BAC Information

Click to search

BAC

Clone NameB6Ng01-100E21
Chromosome1 (Build37)14 (Build37)
Map Location 92,447,974 - 92,448,76365,264,116 - 65,264,602
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100E21.bB6Ng01-100E21.g
ACCDH909840DH909841
length795133
definitionDH909840|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E21, 5' end.DH909841|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,447,974 - 92,448,763)(65,264,116 - 65,264,602)
sequence
gaattctctgtagcttgcttgctcttgggactcaagcagacctaactgtg
atttcaatgctgttagactctcctgttctgtcctggttcgcagccgtaca
cttgcattttgccaaaagtcctcttttgaagcctaacatattcttatttg
tcaaagtttttctattacccaagcgacaggaggttctcaaaggggtgaca
caagagagtgtaccacacatggaataaataacacacttctaaggacggcc
tgaacttcacaggcatctgagtcgctgtaggcagcagtcttgagattgct
gtccctttgtgtgatgtcctgttataagcttcagggcggaggaggtgtgg
ggaagggaggtctgctcgttcatggtgggtttgctcccctacaatgccct
gcagtggcctcctcggcttgtgcctgtgcctttgtgcccaaatacttctg
agagtttcaaagctgcaaaacttagcaatcttttccactgggccagcagt
gtgcaggatagagcttcaggttccctctgacatctggattttctaactaa
aggctcttgtaagaaaatgacaagcaccaggtaatctgcactgtgtgctt
tgcctgcatcacctcagttaagcatcgtagaaacccatttgcacatattt
taatttagtttgcatattgatttttcttatttgatatgtatggatatttg
actgtgtgtactccgtgtgctgctgggtgtgcctgtggcggctggggaga
aggcgttagatcccctggaactgggagtttagagatgtttgtgaa
aagtcccagcaaccacgtgtggctcacaaccatctgtaatgggatccgat
gccctcttctggtgtgtctgaagacattgacagtgtgctcatatacataa
attaaataaataaatcttttttaaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92447974_92448763
seq2: B6Ng01-100E21.b_47_841

seq1  GAATTCTCTGTAGCTTGCTTGCTCTTGGGACTCAAGCAGACCTAACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAGCTTGCTTGCTCTTGGGACTCAAGCAGACCTAACTGTG  50

seq1  ATTTCAATGCTGTTAGACTCTCCTGTTCTGTCCTGGTTCGCAGCCGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATGCTGTTAGACTCTCCTGTTCTGTCCTGGTTCGCAGCCGTACA  100

seq1  CTTGCATTTTGCCAAAAGTCCTCTTTTGAAGCCTAACATATTCTTATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTTTGCCAAAAGTCCTCTTTTGAAGCCTAACATATTCTTATTTG  150

seq1  TCAAAGTTTTTCTATTACCCAAGCGACAGGAGGTTCTCAAAGGGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTTTCTATTACCCAAGCGACAGGAGGTTCTCAAAGGGGTGACA  200

seq1  CAAGAGAGTGTACCACACATGGAATAAATAACACACTTCTAAGGACGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGTGTACCACACATGGAATAAATAACACACTTCTAAGGACGGCC  250

seq1  TGAACTTCACAGGCATCTGAGTCGCTGTAGGCAGCAGTCTTGAGATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCACAGGCATCTGAGTCGCTGTAGGCAGCAGTCTTGAGATTGCT  300

seq1  GTCCCTTTGTGTGATGTCCTGTTATAAGCTTCAGGGCGGAGGAGGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTGTGTGATGTCCTGTTATAAGCTTCAGGGCGGAGGAGGTGTGG  350

seq1  GGAAGGGAGGTCTGCTCGTTCATGGTGGGTTTGCTCCCCTACAATGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGGTCTGCTCGTTCATGGTGGGTTTGCTCCCCTACAATGCCCT  400

seq1  GCAGTGGCCTCCTCGGCTTGTGCCTGTGCCTTTGTGCCCAAATACTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCCTCCTCGGCTTGTGCCTGTGCCTTTGTGCCCAAATACTTCTG  450

seq1  AGAGTTTCAAAGCTGCAAAACTTAGCAATCTTTTCCACTGGGCCAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCAAAGCTGCAAAACTTAGCAATCTTTTCCACTGGGCCAGCAGT  500

seq1  GTGCAGGATAGAGCTTCAGGTTCCCTCTGACATCTGGATTTTCTAACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGATAGAGCTTCAGGTTCCCTCTGACATCTGGATTTTCTAACTAA  550

seq1  AGGCTCTTGTAAGAAAATGACAAGCACCAGGTAATCTGCACTGTGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTGTAAGAAAATGACAAGCACCAGGTAATCTGCACTGTGTGCTT  600

seq1  TGCCTGCATCACCTCAGTTAAGCATCGTAGAAACCCATTTGCACATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCATCACCTCAGTTAAGCATCGTAGAAACCCATTTGCACATATTT  650

seq1  TAATTTAGTTTGCATATTGA-TTTTCTTATTTGATATGTATGGATATTTG  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATTTAGTTTGCATATTGATTTTTCTTATTTGATATGTATGGATATTTG  700

seq1  ACTGTGTGTACTCCGTGTGCTGCT-GGTGTGCCTGTGGCGGCT-GGGAGA  747
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ACTGTGTGTACTCCGTGTGCTGCTGGGTGTGCCTGTGGCGGCTGGGGAGA  750

seq1  GGGCGTTAGATCCCCTGGAACT-GGAG-TTAGAGATGTTTGTGAA  790
       ||||||||||||||||||||| |||| |||||||||||||||||
seq2  AGGCGTTAGATCCCCTGGAACTGGGAGTTTAGAGATGTTTGTGAA  795

seq1: chr14_65264116_65264602
seq2: B6Ng01-100E21.g_78_207 (reverse)

seq1  TTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATTCAGGAACCCCAGAAGAGGGTGTCAGATCTCATTACAGATGGTTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCCACCATGTGGTGGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAGGGCTCTTAACCACTGAGCCATCTCTCCAGCCCGTTTTTTCTTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAGATTTATTTTAAGCCGGGCGTGGTGGCGCACACCTTTGATCCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCACTCGGGAGGATTTCTGAGTTTGAGACCAGCCTGGTCTACAGAGTGAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAAAAAAAAAAAAAA-----------AAAAAAGATTTATT--TTTA  387
                                    ||||||||||||||  ||||
seq2  -------------------TTTTTTTTTTTAAAAAAGATTTATTTATTTA  31

seq1  TTTTATGTATGTGAGTACGCTGTATCTGTCTTCAGACACACCAGAAGAGG  437
       ||||||||| |||| || ||||   ||||||||||||||||||||||||
seq2  ATTTATGTATATGAGCACACTGTCAATGTCTTCAGACACACCAGAAGAGG  81

seq1  GCATCAGATCCCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  487
      ||||| |||||||||| |||||||||||||||| || |||||||||||||
seq2  GCATCGGATCCCATTACAGATGGTTGTGAGCCA-CACGTGGTTGCTGGGA  130