGGTGTGTGTGGAACCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCATCCAGTAAGTGTGGACATAAAATGAGGGTGTGTGTGGAACCA  790

seq1  AGAGCAATCCATCCTGCCTCTAATGGGTTGAGTAGCCTTATCCACCATGC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATCCATCCTGCCTCTAATGGGTTGAGTAGCCTTATCCACCATGC  840

seq1  TCCTGTTGCCATGAGGTTGCTATGCCTTACCTCAGACCCAAACGACTGTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGCCATGAGGTTGCTATGCCTTACCTCAGACCCAAACGACTGTG  890

seq1  AACCAAAAGCCTTTGGCACTATGAGACCAAATGAATCTTTCCTCCCCTGA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAGCCTTTGGCACTATGAGACCAAATGAATCTTTCCTCCCCTGA  940

seq1  GTTGTTTATGTCAGATGTTTGTCACAGTGGTGGAAGGATTTATGAAGACA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTATGTCAGATGTTTGTCACAGTGGTGGAAGGATTTATGAAGACA  990

seq1  TATGAAGTCATACTTGTTAACACATTTCTAAATTTGTCAAGTGCATCTTA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTCATACTTGTTAACACATTTCTAAATTTGTCAAGTGCATCTTA  1040

seq1  TCAACTGCTTAAAGTGAGTGATAGAAATTCCTAACTATGGACAAGAGGAT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCTTAAAGTGAGTGATAGAAATTCCTAACTATGGACAAGAGGAT  1090

seq1  GCCGGATTTCTTCTTGAAGAAAGGCAGGTTATAAGAGAGTGGGTCTGTGT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGATTTCTTCTTGAAGAAAGGCAGGTTATAAGAGAGTGGGTCTGTGT  1140

seq1  TGTGTCTAATGTGCAGGTAGAAGAAGAAGGAGAGGCAGAGTGGAGGGGAA  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAATGTGCAGGTAGAAGAAGAAGGAGAGGCAGAGTGGAGGGGAA  1190

seq1  GAAAGAAGAGAGAAGAATGTGAGAGAGTGGGAAAGGAGAGAGACCAAGTT  1226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGAGAAGAATGTGAGAGAGTGGGAAAGGAGAGAGACCAAGTT  1240

seq1  GTTGGCTCAGAATTC  1241
      |||||||||||||||
seq2  GTTGGCTCAGAATTC  1255

seq1: chr1_91808861_91809555
seq2: B6Ng01-099O08.g_72_767

seq1  GAATTCAGTGCTGCTCCAGTATTGGCCAGAGAAGCTCGCGTGTGCAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTGCTCCAGTATTGGCCAGAGAAGCTCGCGTGTGCAGAGT  50

seq1  CAGTGCAGAGGCTTAGAACTGGTCCAAGGGCTGGTAATATGGCTCCGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAGGCTTAGAACTGGTCCAAGGGCTGGTAATATGGCTCCGTTG  100

seq1  CACACTAAACCCTAAGTGGAGCATCTATGTCTCCCCCTCCAAGGAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAACCCTAAGTGGAGCATCTATGTCTCCCCCTCCAAGGAACTTT  150

seq1  GTGGGAGAGAGAAGGTTGGAAGATCTAAGGGCTGGAGAACGAGGAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAGAGAAGGTTGGAAGATCTAAGGGCTGGAGAACGAGGAGCTGT  200

seq1  GTGATATTCTAGACTACGCATGAACTCACAGCAGCTGTGGCTACTGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTCTAGACTACGCATGAACTCACAGCAGCTGTGGCTACTGCTCA  250

seq1  GGATGGGGCCTGGCAGCACTCCATGATGAATGGGGGCCCAGGCTACTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCCTGGCAGCACTCCATGATGAATGGGGGCCCAGGCTACTCTC  300

seq1  TTAGGAGATGCTGGCAGTTAATAGTTATTGGGGGAGGGGGAGTCGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGATGCTGGCAGTTAATAGTTATTGGGGGAGGGGGAGTCGTTTTC  350

seq1  CCGCAGTAGTGTAGCCAGTGATAGTCGCTGTGCTGTAGTAAACCATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGTAGTGTAGCCAGTGATAGTCGCTGTGCTGTAGTAAACCATCCAC  400

seq1  CCCCAGCTCATGCAAGCTGCCATAACCACAAAACAGCCAAACAGATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCATGCAAGCTGCCATAACCACAAAACAGCCAAACAGATATAA  450

seq1  AGTCTCAGTAGGAGGGAGACTTTTTGAAAAGGAAGAGTTCATCAGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGTAGGAGGGAGACTTTTTGAAAAGGAAGAGTTCATCAGGAAGG  500

seq1  GGAGAGGAATGAGGCAGGGCAGCGAGGAGCAAACGCGACCCCAGTGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAATGAGGCAGGGCAGCGAGGAGCAAACGCGACCCCAGTGTACA  550

seq1  GAACTGCCAAGGAATTTTAAAATAATTTAAAAACAAACCATTGATCGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCAAGGAATTTTAAAATAATTTAAAAACAAACCATTGATCGCCT  600

seq1  GGCTATAGTTCTCTGCAAT-GGAAAATGTGCCGAGTATGAATTTTTAATT  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTATAGTTCTCTGCAATGGGAAAATGTGCCGAGTATGAATTTTTAATT  650

seq1  TATCTTAACTCCCTGCGTCCTCCTTTCTCTAAATGCTGAAATTGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAACTCCCTGCGTCCTCCTTTCTCTAAATGCTGAAATTGTT  696