BAC Information

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BAC

Clone NameB6Ng01-107F05
Chromosome1 (Build37)
Map Location 6,376,605 - 6,377,782
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107F05.bB6Ng01-107F05.g
ACCDH914823DH914824
length1,1641,163
definitionDH914823|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F05, 5' end.DH914824|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctacactggagcattgatcaccctcaagcctaagggtctctc
ttcccactgatgtagaaaaggccatcttctgccacatatgcacctccatg
gtactgcaagccccctcaactccttcaatcccttgtcaaactcctcgaga
tagcatatttgaatcagaagtttggctttttggttagattggccagccag
ccagtgagtactcatggtttgtctattcattcccttcagtgatcgggtta
taggttggaacatcaacaatactcattttctttgggaactggagatttga
acttaggttttaatgcttgcacagtaaatgttctgacccattcagctcca
aacaacttgtttgtgatgatttccaaaatgctggtgctcactgtcacaca
gaagcaatgcttggatccctgaatgctgccttctttcccttctcacactc
gtgctctgagcttacacactgctaggaaaggtagcttttctacaagaagg
gttctcacacattcctcacctcctaggatataaagaactatctcgtaccc
tgggactccatcaacattgctcaggcttcatgaactctgattcatctaga
ggggacaaatgtgcccttcatgcctcattcagagcacatgtggtttataa
agaactcaaaacatcatatgtctaaatgtacaacacatagggccagtgag
agggcggagtgagaaaggatgcttgctgtcaaacctggtggtctaaattg
gatatttgggacccacatgctagatggagagaaccaagccctgcaatttg
tcttctgaccacatacatcctatgttacataggccatcaaacacaaaata
aataagtgcaaatccagggggttggcgttgtttcttttgttttgcaagaa
aaagtaaatatacaactgacaacagaccccaaggcttaaatattcatgaa
atttgttttcttctctattacatgtatgtgtgtgctgctagaggatttat
aaactgccttttggatgacgtgtttagtgagtagcagtgagtctgaagtg
aagcctcttcttaggtgtgttcattccagctaaggtcatatagcagtcat
ctcatgatgacctcagagaatctcagcttgcctcccctgcctgctgtctg
gagaagaaattata
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcatcatccttaattatcagggaaatgcaaatcaacatatgggcacagg
ggaaaaattcctggacaggacaccaatgccgtgtgctgtaagatcaagaa
ttgacaaataggacctcataaaattgcaaagcttctataaggcaaaggac
actgtcactaagacaaaaaggcaaccaacagattgggaaaagatctttac
caatccaatatgatatagatggctaatatccaatatatacaaagaactca
agaagttctttgaactccatagaacaaaatgaccatattaaaaattcggg
tacagagctaaacaaagaattttcaactgaggactactgaatggataaga
agcacctgaaaaaaatattcaacatcctcagtcatcagggaaatggaaat
caaaacaactctgagattccacctcacaccagtcagaatggctaagataa
aaaactcaggtgacagcatatgctgtcaaggatgtggaggaagaggaaca
ctcctccattgctggtggaattgcaagctgctacaaccactctggaaatc
agtctggcggttcctcagaaaattggtcatagtactaccataagattcag
caatacccctcctggacatatacacagaagatgctccaacatgtattaag
gacacatgctccactatgttcatagcagccttatatataatagccagaag
ctggaaagaacccagatgtctctcaacagaggaatggatacagaaaatgt
ggtacatttacataatggagtactactcagcaattaaaaacaatgaattt
atgaaattcttaggccaatggatggatctggaggatatcatcctgagtaa
ggtaacccatcacaaaggaactcacatgatgtgcactctctgataaggtg
atattagcccagaagctcggaatccccagatacatctgcaaacactggac
tcaagggaggaagaccaagtgtgtatctggatccttctagacggaaacaa
aatacccatggatgagtccagaataagttaggagcaaagacggaagcatg
atcctagaactggcccacctggggatctatcatatacaactattaaaacc
agaaccttatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6376605_6377782
seq2: B6Ng01-107F05.b_45_1208

seq1  GAATTCCCCTACACTGGAGCATTGATCACCCTCAAGCCTAAGGGTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACACTGGAGCATTGATCACCCTCAAGCCTAAGGGTCTCTC  50

seq1  TTCCCACTGATGTAGAAAAGGCCATCTTCTGCCACATATGCACCTCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGATGTAGAAAAGGCCATCTTCTGCCACATATGCACCTCCATG  100

seq1  GTACTGCAAGCCCCCTCAACTCCTTCAATCCCTTGTCAAACTCCTCGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAAGCCCCCTCAACTCCTTCAATCCCTTGTCAAACTCCTCGAGA  150

seq1  TAGCATATTTGAATCAGAAGTTTGGCTTTTTGGTTAGATTGGCCAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTTGAATCAGAAGTTTGGCTTTTTGGTTAGATTGGCCAGCCAG  200

seq1  CCAGTGAGTACTCATGGTTTGTCTATTCATTCCCTTCAGTGATCGGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGTACTCATGGTTTGTCTATTCATTCCCTTCAGTGATCGGGTTA  250

seq1  TAGGTTGGAACATCAACAATACTCATTTTCTTTGGGAACTGGAGATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGAACATCAACAATACTCATTTTCTTTGGGAACTGGAGATTTGA  300

seq1  ACTTAGGTTTTAATGCTTGCACAGTAAATGTTCTGACCCATTCAGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTTTTAATGCTTGCACAGTAAATGTTCTGACCCATTCAGCTCCA  350

seq1  AACAACTTGTTTGTGATGATTTCCAAAATGCTGGTGCTCACTGTCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTGTTTGTGATGATTTCCAAAATGCTGGTGCTCACTGTCACACA  400

seq1  GAAGCAATGCTTGGATCCCTGAATGCTGCCTTCTTTCCCTTCTCACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATGCTTGGATCCCTGAATGCTGCCTTCTTTCCCTTCTCACACTC  450

seq1  GTGCTCTGAGCTTACACACTGCTAGGAAAGGTAGCTTTTCTACAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGAGCTTACACACTGCTAGGAAAGGTAGCTTTTCTACAAGAAGG  500

seq1  GTTCTCACACATTCCTCACCTCCTAGGATATAAAGAACTATCTCGTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACACATTCCTCACCTCCTAGGATATAAAGAACTATCTCGTACCC  550

seq1  TGGGACTCCATCAACATTGCTCAGGCTTCATGAACTCTGATTCATCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCATCAACATTGCTCAGGCTTCATGAACTCTGATTCATCTAGA  600

seq1  GGGGACAAATGTGCCCTTCATGCCTCATTCAGAGCACATGTGGTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAATGTGCCCTTCATGCCTCATTCAGAGCACATGTGGTTTATAA  650

seq1  AGAACTCAAAACATCATATGTCTAAATGTACAACACATAGGGCCAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAAACATCATATGTCTAAATGTACAACACATAGGGCCAGTGAG  700

seq1  AGGGCGGAGTGAGAAAGGATGCTTGCTGTCAAACCTGGTGGTCTAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGAGTGAGAAAGGATGCTTGCTGTCAAACCTGGTGGTCTAAATTG  750

seq1  GATATTTGGGACCCACATGCTAGATGGAGAGAACCAAGCCCTGCAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGGGACCCACATGCTAGATGGAGAGAACCAAGCCCTGCAATTTG  800

seq1  TCTTCTGACCACATACATCCTATGTTACATAGGCCATCAAACACAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGACCACATACATCCTATGTTACATAGGCCATCAAACACAAAATA  850

seq1  AATAAGTGCAAATCCAGGGGGTTGGCGTTGTTTCTTTTGTTTTGCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGCAAATCCAGGGGGTTGGCGTTGTTTCTTTTGTTTTGCAAGAA  900

seq1  AAAGTAAATATACAACTGACAACAGACCCCAAGGCTTAAATATTCATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATATACAACTGACAACAGACCCCAAGGCTTAAATATTCATGAA  950

seq1  ATTTGTTTTCTTCTCTATTACATGTATGTGTGTGCTGCTAGAGGATTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTGTTTTCTTCTCTATTACATGTATGTGTGTGCTGCTAGAGGA-TTTA  999

seq1  TAAACTGCCTTTTGGATGACGTGTTTTAGTGAGTAGCAGTGAGGTCTGAA  1050
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TAAACTGCCTTTTGGATGACGTG-TTTAGTGAGTAGCAGTGA-GTCTGAA  1047

seq1  GTGAAGCCTCTTCTTTAGGTTGTGTTTCATTCCAAGCTAAAGTCATATAA  1100
      ||||||||||||| ||||| |||| |||||||| |||||| ||||||| |
seq2  GTGAAGCCTCTTC-TTAGG-TGTG-TTCATTCC-AGCTAAGGTCATAT-A  1092

seq1  GCAGGTCAATCTCATGAATGACCTCAAGAGAATCTCAGCTTTGCTTCCCC  1150
      ||| ||| |||||||| |||||||| ||||||||||||| |||| |||||
seq2  GCA-GTC-ATCTCATG-ATGACCTC-AGAGAATCTCAGC-TTGCCTCCCC  1137

seq1  TGGCTGCTGTTCTGGAGAAAGAATTATA  1178
      || |||||| |||||||||  |||||||
seq2  TGCCTGCTG-TCTGGAGAAGAAATTATA  1164