BAC Information

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BAC

Clone NameB6Ng01-101M07
Chromosome1 (Build37)
Map Location 97,541,321 - 97,694,665
singlet/doubletdoublet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101M07.bB6Ng01-101M07.g
ACCDH910849DH910850
length9661,091
definitionDH910849|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M07, 5' end.DH910850|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,694,136 - 97,694,665)(97,541,321 - 97,542,417)
sequence
gaattcttcctgttctacagtttcaatcccttcttttttttcttttttct
ttccttccttttactgaaaagagatttttctcatatattaaactctgatt
acattttctcctctgtttcttctcactctcttccttccactcccctagtt
ctttctcatctctcctttcaaccagatcaatcccatatttgctgctcact
aaaaaataaaaaagatgatttttctctccagcgactgtctaaggcaggag
cagacagaagcacacaggcctcagaagcagcagagcagctaggacagggt
ccttcctgcctccatctgcacccaagaggtcaggcttttcctcagctctt
tgtgcactggtcattccaggaaagagctggtctcccaggagtgctgacat
aggcttacagacccacagaagaaacaagctccagccagaaacagcaagag
catctaacaccagagattagcagatggttaaaggcaaacacaagactctt
accaacagaaagcaagactacttggcatcatcagaacccagtactcccac
cacagcaagtcccagatacaaccaacaaaccagaaaagcaagatatggaa
ttaaaaatcatatctcatggatacaaccaacaaaccagaaaagcaagata
tggaattaaaaatcatatctcatgatactgatagaggatgttaagaaaga
cataaataattcccttaaagaaatacaggagaacacaggtaaacaggtag
aagcccttaaggagaaaacacaaaaatcccttaaagaattacaggaaaac
aaaacaggtgaaaggaattgaacaaaaacatccaagatctaaacatggaa
atagaaacaataaggaaatcacaaaggggacaactctagagatagaaaac
ctagggaagaagtcagagcatagatgcaagtatcaccaacagaatacaga
gataggagatctcagg
gaattcacattaaatcagagaggtaatacataaatacatgatttaaattg
ttgtataattttgattaagacatttaggctttaacgtaaagctcgtgagt
gtgtcctggttactcttcttcaagatatttaaatgtattttttgttcata
gaaagatcttaacagaaagacagtctcatggttagaccatatactacaac
ctattcaaccatatacatttcaacttgatggttttaactttgggtttcat
ttattaaaaataaagttttatagtcctagtccacactttgagtaattatt
gctgccctttgaaagtatcagatttaaagtggcattcttccttctgtcca
ccatggtgtcaacaaaagttaggacataatttagagatgtccttagtttc
acagtagacacacaattaatgtttctcaatgtagaagattcctgactcat
ctttaccatttaaagttctaaatgggttttgttgttgctgttgttgttgt
tgttgctgctgttttaaatgtttttagtctgtgtagaaaatactggtggg
atttgactagaaagaaggctgtgttgttttttgttccacatactgactac
ctccaaagaagccctacacatatgggtctatgaagaagtatacaaggttg
acctgtgtgtgaagcacctttagactcagatagtacaaattcaaattctc
catgatcaaccttatatttaatagatgtcataaaatgtctaatctttcct
ttagagtttcatacttatcttgctgattatatttttcttattgtctcctc
ctcacatctgtagcctcttttcttatctcatcttggtacccattgttttc
agcatcaccttttgaacaacctttgacataaaaagcctaaatgctctaaa
cccttgaaagccatttgatatcttcagatattataagtgatgtatcatag
tcaatgctgtgctctgctaatttattagaataacttcagtcatttctaaa
aggtggtatgtaaacgttagtggtctatgctctgaaaagattcaacttaa
accctcttgctattattcaaatatttcttaatttgggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97694136_97694665
seq2: B6Ng01-101M07.b_49_578 (reverse)

seq1  TGATGCCAAGTAGTCTTGCTTTCTGTTGGTAAGAGTCTTGTGTTTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAAGTAGTCTTGCTTTCTGTTGGTAAGAGTCTTGTGTTTGCCTT  50

seq1  TAACCATCTGCTAATCTCTGGTGTTAGATGCTCTTGCTGTTTCTGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCTGCTAATCTCTGGTGTTAGATGCTCTTGCTGTTTCTGGCTGG  100

seq1  AGCTTGTTTCTTCTGTGGGTCTGTAAGCCTATGTCAGCACTCCTGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTTCTTCTGTGGGTCTGTAAGCCTATGTCAGCACTCCTGGGAGA  150

seq1  CCAGCTCTTTCCTGGAATGACCAGTGCACAAAGAGCTGAGGAAAAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTTTCCTGGAATGACCAGTGCACAAAGAGCTGAGGAAAAGCCTG  200

seq1  ACCTCTTGGGTGCAGATGGAGGCAGGAAGGACCCTGTCCTAGCTGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGGGTGCAGATGGAGGCAGGAAGGACCCTGTCCTAGCTGCTCTG  250

seq1  CTGCTTCTGAGGCCTGTGTGCTTCTGTCTGCTCCTGCCTTAGACAGTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGAGGCCTGTGTGCTTCTGTCTGCTCCTGCCTTAGACAGTCGC  300

seq1  TGGAGAGAAAAATCATCTTTTTTATTTTTTAGTGAGCAGCAAATATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAAAATCATCTTTTTTATTTTTTAGTGAGCAGCAAATATGGGA  350

seq1  TTGATCTGGTTGAAAGGAGAGATGAGAAAGAACTAGGGGAGTGGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGGTTGAAAGGAGAGATGAGAAAGAACTAGGGGAGTGGAAGGAA  400

seq1  GAGAGTGAGAAGAAACAGAGGAGAAAATGTAATCAGAGTTTAATATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGAAGAAACAGAGGAGAAAATGTAATCAGAGTTTAATATATGA  450

seq1  GAAAAATCTCTTTTCAGTAAAAGGAAGGAAAGAAAAAAGAAAAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCTCTTTTCAGTAAAAGGAAGGAAAGAAAAAAGAAAAAAAAGAA  500

seq1  GGGATTGAAACTGTAGAACAGGAAGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  GGGATTGAAACTGTAGAACAGGAAGAATTC  530

seq1: chr1_97541321_97542417
seq2: B6Ng01-101M07.g_71_1161

seq1  GAATTCACATTAAATCAGAGAGGTAATACATAAATACATGATTTAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTAAATCAGAGAGGTAATACATAAATACATGATTTAAATTG  50

seq1  TTGTATAATTTTGATTAAGACATTTAGGCTTTAACGTAAAGCTCGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATTTTGATTAAGACATTTAGGCTTTAACGTAAAGCTCGTGAGT  100

seq1  GTGTCCTGGTTACTCTTCTTCAAGATATTTAAATGTATTTTTTGTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGGTTACTCTTCTTCAAGATATTTAAATGTATTTTTTGTTCATA  150

seq1  GAAAGATCTTAACAGAAAGACAGTCTCATGGTTAGACCATATACTACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTTAACAGAAAGACAGTCTCATGGTTAGACCATATACTACAAC  200

seq1  CTATTCAACCATATACATTTCAACTTGATGGTTTTAACTTTGGGTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAACCATATACATTTCAACTTGATGGTTTTAACTTTGGGTTTCAT  250

seq1  TTATTAAAAATAAAGTTTTATAGTCCTAGTCCACACTTTGAGTAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAATAAAGTTTTATAGTCCTAGTCCACACTTTGAGTAATTATT  300

seq1  GCTGCCCTTTGAAAGTATCAGATTTAAAGTGGCATTCTTCCTTCTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTTTGAAAGTATCAGATTTAAAGTGGCATTCTTCCTTCTGTCCA  350

seq1  CCATGGTGTCAACAAAAGTTAGGACATAATTTAGAGATGTCCTTAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGTCAACAAAAGTTAGGACATAATTTAGAGATGTCCTTAGTTTC  400

seq1  ACAGTAGACACACAATTAATGTTTCTCAATGTAGAAGATTCCTGACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGACACACAATTAATGTTTCTCAATGTAGAAGATTCCTGACTCAT  450

seq1  CTTTACCATTTAAAGTTCTAAATGGGTTTTGTTGTTGCTGTTGTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCATTTAAAGTTCTAAATGGGTTTTGTTGTTGCTGTTGTTGTTGT  500

seq1  TGTTGCTGCTGTTTTAAATGTTTTTAGTCTGTGTAGAAAATACTGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTGTTTTAAATGTTTTTAGTCTGTGTAGAAAATACTGGTGGG  550

seq1  ATTTGACTAGAAAGAAGGCTGTGTTGTTTTTTGTTCCACATACTGACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTAGAAAGAAGGCTGTGTTGTTTTTTGTTCCACATACTGACTAC  600

seq1  CTCCAAAGAAGCCCTACACATATGGGTCTATGAAGAAGTATACAAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGAAGCCCTACACATATGGGTCTATGAAGAAGTATACAAGGTTG  650

seq1  ACCTGTGTGTGAAGCACCTTTAGACTCAGATAGTACAAATTCAAATTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTGTGAAGCACCTTTAGACTCAGATAGTACAAATTCAAATTCTC  700

seq1  CATGATCAACCTTATATTTAATAGATGTCATAAAATGTCTAATCTTTCC-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGATCAACCTTATATTTAATAGATGTCATAAAATGTCTAATCTTTCCT  750

seq1  TTAGAGTTTCATACTTATCTTGCTGATTATATTTTTCTTATTGTCTCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTCATACTTATCTTGCTGATTATATTTTTCTTATTGTCTCCTC  800

seq1  CTCACATCTGTAGCCTCTTTTCTTATCTCATCTTGGTACCCATTGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTGTAGCCTCTTTTCTTATCTCATCTTGGTACCCATTGTTTTC  850

seq1  AGCATCACCTTTTGAACAACC-TTGACATAAAAAGCCTAAATGCTCTAAA  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCATCACCTTTTGAACAACCTTTGACATAAAAAGCCTAAATGCTCTAAA  900

seq1  CCC-TGAAAGCCATTTGATATCTTCAAGATATTATAAGTGATGTATCATA  947
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTTGAAAGCCATTTGATATCTTC-AGATATTATAAGTGATGTATCATA  949

seq1  GTCAAATGCTGTGCTCTGCTAATTTATTAGAAATACCTTCAGTCAATTTC  997
      ||| |||||||||||||||||||||||||| |||| |||||||| |||||
seq2  GTC-AATGCTGTGCTCTGCTAATTTATTAG-AATAACTTCAGTC-ATTTC  996

seq1  TAAAAGGTGGTATGTAAAACGTAAGT-GTCTATGCTCAGAAAAGGATCCA  1046
      ||||||||||||||| |||||| ||| |||||||||| ||||| ||| ||
seq2  TAAAAGGTGGTATGT-AAACGTTAGTGGTCTATGCTCTGAAAA-GATTCA  1044

seq1  AACCTAAAACACCTCATTGCATATATTCAAATATTCTTAAATTTGAGAAA  1096
      |  || |||| |||| ||||   ||||||||||||  | |||||| ||||
seq2  A--CTTAAAC-CCTC-TTGCTATTATTCAAATATTTCTTAATTTGGGAAA  1090

seq1  A  1097
      |
seq2  A  1091