BAC Information

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BAC

Clone NameB6Ng01-101B10
Chromosome1 (Build37)
Map Location 93,328,970 - 93,511,736
singlet/doubletdoublet
Overlap genePer2, Traf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B10.bB6Ng01-101B10.g
ACCDH910388DH910389
length9891,109
definitionDH910388|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B10, 5' end.DH910389|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,510,740 - 93,511,736)(93,328,970 - 93,330,105)
sequence
gaattccactgttctaaatgctcacatctaggtcctgcttttctggggtt
cagtctccgctggcgctttgtgttgtgatcagtttaggagtctggggtgg
ggggacgatgggctccctggccagcgctcagcatggctgctaaggcaagg
cccctcaaacaccacagcagcttcctccaatcaacaaaaaggagccccag
tctggaggccagaagtccacagccatggtgtccccacggttgtcacttcc
ctgtttggcttgtagaccccatcttctccctgtcctcgtatgaatttcac
tgcatttctgtctcagtctctacctttttataagggcaccagtcacatca
gattggggtaccctgataacctcattttgacttaaaatccatacaatttt
gaagttgattttgaatatatgaaagtgggtagggacctaacttagcccac
aggttccaattcatccacccaactggccatttggtcagctgccaggctgg
gtcagggtacttagtgcagggtactccccaactgacagtgcgcgtgagca
gatttcctgcaccctaggtccctgcatggctgattctagcagacaattca
cacatcacacagatgcctaccatgtagggaaggtggcttagccctgggag
aggtggggaaaggggaccctagagctctatttcttaatcctgggtcctgt
taagactaccaagtcactgtcatgagggcctgcctcgttcacagcctgac
tgccaggcaaccaagcatgaaggagccagactatacccaagttctgcatg
ttcaaggcagcagtcccaggccctctggaaacaaggtcccgtctggactc
tacaattgccaagtgttttattttcctggaatttcagatcaaaggacatg
tttagactctggctgctatcccatttctgcggggaatcataacggtaaca
tcaattatattcgtgtgggcagaaatccagaaggaaaaa
gaattcattctgtagacaaggctggcctcgaactcagagattcatctacc
ggcttctgcctcccaagtgctgggatcaaaggtggagccaccaccaccac
caccaggcttgtttggtctctgtctctctctcattttatgtgcattggta
cttggcctctgtgtatgtctgtgtgagggtttcagatcccttgaaactgg
tatgacagacagttatgagctgccatgtgggtattgaacctgcaattgaa
cctaggtcctctggaagagcagccagtgctcccaaccactgagccatctc
tccagcctcggcttgttttctttttaaaaagcagaataaatgtagatgtc
ttaaggaaaagtgagcgctcccaagagtgagggctccgggaggagccaga
ggacatcctttttacctgcaacagatgcttccttctgtcctccagactca
tgagaaacgtgacttttggtttgaatcttgccactggttttaaaaattcc
cttgaagaaaaacaataaggaacacgttattcattctaggagaccctctt
ctgtcggccccccacagtgagggcagagaagccaacatggggtggagcaa
cagagagaatgactgggggatggagtccagggccttgcacacacagggca
agtgctcaccacagagcgtactcactacttctaacccagactcggaaatc
ctgatggaacgcccatgatcccagagggagacacagtaaaggaactgcta
aggagtccataccaccctccaactaaggttgtttccttaggtgcttcttt
gcccacctacgccattttcttttatattttttaactataggcagctgctg
caattggaaatttaagcaaatcccagggaactgagccagaggagaaggca
tctgagctactggttcaccactgccggggtatttctgatcatgctttaac
tcggacctgcgctctcaggagagaacaaaaggacgtcggatcttctccgg
gagactcctcctggccattgctgtccctgaataatgcagctcagagggtc
tgggatccgtaacgccagctccatagccactggaacccgttgggggacat
ggttggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93510740_93511736
seq2: B6Ng01-101B10.b_46_1034 (reverse)

seq1  TTTTTCCTTCTGGTTCTCTGCCCACACTGATAGTAATTGACTGTTACCCG  50
      ||||||||||||| | |||||||||||  ||| ||||||| ||||| |||
seq2  TTTTTCCTTCTGGATTTCTGCCCACACGAATA-TAATTGA-TGTTA-CCG  47

seq1  TTATGATTCCCCGCAGAAATGGGAATAGCAGCCCAGAGTCTTAAAACAAT  100
      ||||||||||||||||||||||| ||||||| |||||||||  |||| ||
seq2  TTATGATTCCCCGCAGAAATGGG-ATAGCAG-CCAGAGTCT--AAAC-AT  92

seq1  GTCCTTTGATCTGAAAATTCCAGG-AAATAAAACACCTTTGCAATTGTGG  149
      ||||||||||||| |||||||||| |||||||||| ||| |||||||| |
seq2  GTCCTTTGATCTG-AAATTCCAGGAAAATAAAACA-CTTGGCAATTGTAG  140

seq1  AGTCCAGACGGGACCTTGTTTCCAGAGGGCCTGGGGCTGCTGCCCTGAAC  199
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGTCCAGACGGGACCTTGTTTCCAGAGGGCCTGGGACTGCTGCCTTGAAC  190

seq1  CTGCAGGACTTGGGTATAGTCTGGCTCCTTCCTGCTTGGTTGCCTGGCAG  249
       ||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCAGAACTTGGGTATAGTCTGGCTCCTTCATGCTTGGTTGCCTGGCAG  240

seq1  TCAGGCTGTGAACGAGGCAGGCCCTCATGACAGTGACTTGGTAGTCTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTGAACGAGGCAGGCCCTCATGACAGTGACTTGGTAGTCTTAA  290

seq1  CAGGACCCAGGATTAAGAAATAG-GCTCTAGGGTCCCCTTTCCCCACCTC  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGGACCCAGGATTAAGAAATAGAGCTCTAGGGTCCCCTTTCCCCACCTC  340

seq1  TCCCAGGGCTAAGCCACCTTCCCTACATGGTAGGCATCTGTGTGATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCTAAGCCACCTTCCCTACATGGTAGGCATCTGTGTGATGTGT  390

seq1  GAATTGTCTGCTAGAATCAGCCATGCAGGGACCTAGGGTGCAGGAAATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCTGCTAGAATCAGCCATGCAGGGACCTAGGGTGCAGGAAATCT  440

seq1  GCTCACGCGCACTGTCAGTTGGGGAGTACCCTGCACTAAGTACCCTGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGCGCACTGTCAGTTGGGGAGTACCCTGCACTAAGTACCCTGACC  490

seq1  CAGCCTGGCAGCTGACCAAATGGCCAGTTGGGTGGATGAATTGGAACCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCAGCTGACCAAATGGCCAGTTGGGTGGATGAATTGGAACCTG  540

seq1  TGGGCTAAGTTAGGTCCCTACCCACTTTCATATATTCAAAATCAACTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAAGTTAGGTCCCTACCCACTTTCATATATTCAAAATCAACTTCA  590

seq1  AAATTGTATGGATTTTAAGTCAAAATGAGGTTATCAGGGTACCCCAATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATGGATTTTAAGTCAAAATGAGGTTATCAGGGTACCCCAATCT  640

seq1  GATGTGACTGGTGCCCTTATAAAAAGGTAGAGACTGAGACAGAAATGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACTGGTGCCCTTATAAAAAGGTAGAGACTGAGACAGAAATGCAG  690

seq1  TGAAATTCATACGAGGACAGGGAGAAGATGGGGTCTACAAGCCAAACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCATACGAGGACAGGGAGAAGATGGGGTCTACAAGCCAAACAGG  740

seq1  GAAGTGACAACCGTGGGGACACCATGGCTGTGGACTTCTGGCCTCCAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACAACCGTGGGGACACCATGGCTGTGGACTTCTGGCCTCCAGAC  790

seq1  TGGGGCTCCTTTTTGTTGATTGGAGGAAGCTGCTGTGGTGTTTGAGGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCCTTTTTGTTGATTGGAGGAAGCTGCTGTGGTGTTTGAGGGGC  840

seq1  CTTGCCTTAGCAGCCATGCTGAGCGCTGGCCAGGGAGCCCATCGTCCCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTAGCAGCCATGCTGAGCGCTGGCCAGGGAGCCCATCGTCCCCC  890

seq1  CACCCCAGACTCCTAAACTGATCACAACACAAAGCGCCAGCGGAGACTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGACTCCTAAACTGATCACAACACAAAGCGCCAGCGGAGACTGA  940

seq1  ACCCCAGAAAAGCAGGACCTAGATGTGAGCATTTAGAACAGTGGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAAAAGCAGGACCTAGATGTGAGCATTTAGAACAGTGGAATTC  989

seq1: chr1_93328970_93330105
seq2: B6Ng01-101B10.g_71_1179

seq1  GAATTCATTCTGTAGACAAGGCTGGCCTCGAACTCAGAGATTCATCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGACAAGGCTGGCCTCGAACTCAGAGATTCATCTACC  50

seq1  GGCTTCTGCCTCCCAAGTGCTGGGATCAAAGGTGGAGCCACCACCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGCCTCCCAAGTGCTGGGATCAAAGGTGGAGCCACCACCACCAC  100

seq1  CACCAGGCTTGTTTGGTCTCTGTCTCTCTCTCATTTTATGTGCATTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTTGTTTGGTCTCTGTCTCTCTCTCATTTTATGTGCATTGGTA  150

seq1  CTTGGCCTCTGTGTATGTCTGTGTGAGGGTTTCAGATCCCTTGAAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTCTGTGTATGTCTGTGTGAGGGTTTCAGATCCCTTGAAACTGG  200

seq1  TATGACAGACAGTTATGAGCTGCCATGTGGGTATTGAACCTGCAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGACAGTTATGAGCTGCCATGTGGGTATTGAACCTGCAATTGAA  250

seq1  CCTAGGTCCTCTGGAAGAGCAGCCAGTGCTCCCAACCACTGAGCCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCCTCTGGAAGAGCAGCCAGTGCTCCCAACCACTGAGCCATCTC  300

seq1  TCCAGCCTCGGCTTGTTTTCTTTTTAAAAAGCAGAATAAATGTAGATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTCGGCTTGTTTTCTTTTTAAAAAGCAGAATAAATGTAGATGTC  350

seq1  TTAAGGAAAAGTGAGCGCTCCCAAGAGTGAGGGCTCCGGGAGGAGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAAGTGAGCGCTCCCAAGAGTGAGGGCTCCGGGAGGAGCCAGA  400

seq1  GGACATCCTTTTTACCTGCAACAGATGCTTCCTTCTGTCCTCCAGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCTTTTTACCTGCAACAGATGCTTCCTTCTGTCCTCCAGACTCA  450

seq1  TGAGAAACGTGACTTTTGGTTTGAATCTTGCCACTGGTTTTAAAAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACGTGACTTTTGGTTTGAATCTTGCCACTGGTTTTAAAAATTCC  500

seq1  CTTGAAGAAAAACAATAAGGAACACGTTATTCATTCTAGGAGACCCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAAAACAATAAGGAACACGTTATTCATTCTAGGAGACCCTCTT  550

seq1  CTGTCGGCCCCCCACAGTGAGGGCAGAGAAGCCAACATGGGGTGGAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGCCCCCCACAGTGAGGGCAGAGAAGCCAACATGGGGTGGAGCAA  600

seq1  CAGAGAGAATGACTGGGGGATGGAGTCCAGGGCCTTGCACACACAGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAATGACTGGGGGATGGAGTCCAGGGCCTTGCACACACAGGGCA  650

seq1  AGTGCTCACCACAGAGCGTACTCACTACTTCTAACCCAGACTCGGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCACCACAGAGCGTACTCACTACTTCTAACCCAGACTCGGAAATC  700

seq1  CTGATGGAACGCCCATGATCCCAGAGGGAGACACAGTAAAGGAACTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAACGCCCATGATCCCAGAGGGAGACACAGTAAAGGAACTGCTA  750

seq1  AGGAGTCCATACCACCCTCCAACTAAGGTTTTGTTTCCTTAAGGTGCTGC  800
      ||||||||||||||||||||||||||||  |||||||||| ||||||| |
seq2  AGGAGTCCATACCACCCTCCAACTAAGG--TTGTTTCCTT-AGGTGCTTC  797

seq1  TTTGCCCACCTACGCCATTTTCCTTTATATATTTTAACTATAGGCAGGCT  850
      |||||||||||||||||||||| ||||||| ||||||||||||||| |||
seq2  TTTGCCCACCTACGCCATTTTCTTTTATATTTTTTAACTATAGGCA-GCT  846

seq1  GCTGCAACTGGAAATATGAAGCAAATCCCAGGGGAACTGAGCCAGAGGAG  900
      ||||||| ||||||| | |||||||||||| |||||||||||||||||||
seq2  GCTGCAATTGGAAAT-TTAAGCAAATCCCA-GGGAACTGAGCCAGAGGAG  894

seq1  AAGGCAACTGAGCCACTGGTCCAGCCACTGCCTGGGTATTTCTGATCATG  950
      |||||| |||||| |||||| || |||||||| |||||||||||||||||
seq2  AAGGCATCTGAGCTACTGGTTCA-CCACTGCCGGGGTATTTCTGATCATG  943

seq1  CTTTCTAACTCGGACCTTGCGCTTCTCAGGGAGAGGAACAGAGAGGGACG  1000
      |||  ||||||||||| ||||| ||||| ||||| ||||  | | |||||
seq2  CTT--TAACTCGGACC-TGCGC-TCTCA-GGAGA-GAAC--AAAAGGACG  985

seq1  TACGGATCTCCTCCGGTGAGACTCCTCTTGGCCATTGCTGTCGCTGGATG  1050
      | ||||||| |||||| |||||||||| |||||||||||||| ||| || 
seq2  T-CGGATCTTCTCCGG-GAGACTCCTCCTGGCCATTGCTGTCCCTGAATA  1033

seq1  ATGTCTGGCTCATGAGGTGTTCGTGGGATCCGTTACTGCCCAGGCTCCCA  1100
      |||    ||||| |||| ||   |||||||||| || |||   ||| |||
seq2  ATG--CAGCTCA-GAGG-GT--CTGGGATCCGTAAC-GCC--AGCT-CCA  1073

seq1  TAGCCACTGGAGCCGCTGTGGGGGACA-GGCTGGGGG  1136
      ||||||||||| || |  ||||||||| || ||||||
seq2  TAGCCACTGGAACC-CGTTGGGGGACATGGTTGGGGG  1109