BAC Information

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BAC

Clone NameB6Ng01-104L01
Chromosome1 (Build37)
Map Location 65,871,679 - 66,011,788
singlet/doubletdoublet
Overlap geneCrygf
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L01.bB6Ng01-104L01.g
ACCDH912912DH912913
length4611,168
definitionDH912912|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L01, 5' end.DH912913|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,011,435 - 66,011,788)(65,871,679 - 65,872,883)
sequence
agactgggctaatatggaagaagcatagcttcctgtttcaatttctgatc
cctgaactaaaaacactgagtatctgaggaatagatagctcaaagtcagt
gcagaggggagagagtgttccagaacacaagctgtcagctttcagaagca
ggtcatggcagtaatgaaaagcttattaactaaaagcagatataatcaaa
ctataatatatattatagatatatacataaagaatatacacatataaatg
catattgacattttatacctctatgcctatatacatatatgtgtaatata
tacatgcatgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtg
atgagacatagtagttcactaaatttaggtctgttagcctctcatttatt
tacttaaggattattcatataatgtctgttcataataacagatttgggga
aataaatactg
gaattcagtagacaatactgtttccagctttaccagtatgaaaagagaaa
aattacattcaggttaacttaggaataaagttgaatttcctgtatataat
gaatctctattcgagaattttttttatttgagtctttattaaaacacgaa
aataaaatgtaccaacaaacaaaaagcccaactatgccttctttaaccat
ctattaatacataagccccttaattcagccaatggttatatttttttaat
tctatttaaagttaatttgccctaattcattctatccactttttctagaa
ttctctgccctcctggataattactttagtaaaagcttaaggaaacattg
tttgctgaaaatggctttcctatattagtggagaagcagaactgtgtggt
tacttaataattggaactaattgaactaaaatgcttaatttttcacatga
ggtacaaaagagcagcacaacggagttgaataaggagagcaattgaaagc
atcacacatggcacaccaacacacagttgctatggaaatatgccagtgct
ggtcactcatgggagcaatgtgagacattcatctgaattgctctttaatt
ttaatacaaacaaataaaagcagtcttcctttttcattttctattatcca
ccatggacacaataaataattaatttaagaaaatgctgcctgtgtgactt
tcctagggtggtcactatccagactgatggcagctaagaaatctcttgtt
cagaattctgggttatctgtctctgctttgtcttttacagctagttgctc
ttggcttcctatacagtcctgtcatcccttgtacatccttctagctcacg
tactattgtaccctgtgggaattatccttcagctacctggttcttgtgga
cagttagaagacactgccatccaaaccatagacaaactgtgctgtttatc
cactatttgaaagcagatgaaataaagagtatttcacacagtgaagctct
ccaccttagcacatttggcaagatgtttaacaactttgaatttcatgata
taatgaaacgccatcagttgaaagcattctttcatgcatctaattagccg
gactataaaagcagaccttatgacaaactaagaactccaaggctgttaag
tatatatcttgaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66011435_66011788
seq2: B6Ng01-104L01.b_41_396 (reverse)

seq1  CACACACACACACACACACAT--ACACACACACACACACACATGCATGTA  48
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACACACACACACACACACATGCATGTA  50

seq1  TATATTACACATATATGTATATAGGCATAGAGGTATAAAATGTCAATATG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACACATATATGTATATAGGCATAGAGGTATAAAATGTCAATATG  100

seq1  CATTTATATGTGTATATTCTTTATGTATATATCTATAATATATATTATAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATGTGTATATTCTTTATGTATATATCTATAATATATATTATAG  150

seq1  TTTGATTATATCTGCTTTTAGTTAATAAGCTTTTCATTACTGCCATGACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATATCTGCTTTTAGTTAATAAGCTTTTCATTACTGCCATGACC  200

seq1  TGCTTCTGAAAGCTGACAGCTTGTGTTCTGGAACACTCTCTCCCCTCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAAAGCTGACAGCTTGTGTTCTGGAACACTCTCTCCCCTCTGC  250

seq1  ACTGACTTTGAGCTATCTATTCCTCAGATACTCAGTGTTTTTAGTTCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTGAGCTATCTATTCCTCAGATACTCAGTGTTTTTAGTTCAGG  300

seq1  GATCAGAAATTGAAACAGGAAGCTATGCTTCTTCCATATTAGCCCAGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAATTGAAACAGGAAGCTATGCTTCTTCCATATTAGCCCAGTCT  350

seq1  GAATTC  354
      ||||||
seq2  GAATTC  356

seq1: chr1_65871679_65872883
seq2: B6Ng01-104L01.g_65_1232

seq1  GAATTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAGAAA  50

seq1  AATTACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATATAAT  100

seq1  GAATCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACACGAA  150

seq1  AATAAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAACCAT  200

seq1  CTATTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTTAAT  250

seq1  TCTATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTAGAA  300

seq1  TTCTCTGCCCTCCTGGATAATTACTTTAGTAAAAGCTTAAGGAAACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCCTCCTGGATAATTACTTTAGTAAAAGCTTAAGGAAACATTG  350

seq1  TTTGCTGAAAATGGCTTTCCTATATTAGTGGAGAAGCAGAACTGTGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAAATGGCTTTCCTATATTAGTGGAGAAGCAGAACTGTGTGGT  400

seq1  TACTTAATAATTGGAACTAATTGAACTAAAATGCTTAATTTTTCACATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATAATTGGAACTAATTGAACTAAAATGCTTAATTTTTCACATGA  450

seq1  GGTACAAAAGAGCAGCACAACGGAGTTGAATAAGGAGAGCAATTGAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAAAGAGCAGCACAACGGAGTTGAATAAGGAGAGCAATTGAAAGC  500

seq1  ATCACACATGGCACACCAACACACAGTTGCTATGGAAATATGCCAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACATGGCACACCAACACACAGTTGCTATGGAAATATGCCAGTGCT  550

seq1  GGTCACTCATGGGAGCAATGTGAGACATTCATCTGAATTGCTCTTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTCATGGGAGCAATGTGAGACATTCATCTGAATTGCTCTTTAATT  600

seq1  TTAATACAAACAAATAAAAGCAGTCTTCCTTTTTCATTTTCTATTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAAACAAATAAAAGCAGTCTTCCTTTTTCATTTTCTATTATCCA  650

seq1  CCATGGACACAATAAATAATTAATTTAAGAAAATGCTGCCTGTGTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGACACAATAAATAATTAATTTAAGAAAATGCTGCCTGTGTGACTT  700

seq1  TCCTAGGGTGGTCACTATCCAGACTGATGGCAGCTAAGAAATCTCTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGTGGTCACTATCCAGACTGATGGCAGCTAAGAAATCTCTTGTT  750

seq1  CAGAATTCTGGGTTATCTGTCTCTGCTTTGTCTTTTACAGCTAGTTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTGGGTTATCTGTCTCTGCTTTGTCTTTTACAGCTAGTTGCTC  800

seq1  TTGGCTTCCTATACAGTCCTGTCATCCCTTGTACATCCTTCTAGCTCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCTATACAGTCCTGTCATCCCTTGTACATCCTTCTAGCTCACG  850

seq1  TACTATTGTACCCTGTGGGAATTATCCTTCAGCTACCTGGTTCTTGTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTACCCTGTGGGAATTATCCTTCAGCTACCTGGTTCTTGTGGA  900

seq1  CAGTTAGAAAGACACTGCCATCCAAACCATAGACAAACTGTGCTGTTTAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAG-AAGACACTGCCATCCAAACCATAGACAAACTGTGCTGTTTAT  949

seq1  CCAACTATTTGAAAGCAGATGAAATAAAGAGTAATTTCAACACAGTGGAA  1000
      || ||||||||||||||||||||||||||||| ||||| ||||||| |||
seq2  CC-ACTATTTGAAAGCAGATGAAATAAAGAGT-ATTTC-ACACAGT-GAA  995

seq1  GCTCTCCACCTTAGCACATTTGGCAAAGATGTTTACACAACTTTTGAATT  1050
      |||||||||||||||||||||||| |||||||||| ||||| ||||||||
seq2  GCTCTCCACCTTAGCACATTTGGC-AAGATGTTTA-ACAAC-TTTGAATT  1042

seq1  TCATGATATAAATTGAAACGCCCAATTCAAGTTTAAAAGCATTCTTTTCC  1100
      |||||||||||  |||||||||    |||   || ||||||||||||  |
seq2  TCATGATATAA--TGAAACGCC---ATCA--GTTGAAAGCATTCTTT--C  1083

seq1  ATGCATCTTATATACCCCAGAACTAATAAAAGCAGAACACCTTAGTGACA  1150
      |||||||| || || ||  | ||| ||||||||||   |||||| |||||
seq2  ATGCATCTAAT-TAGCC--GGACT-ATAAAAGCAG---ACCTTA-TGACA  1125

seq1  AAACCTAAGAGACTCACAAGGGGCCTGCTTAAGGTTATATAATCTTAGAG  1200
      ||  |||||| |||| |||||   ||| |||||  ||||| ||||| |||
seq2  AA--CTAAGA-ACTC-CAAGG---CTG-TTAAG--TATAT-ATCTT-GAG  1163

seq1  GAAGA  1205
      |||||
seq2  GAAGA  1168