BAC Information

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BAC

Clone NameB6Ng01-106L15
Chromosome1 (Build37)
Map Location 97,350,912 - 97,541,326
singlet/doubletdoublet
Overlap geneLOC100041686, Rnu7-ps2, St8sia4
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L15.bB6Ng01-106L15.g
ACCDH914383DH914384
length1,1771,102
definitionDH914383|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L15, 5' end.DH914384|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,540,123 - 97,541,326)(97,350,912 - 97,352,015)
sequence
gaattcaaacaaaaacagatagtataaagaaaataatttatatttaataa
ttcagtctgcatttaggagtataatgaaggtttctaggacaaacatagca
taaagtgctcagcatagttattcaataaatagatcgtatcctttagatta
cttctgactaatacacagtacatttatattgtgatcatcctaaatataac
tcatacacacagaagatgccaatatttatagttaactgtcccattgtgct
atacaggataaccactaacaggaaataacagtttaaaggatcatcatttg
agaacaaagaactctggattctactgctggcacagcagttaaatgtagtg
taactcttaacaaaggagacaatgaacattgggattcattttctcgactc
acctaatgaggaagttgaactcaatggtctcctgaactcatttctgactc
tcaaaccctgtgatttcctatgattcatggatgtctttgcaacaaggccc
gtgggcttacattgtttagaaatttttccttcttgttaccacagtttata
gccaaaaatttttccccatcagcaaagttgtggaaataacacatattgtt
atggtccctaatatggttcttgtttctgttggttcagaaatgttgccttc
cttctgatgatcgcctgacagctgcctaagatgtaaaatcaggatttgat
cacatctgtttagatgaagaaaaacaatcccagcattcaatgattcatgg
aggtgtgatgtaaatgagatgtgatcaagttctagggagttcatagatta
tatgaaaagtgtaaagaaaaaccagtaactacaagaattacacgaaggaa
gagaagtagttgtacaaaatcatcactcaggtggctttagggaaaagacc
ttggcacttttcttgggggtataacctagttactgtatctgctactttac
tggcaagaattaaaattctggaattataaaatgcagttgtgaaataccaa
ttgactcatctatactagaacgtaaaaatatgaattaatagccagtatgg
tgtcaataatactgtaagtattatttgaaaggactgcagatcatattttt
gaaaaattcttaatataagtagaatgttcagttttaagaccatgtccggg
tgggtgcattaagaatagattcctctg
gaattcaggaaaccaaatccaaagggctattgttttctatatttaaacct
ctgttcttgtttcaagcttctgtatacaagttaaagaggatttttctgga
atgcattcaaagagccggagccagaaacaagaaatcccaaatggaattct
tagtaagtttccagatagcttacagtttgagtagaacaagtttggaatgg
gtgttttaaacatttcaattcagttcacttagtttcaacaaacacaggaa
ggtactgctttaggacataagagcaaaaacaaaagatgaacgtttgttgt
caaaggaattgggaatcacttgatttaggtgagtgcacagaaaaaaaaaa
ttgtgtatagcaaatcctaagtattttgtcactagacattatagggtgtg
atttatagtgatattaacttgcttctatagtaggtgaccattcccataat
tatcaaattatcactatataatacaattttataatatatagtattgtata
actttatataaatgttatataattagaaacataataaccctgagtagagt
aaaggaaaatcataggtaaagagatcaagtagggagactgtgtgagaaga
actatgttagatttaattcagactctggtgtgtgcagaactttcacctgt
cccaggagaccatgagacattgtatcaatagtcagtaaatgtgtatcagt
taattggttagtgaattataaatgaataaaacaacataaacctaggaatt
catacatgacacattagagaaagaggaggggcaaccctgtgacctgattg
tctcaataaaactttggcatagccattaggagtacattatttctgtttct
ttgttcagtagcagaaacttatttattttgcatttacactgacattagaa
ctctgttttgcagattcattgggagtggtattgattcactcttttcacta
accaagatattgacatgagcattttgtttccctgatgcatttgctactat
ctttagatttttttctttagagtgaagcccaacagcatccctggttctct
tggtctctcatcctggagccagatcttgaagacagattgggtggtgtgca
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97540123_97541326
seq2: B6Ng01-106L15.b_46_1222 (reverse)

seq1  CAGAGGAAATCTATTTACTTTACATGCACACACACAGAGACATGAGATCA  50
      |||||| ||||||||  |||   |||||| ||| |   |||||  | || 
seq2  CAGAGG-AATCTATT--CTT--AATGCACCCACCC--GGACAT--GGTC-  40

seq1  TAAAAACTGAAAACATTCTAACTAATAATAAGGAATTGTTTCAAAAATAT  100
      | |||||||  |||||||| ||| ||| ||| ||||| ||||||||||||
seq2  TTAAAACTG--AACATTCT-ACTTATATTAA-GAATT-TTTCAAAAATAT  85

seq1  GATCCTTGCAAGTCCTTTCCAAATAATTACTTAACAGTAATTATTTGACA  150
      ||||  ||| |||||||| ||||||| ||||| ||||| |||| ||||||
seq2  GATC--TGC-AGTCCTTT-CAAATAA-TACTT-ACAGT-ATTA-TTGACA  127

seq1  CCATACTGGCTATTAATTCATATTTTTACGTTTCTAGTAATAGATGAGTC  200
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  CCATACTGGCTATTAATTCATATTTTTACG-TTCTAGT-ATAGATGAGTC  175

seq1  AATTGGTATTTCACAACTGCATTTTATAATTCCAGGAATTTTAATTCTTG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTGGTATTTCACAACTGCATTTTATAATTCCA-GAATTTTAATTCTTG  224

seq1  CCAGTAAAGTAGCAGATACAGTAACTAGGTTATACCCCCAAGAAAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAAGTAGCAGATACAGTAACTAGGTTATACCCCCAAGAAAAGTGC  274

seq1  CAAGGTCTTTTCCCTAAAGCCACCCTGAGTGATGATTTTGTACAACTACT  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGGTCTTTTCCCTAAAGCCA-CCTGAGTGATGATTTTGTACAACTACT  323

seq1  TCTCTTCCTTCGTGTAATTCTTGTAGTTACTGGTTTTTCTTTACACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTCGTGTAATTCTTGTAGTTACTGGTTTTTCTTTACACTTTT  373

seq1  CATATAATCTATGAACTCCCTAGAACTTGATCACATCTCATTTACATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCTATGAACTCCCTAGAACTTGATCACATCTCATTTACATCAC  423

seq1  ACCTCCATGAATCATTGAATGCTGGGATTGTTTTTCTTCATCTAAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGAATCATTGAATGCTGGGATTGTTTTTCTTCATCTAAACAGA  473

seq1  TGTGATCAAATCCTGATTTTACATCTTAGGCAGCTGTCAGGCGATCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAAATCCTGATTTTACATCTTAGGCAGCTGTCAGGCGATCATCA  523

seq1  GAAGGAAGGCAACATTTCTGAACCAACAGAAACAAGAACCATATTAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGCAACATTTCTGAACCAACAGAAACAAGAACCATATTAGGGA  573

seq1  CCATAACAATATGTGTTATTTCCACAACTTTGCTGATGGGGAAAAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACAATATGTGTTATTTCCACAACTTTGCTGATGGGGAAAAATTTT  623

seq1  TGGCTATAAACTGTGGTAACAAGAAGGAAAAATTTCTAAACAATGTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATAAACTGTGGTAACAAGAAGGAAAAATTTCTAAACAATGTAAGC  673

seq1  CCACGGGCCTTGTTGCAAAGACATCCATGAATCATAGGAAATCACAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGCCTTGTTGCAAAGACATCCATGAATCATAGGAAATCACAGGGT  723

seq1  TTGAGAGTCAGAAATGAGTTCAGGAGACCATTGAGTTCAACTTCCTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCAGAAATGAGTTCAGGAGACCATTGAGTTCAACTTCCTCATT  773

seq1  AGGTGAGTCGAGAAAATGAATCCCAATGTTCATTGTCTCCTTTGTTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTCGAGAAAATGAATCCCAATGTTCATTGTCTCCTTTGTTAAGA  823

seq1  GTTACACTACATTTAACTGCTGTGCCAGCAGTAGAATCCAGAGTTCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTACATTTAACTGCTGTGCCAGCAGTAGAATCCAGAGTTCTTTG  873

seq1  TTCTCAAATGATGATCCTTTAAACTGTTATTTCCTGTTAGTGGTTATCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATGATGATCCTTTAAACTGTTATTTCCTGTTAGTGGTTATCCT  923

seq1  GTATAGCACAATGGGACAGTTAACTATAAATATTGGCATCTTCTGTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCACAATGGGACAGTTAACTATAAATATTGGCATCTTCTGTGTGT  973

seq1  ATGAGTTATATTTAGGATGATCACAATATAAATGTACTGTGTATTAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTATATTTAGGATGATCACAATATAAATGTACTGTGTATTAGTCA  1023

seq1  GAAGTAATCTAAAGGATACGATCTATTTATTGAATAACTATGCTGAGCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATCTAAAGGATACGATCTATTTATTGAATAACTATGCTGAGCAC  1073

seq1  TTTATGCTATGTTTGTCCTAGAAACCTTCATTATACTCCTAAATGCAGAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTATGTTTGTCCTAGAAACCTTCATTATACTCCTAAATGCAGAC  1123

seq1  TGAATTATTAAATATAAATTATTTTCTTTATACTATCTGTTTTTGTTTGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTAAATATAAATTATTTTCTTTATACTATCTGTTTTTGTTTGA  1173

seq1  ATTC  1204
      ||||
seq2  ATTC  1177

seq1: chr1_97350912_97352015
seq2: B6Ng01-106L15.g_69_1170

seq1  GAATTCAGGAAACCAAATCCAAAGGGCTATTGTTTTCTATATTTAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAACCAAATCCAAAGGGCTATTGTTTTCTATATTTAAACCT  50

seq1  CTGTTCTTGTTTCAAGCTTCTGTATACAAGTTAAAGAGGATTTTTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGTTTCAAGCTTCTGTATACAAGTTAAAGAGGATTTTTCTGGA  100

seq1  ATGCATTCAAAGAGCCGGAGCCAGAAACAAGAAATCCCAAATGGAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCAAAGAGCCGGAGCCAGAAACAAGAAATCCCAAATGGAATTCT  150

seq1  TAGTAAGTTTCCAGATAGCTTACAGTTTGAGTAGAACAAGTTTGGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTTCCAGATAGCTTACAGTTTGAGTAGAACAAGTTTGGAATGG  200

seq1  GTGTTTTAAACATTTCAATTCAGTTCACTTAGTTTCAACAAACACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAAACATTTCAATTCAGTTCACTTAGTTTCAACAAACACAGGAA  250

seq1  GGTACTGCTTTAGGACATAAGAGCAAAAACAAAAGATGAACGTTTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCTTTAGGACATAAGAGCAAAAACAAAAGATGAACGTTTGTTGT  300

seq1  CAAAGGAATTGGGAATCACTTGATTTAGGTGAGTGCACAGAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATTGGGAATCACTTGATTTAGGTGAGTGCACAGAAAAAAAAAA  350

seq1  TTGTGTATAGCAAATCCTAAGTATTTTGTCACTAGACATTATAGGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATAGCAAATCCTAAGTATTTTGTCACTAGACATTATAGGGTGTG  400

seq1  ATTTATAGTGATATTAACTTGCTTCTATAGTAGGTGACCATTCCCATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTGATATTAACTTGCTTCTATAGTAGGTGACCATTCCCATAAT  450

seq1  TATCAAATTATCACTATATAATACAATTTTATAATATATAGTATTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTATCACTATATAATACAATTTTATAATATATAGTATTGTATA  500

seq1  ACTTTATATAAATGTTATATAATTAGAAACATAATAACCCTGAGTAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATAAATGTTATATAATTAGAAACATAATAACCCTGAGTAGAGT  550

seq1  AAAGGAAAATCATAGGTAAAGAGATCAAGTAGGGAGACTGTGTGAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATCATAGGTAAAGAGATCAAGTAGGGAGACTGTGTGAGAAGA  600

seq1  ACTATGTTAGATTTAATTCAGACTCTGGTGTGTGCAGAACTTTCACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTAGATTTAATTCAGACTCTGGTGTGTGCAGAACTTTCACCTGT  650

seq1  CCCAGGAGACCATGAGACATTGTATCAATAGTCAGTAAATGTGTATCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGACCATGAGACATTGTATCAATAGTCAGTAAATGTGTATCAGT  700

seq1  TAATTGGTTAGTGAATTATAAATGAATAAAACAACATAAACCTAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTTAGTGAATTATAAATGAATAAAACAACATAAACCTAGGAATT  750

seq1  CATACATGACACATTAGAGAAAGAGGAGGGGCAACCCTGTGACCTGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGACACATTAGAGAAAGAGGAGGGGCAACCCTGTGACCTGATTG  800

seq1  TCTCAATAAAACTTTGGCATAGCCATTAGGAGTACATTATTTCTGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAAAACTTTGGCATAGCCATTAGGAGTACATTATTTCTGTTTCT  850

seq1  TTGTTCAGTAGCAGAAACTTATTTATTTTGCATTTACACTGACATTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTAGCAGAAACTTATTTATTTTGCATTTACACTGACATTAGAA  900

seq1  CTCTGTTTTGCAGATTCATTGGGAGTGGTATTGATTCACTCTTTTCACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTGCAGATTCATTGGGAGTGGTATTGATTCACTCTTTTCACTA  950

seq1  ACCAAGATATTTGACATGAGCATTTTGTTTTCCCTGATGCATTTGCTACT  1000
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  ACCAAGATA-TTGACATGAGCATTTTG-TTTCCCTGATGCATTTGCTACT  998

seq1  ATCTTTAGATTTTTTTCTTTAGAAGTGAAGCCCAACAGCATCCCTGG-TC  1049
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATCTTTAGATTTTTTTCTTTAG-AGTGAAGCCCAACAGCATCCCTGGTTC  1047

seq1  TCCTGGTCTCTCATCCT-GAGCCCAAGATC-TGAAGACAGATTGGTGTGT  1097
      || |||||||||||||| |||||  ||||| ||||||||||||||   ||
seq2  TCTTGGTCTCTCATCCTGGAGCC--AGATCTTGAAGACAGATTGGGTGGT  1095

seq1  GTGCATG  1104
      |||||||
seq2  GTGCATG  1102