BAC Information

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BAC

Clone NameB6Ng01-100N01
Chromosome1 (Build37)
Map Location 166,545,206 - 166,685,925
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N01.bB6Ng01-100N01.g
ACCDH910197DH910198
length6661,093
definitionDH910197|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N01, 5' end.DH910198|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,685,260 - 166,685,925)(166,545,206 - 166,546,307)
sequence
gaattcctataatcatttgatgaattgtgctggtgacttgctctgcaggc
tttgaacatgtggtacccattggggtacagtggcgggggggggggggcct
aactcaccctcttccccatgaaagcaatcttctagtaaaacattgtaagg
gcaaatgtgtgtattgattgctggctaaatagagaaatgatgcagcgatg
gataatttgcttcgctgaatgaagagaaaatcggctccaccccatactaa
atactctccgttccatgtcctaatgtatgcctgcatgtgtaaagcatgtt
aggggttgtaaagatggataaaacagctcgaccttcacagcatttctcaa
aaggaatcaggagccatatccacacacaagaaaggcaatctgggatgagg
gctatttgaggcataagtaaccattttatttgtttaccctggctcaattt
gcaaagaacttccatgtgcattgcctcgttcagtcctcacaatggtcctg
agtgtcctgctagtgtcttcattttgaagttacagatgatataggatgag
aagagcaaataccttgttcaacttcccacagctagagattaatatggatt
tctaaaatcccagccccacagctgaaggccatgggaagctgagaatgtaa
acagataccatgaact
gaattctccatgggttcatagatatgggacaaaatagggctgtgtggata
gagtagagattctggtcgtgtaagccacttgttttttaacttgagaccca
ataaaactgttgtggcatgatgccatcctctacaaagttcatactctgga
tctgtataattgagttacaaaaaataattgcaccacccctcataatgcaa
taatgctttatttatggtcttgggctacattcgtagttagtgttcctgca
ggccaggaaggatatcggttgatggagtgtttgtgtgcatgtgtgtatgt
cggactctgtagtggatcaggaacacatgtccattactaatatattgatt
ttcatagtcccttattctactatgatcatgaatcttggtgatctcttcca
tgtatactatgtttgttgtaattttttatttgaatactgttcttaaaaat
ctaatgtatatactttttttttggagaaagtttacaattaatcgccatct
cttccctccattgcaaagattatcttggaaatctggaaatttaatcacaa
atcattctgccttacataattttgtttcatttggcttgtgtgtttataaa
gtttataatcattatgattgcatcatattgttagctggcttcctacactt
cctgttgtttttcagtctcactgttcatacttcttttccctctagattga
aattttctttccaatcatatgcttagagtttcttcaggaagggcatttta
atgataaaccctcagaaaacatttagttcctcattgttcttaagtggtag
tttagctggatatagaattataagtggagagttactctttctcaacactt
aatatactatttcatcatttaaaatttacattgctgctatgaatgaaatg
agactgaactacacattattttcttagtagataatgtgcctcttctctcc
agatgttgtcaatatttgccaattttctcctacctttccagttttatgct
taacatggttcaacagtggagctcattctgggatgcactggtgttcccaa
actcaagaatttgctttttggttatgctttgggggttaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166685260_166685925
seq2: B6Ng01-100N01.b_50_715 (reverse)

seq1  AGTTCATGGTATCTGTTTACATTCTCAGCTTCCCATGGCCTTCAGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGTATCTGTTTACATTCTCAGCTTCCCATGGCCTTCAGCTGTG  50

seq1  GGGCTGGGATTTTAGAAATCCATATTAATCTCTAGCTGTGGGAAGTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGATTTTAGAAATCCATATTAATCTCTAGCTGTGGGAAGTTGAA  100

seq1  CAAGGTATTTGCTCTTCTCATCCTATATCATCTGTAACTTCAAAATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATTTGCTCTTCTCATCCTATATCATCTGTAACTTCAAAATGAAG  150

seq1  ACACTAGCAGGACACTCAGGACCATTGTGAGGACTGAACGAGGCAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCAGGACACTCAGGACCATTGTGAGGACTGAACGAGGCAATGCA  200

seq1  CATGGAAGTTCTTTGCAAATTGAGCCAGGGTAAACAAATAAAATGGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGTTCTTTGCAAATTGAGCCAGGGTAAACAAATAAAATGGTTAC  250

seq1  TTATGCCTCAAATAGCCCTCATCCCAGATTGCCTTTCTTGTGTGTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTCAAATAGCCCTCATCCCAGATTGCCTTTCTTGTGTGTGGATA  300

seq1  TGGCTCCTGATTCCTTTTGAGAAATGCTGTGAAGGTCGAGCTGTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTGATTCCTTTTGAGAAATGCTGTGAAGGTCGAGCTGTTTTATC  350

seq1  CATCTTTACAACCCCTAACATGCTTTACACATGCAGGCATACATTAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACAACCCCTAACATGCTTTACACATGCAGGCATACATTAGGAC  400

seq1  ATGGAACGGAGAGTATTTAGTATGGGGTGGAGCCGATCTTCTCTTCATTC  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGGAACGGAGAGTATTTAGTATGGGGTGGAGCCGATTTTCTCTTCATTC  450

seq1  AGCGAAGCAAATTATCCATCGCTGCATCATTTCTCTATTTAGCCAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGCAAATTATCCATCGCTGCATCATTTCTCTATTTAGCCAGCAAT  500

seq1  CAATACACACATTTGCCCTTACAATGTTTTACTAGAAGATTGCTTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACACATTTGCCCTTACAATGTTTTACTAGAAGATTGCTTTCATG  550

seq1  GGGAAGAGGGTGAGTTAGGCCCCCCCCCCCCCGCCACTGTACCCCAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGGTGAGTTAGGCCCCCCCCCCCCCGCCACTGTACCCCAATGG  600

seq1  GTACCACATGTTCAAAGCCTGCAGAGCAAGTCACCAGCACAATTCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACATGTTCAAAGCCTGCAGAGCAAGTCACCAGCACAATTCATCAA  650

seq1  ATGATTATAGGAATTC  666
      ||||||||||||||||
seq2  ATGATTATAGGAATTC  666

seq1: chr1_166545206_166546307
seq2: B6Ng01-100N01.g_68_1160

seq1  GAATTCTCCATGGGTTCATAGATATGGGACAAAATAGGGCTGTGTGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGGTTCATAGATATGGGACAAAATAGGGCTGTGTGGATA  50

seq1  GAGTAGAGATTCTGGTCGTGTAAGCCACTTGTTTTTTAACTTGAGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGATTCTGGTCGTGTAAGCCACTTGTTTTTTAACTTGAGACCCA  100

seq1  ATAAAACTGTTGTGGCATGATGCCATCCTCTACAAAGTTCATACTCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGTTGTGGCATGATGCCATCCTCTACAAAGTTCATACTCTGGA  150

seq1  TCTGTATAATTGAGTTACAAAAAATAATTGCACCACCCCTCATAATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAATTGAGTTACAAAAAATAATTGCACCACCCCTCATAATGCAA  200

seq1  TAATGCTTTATTTATGGTCTTGGGCTACATTCGTAGTTAGTGTTCCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTATTTATGGTCTTGGGCTACATTCGTAGTTAGTGTTCCTGCA  250

seq1  GGCCAGGAAGGATATCGGTTGATGGAGTGTTTGTGTGCATGTGTGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAGGATATCGGTTGATGGAGTGTTTGTGTGCATGTGTGTATGT  300

seq1  CGGACTCTGTAGTGGATCAGGAACACATGTCCATTACTAATATATTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTCTGTAGTGGATCAGGAACACATGTCCATTACTAATATATTGATT  350

seq1  TTCATAGTCCCTTATTCTACTATGATCATGAATCTTGGTGATCTCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTCCCTTATTCTACTATGATCATGAATCTTGGTGATCTCTTCCA  400

seq1  TGTATACTATGTTTGTTGTAATTTTTTATTTGAATACTGTTCTTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTATGTTTGTTGTAATTTTTTATTTGAATACTGTTCTTAAAAAT  450

seq1  CTAATGTATATACTTTTTTTTTGGAGAAAGTTTACAATTAATCGCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTATATACTTTTTTTTTGGAGAAAGTTTACAATTAATCGCCATCT  500

seq1  CTTCCCTCCATTGCAAAGATTATCTTGGAAATCTGGAAATTTAATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCATTGCAAAGATTATCTTGGAAATCTGGAAATTTAATCACAA  550

seq1  ATCATTCTGCCTTACATAATTTTGTTTCATTTGGCTTGTGTGTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTGCCTTACATAATTTTGTTTCATTTGGCTTGTGTGTTTATAAA  600

seq1  GTTTATAATCATTATGATTGCATCATATTGTTAGCTGGCTTCCTACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAATCATTATGATTGCATCATATTGTTAGCTGGCTTCCTACACTT  650

seq1  CCTGTTGTTTTTCAGTCTCACTGTTCATACTTCTTTTCCCTCTAGATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTTTTTCAGTCTCACTGTTCATACTTCTTTTCCCTCTAGATTGA  700

seq1  AATTTTCTTTCCAATCATATGCTTAGAGTTTCTTCAGGAAGGGCATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTTCCAATCATATGCTTAGAGTTTCTTCAGGAAGGGCATTTTA  750

seq1  ATGATAAACCCTCAGAAAACATTTAGTTCCTCATTGTTCTTAAGTGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAACCCTCAGAAAACATTTAGTTCCTCATTGTTCTTAAGTGGTAG  800

seq1  TTTAGCTGGATATAGAATTATAAGTGGAGAGTTACTCTTTCTCAACACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGATATAGAATTATAAGTGGAGAGTTACTCTTTCTCAACACTT  850

seq1  AATATACTATTTCATCATTTTAAAATTTACATTGCTGCTATTGAATGAAA  900
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AATATACTATTTCATCA-TTTAAAATTTACATTGCTGCTA-TGAATGAAA  898

seq1  TGAGACTGAACTACACATTA-TTTCTTAGTAGATAATGTGCCTCTTCTCT  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGACTGAACTACACATTATTTTCTTAGTAGATAATGTGCCTCTTCTCT  948

seq1  CCAGATGTTGTCAATATTTGCCAATATTTTCTCCTTACCTTTCCAGTTTT  999
      |||||||||||||||||||||||  ||||||||| |||||||||||||||
seq2  CCAGATGTTGTCAATATTTGCCA--ATTTTCTCC-TACCTTTCCAGTTTT  995

seq1  ATTGCTTTAACATGGTTCAACATGTGAGCTCATTCTTGGGATGCACT-GT  1048
      | ||| ||||||||||||||||   |||||||||| ||||||||||| ||
seq2  A-TGC-TTAACATGGTTCAACAGTGGAGCTCATTC-TGGGATGCACTGGT  1042

seq1  GTTCCCAAACTTCAAAGGATTTTGCTTTTT-GTTATGTCTTTTGGGGTTA  1097
      |||||||||| ||||  || |||||||||| |||||| |||| |||||||
seq2  GTTCCCAAAC-TCAA--GAATTTGCTTTTTGGTTATG-CTTTGGGGGTTA  1088

seq1  AACAT  1102
      |||||
seq2  AACAT  1093