BAC Information

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BAC

Clone NameB6Ng01-101G05
Chromosome1 (Build37)
Map Location 88,329,424 - 88,476,340
singlet/doubletdoublet
Overlap geneLOC100040414, Ptma, Pde6d
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Downstream geneCops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101G05.bB6Ng01-101G05.g
ACCDH910585DH910586
length1,0711,079
definitionDH910585|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G05, 5' end.DH910586|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,329,424 - 88,330,510)(88,475,254 - 88,476,340)
sequence
gaattcaagaccagcttgttctacgtagcaaattccagaccaacctcggc
tctcgggaacttttatctcaagagaacacacaaaacaaaacaaacccaca
aagtcaactttcttccttcttgggatttcctgtgctgtgtatttatcagg
atccttcagtagatgtgaccttggtgtcatatgatgtactttgggcaaaa
acaggactggtgagttgtattgatctaggaaaggataatgggaacatctg
gtgttaccacccttctcatgggttagatctctcccttcccaccgtattct
gcttttcctgcaagcagctacaaggtgtatatgtattcatgtctatgtcc
cccactgcagacaggtggcatcttacccttcacacctcctcatgaaatga
tcctcagcagacaaaaatcacctttccctagcccggcagtggtggcacac
agctttaatcccagcacttgggaggcagaggcagacggatttctgagttc
aaggacagcctggtctacaaagtgagttccaggatagccagggctacaca
ccgaaactctgtcttgaaacacacgccccccccccccaaaaaaaaaatca
gctttctcacaagcaggaccagggccatacatgggaccagatgtaggtcc
aaggccaggcgcagcccacgcatggaccctagagcatgccagccacacca
cataagcttgtgagtccctcccacagctttccttcgatagtgtgctttgg
agacaggacgtttggatcttcttcatcgctctgcccaactccatgaacta
aaaaaaaatatactttacatctgaattttatatgtcaaccaatgaggaaa
caggttgtctaccaacttctagttataatactttcaaactgcagcttata
ggtgaggaaaaatatctctccacacatgaattcaaccggacttgacagac
taattagaaacagagtgcccagtctgggagagtaactgagctgtgcagag
gttctgggtctgtcacactgtttcaggtttgtattcgccatatgtggaag
aaacacggggggggggggggg
gaattccaaggatctaacaccctcttgcacctgcccatatgtggcacata
taaactcatgtaagcacacacacacacacacacacacatatatatatata
cacacacacacatataagtaataagtttttaaaagagaaagaaaacagga
actagatggcttttcattcccattttttaaaaaagataattttatgttag
aaacaacttgatcattcaccacttttggttggataatttttctctgaact
gttttcagattgtttctttaaaaaaattgtatttactatttccttaatta
ctttctgttgctatgatgagacactgtgaccaagggaggaacttagagaa
aaagggggcttatggtttcagagggttagcggctgtgaccgccatgatgg
ggagcctggcaacaggtaggcagacatggtactggaccttatatctaatc
cacaaatactaggctcaaactgctaactgaaaccttgagggtttttgaaa
gcccaaaggccaattcccaatgacacacctcctccaacaaggccacacct
ctttgcctcttttttttttaagatttatttattgttttatttaagtacac
tataactgtcttcagacacaagggaagagggcatcagatctcattacaga
tggtttgtgagctatcatgtggttgctaggaattgaactcaggacctctg
gaagagcagtcagtgctcttaaccactgagccatctctccagccaaaggc
cacacctcttaatcctccccaaactgttccacaaactggggagtaaccaa
acattcaaatatatgacttctgcaaaccatgctcatttcaaaataacaca
tttactattaaagaaaaagcaccatatattctcccatcaacaatactcaa
ttttgcatgtcgactttttttatttttgaaatcttatttcattgaaaaga
aatgataaattttaatttgtatttttgcatctcctatccttggaaaataa
taaagcatagttatatgttattttatatacatagcacagttagaaatgtt
atgctaactagctaggtgttggaggcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88329424_88330510
seq2: B6Ng01-101G05.b_48_1118

seq1  GAATTCAAGACCAGCTTGTTCTACGTAGCAAATTCCAGACCAACCTCGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAGCTTGTTCTACGTAGCAAATTCCAGACCAACCTCGGC  50

seq1  TCTCGGGAACTTTTATCTCAAGAGAACACACAAAACAAAACAAACCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAACTTTTATCTCAAGAGAACACACAAAACAAAACAAACCCACA  100

seq1  AAGTCAACTTTCTTCCTTCTTGGGATTTCCTGTGCTGTGTATTTATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTTTCTTCCTTCTTGGGATTTCCTGTGCTGTGTATTTATCAGG  150

seq1  ATCCTTCAGTAGATGTGACCTTGGTGTCATATGATGTACTTTGGGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAGTAGATGTGACCTTGGTGTCATATGATGTACTTTGGGCAAAA  200

seq1  ACAGGACTGGTGAGTTGTATTGATCTAGGAAAGGATAATGGGAACATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGGTGAGTTGTATTGATCTAGGAAAGGATAATGGGAACATCTG  250

seq1  GTGTTACCACCCTTCTCATGGGTTAGATCTCTCCCTTCCCACCGTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACCACCCTTCTCATGGGTTAGATCTCTCCCTTCCCACCGTATTCT  300

seq1  GCTTTTCCTGCAAGCAGCTACAAGGTGTATATGTATTCATGTCTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTGCAAGCAGCTACAAGGTGTATATGTATTCATGTCTATGTCC  350

seq1  CCCACTGCAGACAGGTGGCATCTTACCCTTCACACCTCCTCATGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCAGACAGGTGGCATCTTACCCTTCACACCTCCTCATGAAATGA  400

seq1  TCCTCAGCAGACAAAAATCACCTTTCCCTAGCCCGGCAGTGGTGGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCAGACAAAAATCACCTTTCCCTAGCCCGGCAGTGGTGGCACAC  450

seq1  AGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTC  500

seq1  AAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCAGGGCTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCAGGGCTACACA  550

seq1  CCGAAACTCTGTCTTGAAACACACGCCCCCCCCCCCCAAAAAAAAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAACTCTGTCTTGAAACACACGCCCCCCCCCCCCAAAAAAAAAATCA  600

seq1  GCTTTCTCACAAGCAGGACCAGGGCCATACATGGGACCAGATGTAGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCACAAGCAGGACCAGGGCCATACATGGGACCAGATGTAGGTCC  650

seq1  AAGGCCAGGCGCAGCCCACGCATGGACCCTAGAGCATGCCAGCCACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGCGCAGCCCACGCATGGACCCTAGAGCATGCCAGCCACACCA  700

seq1  CATAAGCTTGTGAGTCCCTCCCACAGCTTTCCTTCGATAGTGTGCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTTGTGAGTCCCTCCCACAGCTTTCCTTCGATAGTGTGCTTTGG  750

seq1  AGACAGGACGTTTGGATCTTCTTCATCGCTCTGCCCAACTCCATGAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGACGTTTGGATCTTCTTCATCGCTCTGCCCAACTCCATGAACTA  800

seq1  AAAAAAAATATTACTTTACATCTGAATTTTATATGTCAACCAATGAGGAA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATA-TACTTTACATCTGAATTTTATATGTCAACCAATGAGGAA  849

seq1  ACAGGTTGTCTACCAACTTCTAGTATTAATACTTTCAAACTGCAGC-TAT  899
      ||||||||||||||||||||||||  |||||||||||||||||||| |||
seq2  ACAGGTTGTCTACCAACTTCTAGTTATAATACTTTCAAACTGCAGCTTAT  899

seq1  AGGTGAGGAAAAATATCTCTCCACACATGAATTCAACCGGACTTGAACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  AGGTGAGGAAAAATATCTCTCCACACATGAATTCAACCGGACTTGA--CA  947

seq1  GACTAACTAGAAACAGGAGTGCCCCAGCCTGGGAGAGTAACTGGAAGGCT  999
      |||||| |||||||| ||||| ||||| |||||||||||||||    |||
seq2  GACTAATTAGAAACA-GAGTG-CCCAGTCTGGGAGAGTAACTG---AGCT  992

seq1  GGTGCCAAGAGGTTCTGGGTCTGTCACACCTGGTTTCAGGGTTTTGTATT  1049
       ||||  ||||||||||||||||||||||   ||||||||  ||||||||
seq2  -GTGC--AGAGGTTCTGGGTCTGTCACAC--TGTTTCAGG--TTTGTATT  1035

seq1  CCGCCATGATGTGGAAGAGACACGGGGGGGGGGGGGGG  1087
       |||||| |||||||||| |||||||||||||||||||
seq2  -CGCCAT-ATGTGGAAGAAACACGGGGGGGGGGGGGGG  1071

seq1: chr1_88475254_88476340
seq2: B6Ng01-101G05.g_69_1147 (reverse)

seq1  AGTGCCTCCAACACCTAGCTAGTTTAGCATTAACTATGTTCTAACTGTGC  50
      |||||||||||||||||||||| |||||| |||| || ||||||||||||
seq2  AGTGCCTCCAACACCTAGCTAG-TTAGCA-TAAC-AT-TTCTAACTGTGC  46

seq1  TATGTATATAAAATAACATATAACTATGCTTTATTATTTCTCCAGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||| |||| ||  |
seq2  TATGTATATAAAATAACATATAACTATGCTTTATTATTT-TCCA-AGGAT  94

seq1  AGAAGATGCAGAAATACAAATTAAAATTTATCATTTTCTTTTCAATGAAA  150
      || ||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AGGAGATGCAAAAATACAAATTAAAATTTATCA-TTTCTTTTCAATGAAA  143

seq1  TAAGATTTTCAAAAATAAAAAAAGTCGACATGCAAAATTGAGTATTGTTG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGA-TTTCAAAAATAAAAAAAGTCGACATGCAAAATTGAGTATTGTTG  192

seq1  ATGGGAGAATATAATGGTGCTTTTTTCTTTAATAGT-AATGTGTTATTTT  249
      |||||||||||| ||||||| ||||||||||||||| |||||||||||||
seq2  ATGGGAGAATAT-ATGGTGC-TTTTTCTTTAATAGTAAATGTGTTATTTT  240

seq1  G-AATGAGCATGGTTTGCAGAAGTTCATATATTTGAATGTTTGGTTACTC  298
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAATGAGCATGGTTTGCAGAAG-TCATATATTTGAATGTTTGGTTACTC  289

seq1  CCCAGTTTGTGGAACAGTTTGGGGAGGATTAAGAGGTGTGGCCTTTGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTGTGGAACAGTTTGGGGAGGATTAAGAGGTGTGGCCTTTGGCT  339

seq1  GGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT  389

seq1  GAGTTCAATTCCTAGCAACCACATGATAGCTCAC-AACCATCTGTAATGA  447
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGTTCAATTCCTAGCAACCACATGATAGCTCACAAACCATCTGTAATGA  439

seq1  GATCTGATGCCCTCTTCCCTTGTGTCTGAAGACAGTTATAGTGTACTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGCCCTCTTCCCTTGTGTCTGAAGACAGTTATAGTGTACTTAA  489

seq1  ATAAAACAATAAATAAATCTTAAAAAAAAAAGAGGCAAAGAGGTGTGGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAATAAATAAATCTTAAAAAAAAAAGAGGCAAAGAGGTGTGGCC  539

seq1  TTGTTGGAGGAGGTGTGTCATTGGGAATTGGCCTTTGGGCTTTCAAAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGGAGGTGTGTCATTGGGAATTGGCCTTTGGGCTTTCAAAAAC  589

seq1  CCTCAAGGTTTCAGTTAGCAGTTTGAGCCTAGTATTTGTGGATTAGATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGTTTCAGTTAGCAGTTTGAGCCTAGTATTTGTGGATTAGATAT  639

seq1  AAGGTCCAGTACCATGTCTGCCTACCTGTTGCCAGGCTCCCCATCATGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGTACCATGTCTGCCTACCTGTTGCCAGGCTCCCCATCATGGC  689

seq1  GGTCACAGCCGCTAACCCTCTGAAACCATAAGCCCCCTTTTTCTCTAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGCCGCTAACCCTCTGAAACCATAAGCCCCCTTTTTCTCTAAGT  739

seq1  TCCTCCCTTGGTCACAGTGTCTCATCATAGCAACAGAAAGTAATTAAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTGGTCACAGTGTCTCATCATAGCAACAGAAAGTAATTAAGGA  789

seq1  AATAGTAAATACAATTTTTTTAAAGAAACAATCTGAAAACAGTTCAGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAATACAATTTTTTTAAAGAAACAATCTGAAAACAGTTCAGAGA  839

seq1  AAAATTATCCAACCAAAAGTGGTGAATGATCAAGTTGTTTCTAACATAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCCAACCAAAAGTGGTGAATGATCAAGTTGTTTCTAACATAAA  889

seq1  ATTATCTTTTTTAAAAAATGGGAATGAAAAGCCATCTAGTTCCTGTTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTTTTTAAAAAATGGGAATGAAAAGCCATCTAGTTCCTGTTTTC  939

seq1  TTTCTCTTTTAAAAACTTATTACTTATATGTGTGTGTGTGTATATATATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTAAAAACTTATTACTTATATGTGTGTGTGTGTATATATATA  989

seq1  TATGTGTGTGTGTGTGTGTGTGTGTGCTTACATGAGTTTATATGTGCCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTGTGTGTGTGCTTACATGAGTTTATATGTGCCAC  1039

seq1  ATATGGGCAGGTGCAAGAGGGTGTTAGATCCTTGGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCAGGTGCAAGAGGGTGTTAGATCCTTGGAATTC  1079