BAC Information

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BAC

Clone NameB6Ng01-106O02
Chromosome1 (Build37)
Map Location 67,554,045 - 67,717,538
singlet/doubletdoublet
Overlap geneKif22-ps
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O02.bB6Ng01-106O02.g
ACCDH914497DH914498
length1,1021,109
definitionDH914497|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O02, 5' end.DH914498|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,554,045 - 67,555,153)(67,716,421 - 67,717,538)
sequence
gaattcatttgtctaagtagaggactataggacatttctgtaattttaaa
cctgttgatataagttacacaaatcagtaaaaccgtctggatgttacttt
cataaaatgtggtgtagaagagaatatggaccatcattgccaagtttgta
ttagatcacccttctggatttgtcaaacccaaggccataacacatctctt
gagagatgagtgagatattagatgttgaaaaagtgtgattatataactag
gaaaatattacatcataggtgtggtaactttagagtttaatatgctaata
aatcctaaccatgagggacaaatgtataacattttctcaatgtattacca
gtgcaatgctttccttgtagtaatagttaagtacgcttaattttgagggg
accctatgaattttgttgccatagctttggactgctctccttccttcact
ctggctctctgctactttgcttccctccatgggcttgtctaccttgacac
tctcatttactggaactggcactaccctgaatcctacttcatatgttgac
ggcctcctcttttgcttatagagatcattatgcacacatacaatgttgtt
tagtgtattgaatactttcaaatgtaagaaacatattttacagatgtaaa
attttaattttggaaatacttgaacatttttttcctccaatgtgtttgga
tcatatggacccactctccccactcctccaagacccacctctctttttaa
ttacccaactatgccctctgttaaaaaatatcatttcctatatgtgtaat
ccgtacactcttggatgtgtgacctttattggagggtgttcagctcacct
ggagctttactctcgaatgaaattgactctccaagcagctatcagttgcc
aatagcttcacagatggggtggaacttgaagcccacatcccttctccatt
cttgaatttgtctagctgagctgcacatgttttgtgtaccttgtcttaat
tctgtgggattcatttgtcacttgcttcactgtggtctgaaaacagcatt
tacctcgtagttcaaatcctgtgggctctccaatctttcccattctcttt
ta
gaattcatttgaacacagcttctttcctaggaaatccaattactgaaaga
ctaaaaatgtattacagtaataaagccttcagtgtaatctagttatatga
cataattaatactaactatgatgtgatagtttacatgatcccatttacac
tgttgaggtcttttaaggaacatatttaagagagaaaaatgtttgtgttc
tgttaaaattatatgtgttgaaactaagaagattgtagtgggaaatatac
ttttaccctgctgaggaaaagaactaggttctgtcccattcatatgagag
tggggacagagtgggcgaagacagaaatatcaagtaaattgtaggtattc
tttaagatggtctgcaagacctagattgctccacctttgtcacatgtctg
tggctcacttctaacagatgtattagagtacggtgatggggctggtgaga
tggctcagcgggtaagagcactgactactcttccgaaggtcctgagttca
aatcccagcaaccacatggtggcttgcaaccactcgtaatgaaatctgct
gccctcttctggtttgtctgaaataaataaatctttaaaaaaaaatcata
aactttagagtacagtgatgagatgtttcatctataattgtagaaagcct
atgtttccattacaatcatctacttttgcttcttctgctcccaattccaa
cctcaaactccacttgtcatcttagggaagtcagctgtcatatcagaaac
aaccctatagagaaagttatacagcactgaagagataactctggccagta
gccactaaaggctgccaatgacacaagtgaccttggaaagaggtccttta
tgttgtggctactgcatcctagaaagcttccaaggcttttgagtcattaa
aacccaagcaccaacacagccatgtccagataactgatttataaaattct
gaaaaacaaagttatatttattaggctatttgaaaggttgctagattatt
tggaaacataaaaatacaaattcatgataggatgtctagttaattttgcc
tctttaataattatgcaaacttttttcctggcactccatacaggcaacat
tttatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67554045_67555153
seq2: B6Ng01-106O02.b_45_1146

seq1  GAATTCATTTGTCTAAGTAGAGGACTATAGGACATTTCTGTAATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTCTAAGTAGAGGACTATAGGACATTTCTGTAATTTTAAA  50

seq1  CCTGTTGATATAAGTTACACAAATCAGTAAAACCGTCTGGATGTTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGATATAAGTTACACAAATCAGTAAAACCGTCTGGATGTTACTTT  100

seq1  CATAAAATGTGGTGTAGAAGAGAATATGGACCATCATTGCCAAGTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATGTGGTGTAGAAGAGAATATGGACCATCATTGCCAAGTTTGTA  150

seq1  TTAGATCACCCTTCTGGATTTGTCAAACCCAAGGCCATAACACATCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCACCCTTCTGGATTTGTCAAACCCAAGGCCATAACACATCTCTT  200

seq1  GAGAGATGAGTGAGATATTAGATGTTGAAAAAGTGTGATTATATAACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAGTGAGATATTAGATGTTGAAAAAGTGTGATTATATAACTAG  250

seq1  GAAAATATTACATCATAGGTGTGGTAACTTTAGAGTTTAATATGCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTACATCATAGGTGTGGTAACTTTAGAGTTTAATATGCTAATA  300

seq1  AATCCTAACCATGAGGGACAAATGTATAACATTTTCTCAATGTATTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACCATGAGGGACAAATGTATAACATTTTCTCAATGTATTACCA  350

seq1  GTGCAATGCTTTCCTTGTAGTAATAGTTAAGTACGCTTAATTTTGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGCTTTCCTTGTAGTAATAGTTAAGTACGCTTAATTTTGAGGGG  400

seq1  ACCCTATGAATTTTGTTGCCATAGCTTTGGACTGCTCTCCTTCCTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATGAATTTTGTTGCCATAGCTTTGGACTGCTCTCCTTCCTTCACT  450

seq1  CTGGCTCTCTGCTACTTTGCTTCCCTCCATGGGCTTGTCTACCTTGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTCTGCTACTTTGCTTCCCTCCATGGGCTTGTCTACCTTGACAC  500

seq1  TCTCATTTACTGGAACTGGCACTACCCTGAATCCTACTTCATATGTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTACTGGAACTGGCACTACCCTGAATCCTACTTCATATGTTGAC  550

seq1  GGCCTCCTCTTTTGCTTATAGAGATCATTATGCACACATACAATGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCTTTTGCTTATAGAGATCATTATGCACACATACAATGTTGTT  600

seq1  TAGTGTATTGAATACTTTCAAATGTAAGAAACATATTTTACAGATGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATTGAATACTTTCAAATGTAAGAAACATATTTTACAGATGTAAA  650

seq1  ATTTTAATTTTGGAAATACTTGAACATTTTTTTCCTCCAATGTGTTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTGGAAATACTTGAACATTTTTTTCCTCCAATGTGTTTGGA  700

seq1  TCATATGGACCCACTCTCCCCACTCCTCCAAGACCCACCTCTCTTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGACCCACTCTCCCCACTCCTCCAAGACCCACCTCTCTTTTTAA  750

seq1  TTACCCAACTATGCCCTCTGTTAAAAAATATCATTTCCTATATGTGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAACTATGCCCTCTGTTAAAAAATATCATTTCCTATATGTGTAAT  800

seq1  CCGTACACTCTTGGATGTGTGACCTTTATTGGAGGGTGTTCAGCTCACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACACTCTTGGATGTGTGACCTTTATTGGAGGGTGTTCAGCTCACCT  850

seq1  GGAGCTTTACTCTCGAATGAAATTGACTCTCCAAGCAGCTATCAGTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTACTCTCGAATGAAATTGACTCTCCAAGCAGCTATCAGTTGCC  900

seq1  AATAGCTTCACAGATGGGGTGGAACTTGAAGCCCACATCCCTTCTCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTCACAGATGGGGTGGAACTTGAAGCCCACATCCCTTCTCCATT  950

seq1  CTTGAATTTTGTCTAGCTTGAGCTTGCACATGTTTTGTGTACCTTGTCTT  1000
      |||||| |||||||||| ||||| ||||||||||||||||||||||||||
seq2  CTTGAA-TTTGTCTAGC-TGAGC-TGCACATGTTTTGTGTACCTTGTCTT  997

seq1  AATTTCTGT-GGATTCATTTGTTCACTTGCTTCACTGTGTCCTGAAAACA  1049
      || |||||| ||||||||||| |||||||||||||||||  |||||||||
seq2  AA-TTCTGTGGGATTCATTTG-TCACTTGCTTCACTGTGGTCTGAAAACA  1045

seq1  GCATTTA-CTCGTAGTTTTCCACTTCCTGT-GGCTCTCACAATCTTTCCA  1097
      ||||||| |||||||||   ||  |||||| ||||||| |||||||||| 
seq2  GCATTTACCTCGTAGTT---CAAATCCTGTGGGCTCTC-CAATCTTTCC-  1090

seq1  CATTCTCTTTTA  1109
      ||||||||||||
seq2  CATTCTCTTTTA  1102

seq1: chr1_67716421_67717538
seq2: B6Ng01-106O02.g_68_1176 (reverse)

seq1  TTTGATAAAATGTTGCTGGTTATGGGAAGTG-CAGGAAAAAAGTTCTGCA  49
      ||||||||||||||||  | |||||  |||| ||||||||||||| ||||
seq2  TTTGATAAAATGTTGCCTG-TATGG--AGTGCCAGGAAAAAAGTT-TGCA  46

seq1  TTAATTTATAAAAGAGCAAAAATTTACTTAGACAT-CTATCATTGAATTT  98
      |  | |||| ||||||  |||||| || ||||||| |||||| |||||||
seq2  T--AATTATTAAAGAGGCAAAATTAAC-TAGACATCCTATCA-TGAATTT  92

seq1  GTATTTTTATGTTT-CAAATAATCTAGCAACCTTTCAAATAGCCTAATTA  147
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GTATTTTTATGTTTCCAAATAATCTAGCAACCTTTCAAATAGCCTAA-TA  141

seq1  AATATAACTTTTGTTTTTCAGAATTTTTATAAATCAGTTATCTGGACATG  197
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  AATATAAC-TTTGTTTTTCAGAA-TTTTATAAATCAGTTATCTGGACATG  189

seq1  GCTGTGTTGGTGCTTTGGGTTTTAATGACTCAAAAGCCTTGGAAGCTTTC  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGGTGC-TTGGGTTTTAATGACTCAAAAGCCTTGGAAGCTTTC  238

seq1  TAGGATGCAGTAGCCACAACATAAAGGACCTCTTTCCAAGGTCACTTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCAGTAGCCACAACATAAAGGACCTCTTTCCAAGGTCACTTGTG  288

seq1  TCATTGGCAGCCTTTAGTGGCTACTGGCCAGAGTTATCTCTTCAGTGCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCAGCCTTTAGTGGCTACTGGCCAGAGTTATCTCTTCAGTGCTG  338

seq1  TATAACTTTCTCTATAGGGTTGTTTCTGATATGACAGCTGACTTCCCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTCTCTATAGGGTTGTTTCTGATATGACAGCTGACTTCCCTAA  388

seq1  GATGACAAGTGGAGTTTGAGGTTGGAATTGGGAGCAGAAGAAGCAAAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGTGGAGTTTGAGGTTGGAATTGGGAGCAGAAGAAGCAAAAGT  438

seq1  AGATGATTGTAATGGAAACATAGGCTTTCTACAATTATAGATGAAACATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTGTAATGGAAACATAGGCTTTCTACAATTATAGATGAAACATC  488

seq1  TCATCACTGTACTCTAAAGTTTATGATTTTTTTTTAAAGATTTATTTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTGTACTCTAAAGTTTATGATTTTTTTTTAAAGATTTATTTATT  538

seq1  TCAGACAAACCAGAAGAGGGCAGCAGATTTCATTACGAGTGGTTGCAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAACCAGAAGAGGGCAGCAGATTTCATTACGAGTGGTTGCAAGC  588

seq1  CACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGTAGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGTAGTCA  638

seq1  GTGCTCTTACCCGCTGAGCCATCTCACCAGCCCCATCACCGTACTCTAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTACCCGCTGAGCCATCTCACCAGCCCCATCACCGTACTCTAAT  688

seq1  ACATCTGTTAGAAGTGAGCCACAGACATGTGACAAAGGTGGAGCAATCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTTAGAAGTGAGCCACAGACATGTGACAAAGGTGGAGCAATCTA  738

seq1  GGTCTTGCAGACCATCTTAAAGAATACCTACAATTTACTTGATATTTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCAGACCATCTTAAAGAATACCTACAATTTACTTGATATTTCTG  788

seq1  TCTTCGCCCACTCTGTCCCCACTCTCATATGAATGGGACAGAACCTAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCCCACTCTGTCCCCACTCTCATATGAATGGGACAGAACCTAGTT  838

seq1  CTTTTCCTCAGCAGGGTAAAAGTATATTTCCCACTACAATCTTCTTAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCAGCAGGGTAAAAGTATATTTCCCACTACAATCTTCTTAGTT  888

seq1  TCAACACATATAATTTTAACAGAACACAAACATTTTTCTCTCTTAAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACATATAATTTTAACAGAACACAAACATTTTTCTCTCTTAAATAT  938

seq1  GTTCCTTAAAAGACCTCAACAGTGTAAATGGGATCATGTAAACTATCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAAAAGACCTCAACAGTGTAAATGGGATCATGTAAACTATCACA  988

seq1  TCATAGTTAGTATTAATTATGTCATATAACTAGATTACACTGAAGGCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTAGTATTAATTATGTCATATAACTAGATTACACTGAAGGCTTT  1038

seq1  ATTACTGTAATACATTTTTAGTCTTTCAGTAATTGGATTTCCTAGGAAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTAATACATTTTTAGTCTTTCAGTAATTGGATTTCCTAGGAAAG  1088

seq1  AAGCTGTGTTCAAATGAATTC  1118
      |||||||||||||||||||||
seq2  AAGCTGTGTTCAAATGAATTC  1109