BAC Information

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BAC

Clone NameB6Ng01-103F11
Chromosome1 (Build37)
Map Location 122,831,651 - 122,983,867
singlet/doubletdoublet
Overlap geneAI848258
Upstream geneGm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneInsig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103F11.bB6Ng01-103F11.g
ACCDH911961DH911962
length9981,105
definitionDH911961|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F11, 5' end.DH911962|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,831,651 - 122,832,649)(122,982,739 - 122,983,867)
sequence
gaattccattatctttcttaatgctatgcatactcagataagttccttgg
cttagaaaaacttgattcatctggaaagttccatctggttgtaagactct
cacatgtgggtgttgttgttgttgttgttgttgttgttgttgttgttgtc
gttgtcagaattcaccttccctgacctgaataactaactaattgttcttc
aattcttctcctccttcctcctcgcctttctctcctcattctcctcttct
ctcctcttatttctgtcttctcttctcctttcctgtccctctgcctctgt
ctcccccacttctgccagatcccagaaggaacagtcaaggtgaaccagct
atcttaccactacggtgtctgagaaaatgggagggtcaagggaaaagcag
gaaggaatccgggtccacgatggctccaaaaagccttgctagccatcctg
ggcacactgcccaatgcaccatttgtgcttaaatcacttcagcttgtctt
agttgccctccaggcactagtcatatagagtcatgggcagtttctaacta
tatatattctatatattcaatatattatatacatcacatgtatttctaat
atattcaattagcaggtcatttgacttttactttttcagttagagtcatc
tatttgagcctccccccaccccatagcaggcagaattttacttaacaagc
tcaaagctctttgcttctgttttccttcctctgtgaatgtgcatgcatct
ctctggtctcaggcttcttgctcaaggaaaccaagcctttcccaaatcac
atggcagaatatcttctaacgtaatcagcttaggccagcccaggagaatt
actttgttctttatttttatataaaaatccaccaactggaacagaatata
atcaatagtggccaaacacagaggttgctgggttttgttgtttatttttt
ccaaaaatttggaccctcccttcaagaatcttaaaacacaaatgaaag
gaattccaggcagcactaggcttctccattcccacccccacatcccaacc
cactcctaatctccacccactccaacttctctggctagggatagctctca
ccagttactggagcctgagagagagagagcaaccttgaacaaaacaaaac
aaaacaaaacaaaacaaaacacagactacacttgcttcctatttcctggg
gtcagaggtagaagagtctgcctattagggtataaggtggacggtggaca
gaagccggtatgtgaggtcctacttaggagtaggagtaagtggaaacaga
aaggtttcttcaatgctgttttgaagaaaattgtaatttccactgccaac
tatttaagagcaaacacaacccactaagacttgccctggctgtctgtaaa
ttgggtgtttggtctttggtgaatggcttcaaaattcttgtttcctttcc
aaggtgtggtttcatcaacctaaaaaatccataagcgcagggctcgtttg
gaaccactgaaagcctgttggcaaataataccctcagactagaaggcact
cacgaatgcccagaactgggcaaggttgatgcaacagggccctcacatcc
tcctgtctttcactctcaccttcagaagttgccagaggcctggagagatg
gctcagttggtagagtgcttgctgtgtaagtgtgaggacccgagttcgga
tcactgggacccatataagtcactggacagtatttgtataaccagccatg
aggcagacaagagaatcccccaaagctggtggactggctttcctggcatg
ttacaaggctagacatcacaaaaagatactggctcaaactaggaggacat
aggttgtcttctgacttacacacacacaccctcaccacacacacacacac
acacacacacacaaagcgcacgcaaattcatcacacacagacacaggtta
aaaaataaggagttgctagtgttcaatcagctttatccactggcttgcat
actagtatagttcctccatttcatactggtcatactgcagtacactcaac
acacttgcctctccgattggaagagtaaagtgcagtgtctaagggcggtg
gtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122831651_122832649
seq2: B6Ng01-103F11.b_44_1041

seq1  GAATTCCATTATCTTTCTTAATGCTATGCATACTCAGATAAGTTCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATCTTTCTTAATGCTATGCATACTCAGATAAGTTCCTTGG  50

seq1  CTTAGAAAAACTTGATTCATCTGGAAAGTTCCATCTGGTTGTAAGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAAACTTGATTCATCTGGAAAGTTCCATCTGGTTGTAAGACTCT  100

seq1  CACATGTGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC  150

seq1  GTTGTCAGAATTCACCTTCCCTGACCTGAATAACTAACTAATTGTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGAATTCACCTTCCCTGACCTGAATAACTAACTAATTGTTCTTC  200

seq1  AATTCTTCTCCTCCTTCCTCCTCGCCTTTCTCTCCTCATTCTCCTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTCCTCCTTCCTCCTCGCCTTTCTCTCCTCATTCTCCTCTTCT  250

seq1  CTCCTCTTATTTCTGTCTTCTCTTCTCCTTTCCTGTCCCTCTGCCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTATTTCTGTCTTCTCTTCTCCTTTCCTGTCCCTCTGCCTCTGT  300

seq1  CTCCCCCACTTCTGCCAGATCCCAGAAGGAACAGTCAAGGTGAACCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACTTCTGCCAGATCCCAGAAGGAACAGTCAAGGTGAACCAGCT  350

seq1  ATCTTACCACTACGGTGTCTGAGAAAATGGGAGGGTCAAGGGAAAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCACTACGGTGTCTGAGAAAATGGGAGGGTCAAGGGAAAAGCAG  400

seq1  GAAGGAATCCGGGTCCACGATGGCTCCAAAAAGCCTTGCTAGCCATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATCCGGGTCCACGATGGCTCCAAAAAGCCTTGCTAGCCATCCTG  450

seq1  GGCACACTGCCCAATGCACCATTTGTGCTTAAATCACTTCAGCTTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTGCCCAATGCACCATTTGTGCTTAAATCACTTCAGCTTGTCTT  500

seq1  AGTTGCCCTCCAGGCACTAGTCATATAGAGTCATGGGCAGTTTCTAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCTCCAGGCACTAGTCATATAGAGTCATGGGCAGTTTCTAACTA  550

seq1  TATATATTCTATATATTCAATATATTATATACATCACATGTATTTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCTATATATTCAATATATTATATACATCACATGTATTTCTAAT  600

seq1  ATATTCAATTAGCAGGTCATTTGACTTTTACTTTTTCAGTTAGAGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAATTAGCAGGTCATTTGACTTTTACTTTTTCAGTTAGAGTCATC  650

seq1  TATTTGAGCCTCCCCCCACCCCATAGCAGGCAGAATTTTACTTAACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGCCTCCCCCCACCCCATAGCAGGCAGAATTTTACTTAACAAGC  700

seq1  TCAAAGCTC-TTGCTTCTG-TTTCCTTCCTCTGTGAATGTGCATGCATCT  748
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAAGCTCTTTGCTTCTGTTTTCCTTCCTCTGTGAATGTGCATGCATCT  750

seq1  CTCTGGTCTCAGGCTTCTTGCTCAAGGAAACCAAGCCTTTCCCAAATCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCTCAGGCTTCTTGCTCAAGGAAACCAAGCCTTTCCCAAATCAC  800

seq1  ATGGCAGAATATCTTCTAACGTAATCAGCTTAGGCCAGCCCAGGAGAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAATATCTTCTAACGTAATCAGCTTAGGCCAGCCCAGGAGAATT  850

seq1  ACTTTGTTCTTTATTTTTATATAAAAATCCACCAACTGGAACAGAATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCTTTATTTTTATATAAAAATCCACCAACTGGAACAGAATATA  900

seq1  ATCAATAGTGGCCAAACACAGAGGTTGCTGGGTTTTGTTGGTTTTATTTT  948
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ATCAATAGTGGCCAAACACAGAGGTTGCTGGGTTTTGTTG--TTTATTTT  948

seq1  TTCCAAAAAATTTGGACCC-CCCCTCAAGAAATCTTAAAACACAAATGAA  997
      |||| |||||||||||||| ||| ||||| ||||||||||||||||||||
seq2  TTCC-AAAAATTTGGACCCTCCCTTCAAG-AATCTTAAAACACAAATGAA  996

seq1  AG  999
      ||
seq2  AG  998

seq1: chr1_122982739_122983867
seq2: B6Ng01-103F11.g_66_1170 (reverse)

seq1  TTCACCACGGCCCCTTAGACACTGCACTTTACTCTTTCACAATCGGGAGA  50
      |||||||| | |||||||||||||||||||||||||   ||||| |||||
seq2  TTCACCACCG-CCCTTAGACACTGCACTTTACTCTT--CCAATC-GGAGA  46

seq1  GGCAA-AGTGTTGTTTGAAGTGTAACTGCAGTATGACCAGGTATGGAAAT  99
      |||||  ||||||     ||||| ||||||||||||||| |||| |||||
seq2  GGCAAGTGTGTTG-----AGTGT-ACTGCAGTATGACCA-GTAT-GAAAT  88

seq1  GGGAGGAACTAATACTAAGTAATGCAAGCCAGTGGATAAAAGCTGATTTG  149
       ||||||||| ||||| ||| |||||||||||||||| |||||||| |||
seq2  -GGAGGAACT-ATACT-AGT-ATGCAAGCCAGTGGAT-AAAGCTGA-TTG  132

seq1  AACACTAGCAACTTCTTTATTTTTTAACCTTGATGTCTGTGTGTGATGAA  199
      |||||||||||| || ||||||||||||||   |||||||||||||||||
seq2  AACACTAGCAAC-TCCTTATTTTTTAACCT--GTGTCTGTGTGTGATGAA  179

seq1  TTTGCGTGCGCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  249
      |||||||||||||   |||||||||||||||||||||||||||| ||| |
seq2  TTTGCGTGCGCTT---TGTGTGTGTGTGTGTGTGTGTGTGTGTG-GTGAG  225

seq1  TGTGTGTGTGTGTAAGTCAGAAGACAACCTATGTCCTCCTAGTTTGAGCC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTGTGTAAGTCAGAAGACAACCTATGTCCTCCTAGTTTGAGCC  275

seq1  AGTATCTTTTTGTGATGTCTAGCCTTGTAACATGCCAGGAAAGCCAGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTTTTGTGATGTCTAGCCTTGTAACATGCCAGGAAAGCCAGTCC  325

seq1  ACCAGCTTTGGGGGATTCTCTTGTCTGCCTCATGGCTGGTTATACAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTTGGGGGATTCTCTTGTCTGCCTCATGGCTGGTTATACAAATA  375

seq1  CTGTCCAGTGACTTATATGGGTCCCAGTGATCCGAACTCGGGTCCTCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTGACTTATATGGGTCCCAGTGATCCGAACTCGGGTCCTCACA  425

seq1  CTTACACAGCAAGCACTCTACCAACTGAGCCATCTCTCCAGGCCTCTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGCAAGCACTCTACCAACTGAGCCATCTCTCCAGGCCTCTGGC  475

seq1  AACTTCTGAAGGTGAGAGTGAAAGACAGGAGGATGTGAGGGCCCTGTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGAAGGTGAGAGTGAAAGACAGGAGGATGTGAGGGCCCTGTTGC  525

seq1  ATCAACCTTGCCCAGTTCTGGGCATTCGTGAGTGCCTTCTAGTCTGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCTTGCCCAGTTCTGGGCATTCGTGAGTGCCTTCTAGTCTGAGGG  575

seq1  TATTATTTGCCAACAGGCTTTCAGTGGTTCCAAACGAGCCCTGCGCTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGCCAACAGGCTTTCAGTGGTTCCAAACGAGCCCTGCGCTTAT  625

seq1  GGATTTTTTAGGTTGATGAAACCACACCTTGGAAAGGAAACAAGAATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTAGGTTGATGAAACCACACCTTGGAAAGGAAACAAGAATTTT  675

seq1  GAAGCCATTCACCAAAGACCAAACACCCAATTTACAGACAGCCAGGGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATTCACCAAAGACCAAACACCCAATTTACAGACAGCCAGGGCAA  725

seq1  GTCTTAGTGGGTTGTGTTTGCTCTTAAATAGTTGGCAGTGGAAATTACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTGGGTTGTGTTTGCTCTTAAATAGTTGGCAGTGGAAATTACAA  775

seq1  TTTTCTTCAAAACAGCATTGAAGAAACCTTTCTGTTTCCACTTACTCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAAAACAGCATTGAAGAAACCTTTCTGTTTCCACTTACTCCTA  825

seq1  CTCCTAAGTAGGACCTCACATACCGGCTTCTGTCCACCGTCCACCTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGTAGGACCTCACATACCGGCTTCTGTCCACCGTCCACCTTATA  875

seq1  CCCTAATAGGCAGACTCTTCTACCTCTGACCCCAGGAAATAGGAAGCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATAGGCAGACTCTTCTACCTCTGACCCCAGGAAATAGGAAGCAAG  925

seq1  TGTAGTCTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTCAAGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTCAAGGTT  975

seq1  GCTCTCTCTCTCTCAGGCTCCAGTAACTGGTGAGAGCTATCCCTAGCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTCTCTCAGGCTCCAGTAACTGGTGAGAGCTATCCCTAGCCAG  1025

seq1  AGAAGTTGGAGTGGGTGGAGATTAGGAGTGGGTTGGGATGTGGGGGTGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGAGTGGGTGGAGATTAGGAGTGGGTTGGGATGTGGGGGTGGG  1075

seq1  AATGGAGAAGCCTAGTGCTGCCTGGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  AATGGAGAAGCCTAGTGCTGCCTGGAATTC  1105