BAC Information

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BAC

Clone NameB6Ng01-100D23
Chromosome18 (Build37)1 (Build37)
Map Location 45,555,069 - 45,555,61183,678,327 - 83,679,388
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D23.bB6Ng01-100D23.g
ACCDH909802DH909803
length1,0541,069
definitionDH909802|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D23, 5' end.DH909803|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,555,069 - 45,555,611)(83,678,327 - 83,679,388)
sequence
gaattctttgttcagttctgtgccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatatttatatattt
gtgactattgagaagggtgttgtttccctaatttctttctcagcctgttt
aatccttgtgtagagaaaggccattgactgtttgagtcaatttatatccc
agct
gaattctcatgaaagggtcatttcagttatttgcatgggtttttgctaaa
cttatcccaaggatattggtcttatccactcaagacatctttgactgctg
gggagagagtgagttttattcagggatgtgggctacacaagctccagtaa
atggtgccatacccgcacatatgtaggaaacattaaatgaacttggtaag
tactgagatgtgggtccaggagatcacatgaagcttggaggaaaactcga
agtgggggcataaaggaagaattggaaagaagaaaggggggttggaattg
atctaaacatattatattcaatcacaagtattaaataaatattaaagaaa
aattaaagtgtgataaaacagggtataaaagggatgtattttttaaaaca
atatgatattcaattagcatatccccgaagacttcctactccaatcagta
tctgggatttttctcacagatttggacagagaagcaaatgttcttgtagg
gtagttttgtagcaagatgctttccttaatgggtgccaatcacagaagga
aacagttaaatgatctgaaagtgaaaacataaaagtatccagcaaaataa
ttgtttctgtattaatttatcagttactggccatgttactagttcctgct
gttcttaacttactgtctttacctatttgtttgcattttgtatgtgtgca
ttactcatatgtatctgttgcaggtgtgaatgcctgcgtgcacatacaga
ggctagaggaagatatagagtgccttcttccatcagtctccctcattcct
tttagactaggtctctcactgaatttgaactagattggcagctttcaaga
ctcagagtcatatttttggttgtgagcctagcctttaacggctgagtcat
ctctccagcccaagaaagtaatcaaggagctaaagggatctgcaacccta
taggtggaacaaccatatgaactactctagtacccctcagagctcgtgtc
tctagctgcatatgtatcagaaggatggcttattcaggccactataagga
aaagagaggcctaattggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45555069_45555611
seq2: B6Ng01-100D23.b_561_1100 (reverse)

seq1  AGCT-GGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACA  49
      |||| |||||| ||||| |||||||| |||||||||||||||||||||||
seq2  AGCTGGGATAT-AAATTGACTCAAAC-AGTCAATGGCCTTTCTCTACACA  48

seq1  AAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT  99
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT  98

seq1  AGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGA  149
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  AGTCACAAAT-ATAT-AAATATCTCGGCGTGACTCTAACTAAGGAAGTGA  146

seq1  AAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAA  196

seq1  GATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  246

seq1  CATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGGTTCAATGCAA  299
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAA  296

seq1  TCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATT  346

seq1  TGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCT  396

seq1  CAAGGATAAAAGAATCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTT  449
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAGCTTT  446

seq1  ACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGA  496

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCC  543
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCC  540

seq1: chr1_83678327_83679388
seq2: B6Ng01-100D23.g_69_1137 (reverse)

seq1  ACCAA-TGGGCCTCTCTTT--CCTCTGATGGCC-GACTAGGCCAT-CTTC  45
      ||||| | |||||||||||  | | |  ||||| || || ||||| ||||
seq2  ACCAATTAGGCCTCTCTTTTCCTTATAGTGGCCTGAATAAGCCATCCTTC  50

seq1  TGATACATATGCAGCTAGAGACACGAGCTCTG-GGGGTACTAG-GTAGTT  93
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TGATACATATGCAGCTAGAGACACGAGCTCTGAGGGGTACTAGAGTAGTT  100

seq1  CATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGATT  143
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGATT  150

seq1  ACTTTCTTGGGCTGGAGAGATGACTCAGCCGTTAAAGGCTAGGCTCACAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGGGCTGGAGAGATGACTCAGCCGTTAAAGGCTAGGCTCACAA  200

seq1  CCAAAAATATGACTCTGAGTCTTGAAAGCTGCCAATCTAGTTCAAATTCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATATGACTCTGAGTCTTGAAAGCTGCCAATCTAGTTCAAATTCA  250

seq1  GTGAGAGACCTAGTCTAAAAGGAATGAGGGAGACTGATGGAAGAAGGCAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGACCTAGTCTAAAAGGAATGAGGGAGACTGATGGAAGAAGGCAC  300

seq1  TCTATATCTTCCTCTAGCCTCTGTATGTGCACGCAGGCATTCACACCTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCTTCCTCTAGCCTCTGTATGTGCACGCAGGCATTCACACCTGC  350

seq1  AACAGATACATATGAGTAATGCACACATACAAAATGCAAACAAATAGGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATACATATGAGTAATGCACACATACAAAATGCAAACAAATAGGTA  400

seq1  AAGACAGTAAGTTAAGAACAGCAGGAACTAGTAACATGGCCAGTAACTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTAAGTTAAGAACAGCAGGAACTAGTAACATGGCCAGTAACTGA  450

seq1  TAAATTAATACAGAAACAATTATTTTGCTGGATACTTTTATGTTTTCACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATACAGAAACAATTATTTTGCTGGATACTTTTATGTTTTCACT  500

seq1  TTCAGATCATTTAACTGTTTCCTTCTGTGATTGGCACCCATTAAGGAAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCATTTAACTGTTTCCTTCTGTGATTGGCACCCATTAAGGAAAG  550

seq1  CATCTTGCTACAAAACTACCCTACAAGAACATTTGCTTCTCTGTCCAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCTACAAAACTACCCTACAAGAACATTTGCTTCTCTGTCCAAAT  600

seq1  CTGTGAGAAAAATCCCAGATACTGATTGGAGTAGGAAGTCTTCGGGGATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAAAAATCCCAGATACTGATTGGAGTAGGAAGTCTTCGGGGATA  650

seq1  TGCTAATTGAATATCATATTGTTTTAAAAAATACATCCCTTTTATACCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTGAATATCATATTGTTTTAAAAAATACATCCCTTTTATACCCT  700

seq1  GTTTTATCACACTTTAATTTTTCTTTAATATTTATTTAATACTTGTGATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCACACTTTAATTTTTCTTTAATATTTATTTAATACTTGTGATT  750

seq1  GAATATAATATGTTTAGATCAATTCCAACCCCCCTTTCTTCTTTCCAATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATATGTTTAGATCAATTCCAACCCCCCTTTCTTCTTTCCAATT  800

seq1  CTTCCTTTATGCCCCCACTTCGAGTTTTCCTCCAAGCTTCATGTGATCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTATGCCCCCACTTCGAGTTTTCCTCCAAGCTTCATGTGATCTC  850

seq1  CTGGACCCACATCTCAGTACTTACCAAGTTCATTTAATGTTTCCTACATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCACATCTCAGTACTTACCAAGTTCATTTAATGTTTCCTACATA  900

seq1  TGTGCGGGTATGGCACCATTTACTGGAGCTTGTGTAGCCCACATCCCTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGGTATGGCACCATTTACTGGAGCTTGTGTAGCCCACATCCCTGA  950

seq1  ATAAAACTCACTCTCTCCCCAGCAGTCAAAGATGTCTTGAGTGGATAAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCACTCTCTCCCCAGCAGTCAAAGATGTCTTGAGTGGATAAGA  1000

seq1  CCAATATCCTTGGGATAAGTTTAGCAAAAACCCATGCAAATAACTGAAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCCTTGGGATAAGTTTAGCAAAAACCCATGCAAATAACTGAAAT  1050

seq1  GACCCTTTCATGAGAATTC  1062
      |||||||||||||||||||
seq2  GACCCTTTCATGAGAATTC  1069