BAC Information

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BAC

Clone NameB6Ng01-107J15
Chromosome1 (Build37)
Map Location 56,879,869 - 56,880,995
singlet/doubletsinglet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107J15.bB6Ng01-107J15.g
ACCDH915022DH915023
length1,0281,109
definitionDH915022|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J15, 5' end.DH915023|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctttgtatcccatttttaataaggttatttgtttc
tctggagtctaacttcttgaattctttgtatatattggacctgaggaccc
agtaatacaactcctgggcatatacccagaagatgctccaacatgtagta
aggacacatgctccactatgttcatagcagtcttatttataatagccaga
agctggaaagaaccaagatgtccctcaacagaggaatggatacagaaaat
gtggtacatttacacaatggagtactactcagctattaaaaacaatgaac
ttatgaaattcttaggcaaatggatgcatctggaggatatcatcctgagt
gaggtaacccaatcacaaaagaacacacatgatatgcattcactgataag
aggatattagcccagaagatcagaatactcaacatacacttcacaaacca
catgaaactctagaaaaggaagaccaaagtgtggatacttcgatccttct
tagaaggggaaacaaaatacccatggaagaacttacagagacaaagtgtg
gagtagagactgaagaaatgaccatccagagactgaccaacctagggatc
catcccatatacaaccaccaaactcagacactgttgtggatgccaacaaa
tgcttgctgacaggagcctgatatagctgtctcctgagaggttcttccag
tgcctgacaaatacagaggtggatgctcacagccatccattggaccaaac
atagggcccccagtgaaggagctagagaaaggacctacaaagcggaagtt
cctcccataggaggaacaacatgaactaaccagtacctcctgagctccct
gggactacaccaccaaccaaagaaaacacatggtggaactcatggctcca
gctgcatatgtagcagaggatggcctagtcggtcatcaatgggaggagag
gactttggtcctatgaaggctctatgccccagtgtgggggaatgctaggg
ccagaagtgggagtggattggttgggag
gaattcacttccaaaagaacagcttctaggaaaataaatagataagccaa
ttaattaattaaggatgtttgcaaattcgctaaccaggttactacaattt
ttttcccatcttggatacgttccaagcgcctatgcaaaacctgctgtttg
aatgtagtttccgttctcagcccttgctgtgctattaaggagctatggca
acgaagttttgccctatttactacattggggcaggtgagtataaagaagt
tggtcctcataaggaggattcttgttttctgtgtcaccagttaggattgc
agtatgtttaattaaaaaaaaaaatgtgctgcacaggaatagatagaaat
agaaatttgggggttttgctttttgggttttttgtttttttgttttttgc
taccagttctttttaggcaactgctgtgttcatcccaatgttcatagccc
taactgtgctgaaaagttttccccagggagctggagccagagtcagcttc
ttaggcagttgctatattagacttgggttttagcacacatttgagaatgg
aggcctgcttgctatggttaaatttaaagttccattatgaggtatataaa
tctgtatttggttgctgtgtttggaaacatagtagaggaaacagacagtg
aagaacttcgtggaaatccatgactctgagtgtggttagctgtgtagaag
gcagagggatgttcagtcaaaagttcgtgatctcacctcactgaccgtct
ttcacacagactcttccttctctaataagcttttcttccaaaccatcacc
tgctttgccctcatggcctgtgcgtctccacactgtaacctctgtgtacc
attcataatttctctgcattctaatactcctcatcagaacccaggcctgt
ctttgtccctactctacttcaaggtgttccctagtctggctcaagccagt
gtatgtgttcatccatatatactaccttagtactcccaagaagattgact
tgtccactttatcctctgaagcgatttcgaggcatgatttccagcagtac
tcagaagctttgttgaaagggcctgcatagatgcgctctcgagagacctt
cttttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56879869_56880995
seq2: B6Ng01-107J15.g_67_1175 (reverse)

seq1  TTGCAAAAGAAGGGTCT-TCCAGA-CGCATTCTAATGCAGCGCCTTTTCA  48
      ||||||||||| ||||| || ||| |||| ||| |||||| ||| |||||
seq2  TTGCAAAAGAA-GGTCTCTCGAGAGCGCA-TCT-ATGCAG-GCCCTTTCA  46

seq1  ACCAAGCGTCTGTGGTACTGCTTGGAAATTCATGCCTCGAAAATCTGCCT  98
      || |||| ||||  ||||||| |||||| |||||||||||||   |  ||
seq2  ACAAAGCTTCTG-AGTACTGC-TGGAAA-TCATGCCTCGAAA---TCGCT  90

seq1  TCAGAGGGATAAAGTGGACAGGTCAATTTCTCTTTGGGAGTTATCTAAGG  148
      ||||| |||||||||||||| |||||  |||  ||||||||   ||||||
seq2  TCAGA-GGATAAAGTGGACAAGTCAA--TCTTCTTGGGAGT--ACTAAGG  135

seq1  TAGTATATATGGATGAACACAATACACTGGCTTGAGCCAGGACTAGGGAA  198
      |||||||||||||||||||| |||||||||||||||||| |||||||| |
seq2  TAGTATATATGGATGAACAC-ATACACTGGCTTGAGCCA-GACTAGGG-A  182

seq1  ACACCTTGAAGTAGAGTAGGGGACAAAGACAGGCCTGGGTTCTGATGAGG  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACCTTGAAGTAGAGTA-GGGACAAAGACAGGCCTGGGTTCTGATGAGG  231

seq1  AGTAATTAGAATGCAGAGAAATTATGAATGGTACACAGAGGTTACAGTGT  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGT-ATTAGAATGCAGAGAAATTATGAATGGTACACAGAGGTTACAGTGT  280

seq1  GGAGACGCACAGGCCATGAGGGCAAAGCAGGTGATGGTTTGGAAGAAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGCACAGGCCATGAGGGCAAAGCAGGTGATGGTTTGGAAGAAAAG  330

seq1  CTTATTAGAGAAGGAAGAGTCTGTGTGAAAGACGGTCAGTGAGGTGAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGAGAAGGAAGAGTCTGTGTGAAAGACGGTCAGTGAGGTGAGAT  380

seq1  CACGAACTTTTGACTGAACATCCCTCTGCCTTCTACACAGCTAACCACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACTTTTGACTGAACATCCCTCTGCCTTCTACACAGCTAACCACAC  430

seq1  TCAGAGTCATGGATTTCCACGAAGTTCTTCACTGTCTGTTTCCTCTACTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCATGGATTTCCACGAAGTTCTTCACTGTCTGTTTCCTCTACTA  480

seq1  TGTTTCCAAACACAGCAACCAAATACAGATTTATATACCTCATAATGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAACACAGCAACCAAATACAGATTTATATACCTCATAATGGAA  530

seq1  CTTTAAATTTAACCATAGCAAGCAGGCCTCCATTCTCAAATGTGTGCTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTTAACCATAGCAAGCAGGCCTCCATTCTCAAATGTGTGCTAA  580

seq1  AACCCAAGTCTAATATAGCAACTGCCTAAGAAGCTGACTCTGGCTCCAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGTCTAATATAGCAACTGCCTAAGAAGCTGACTCTGGCTCCAGC  630

seq1  TCCCTGGGGAAAACTTTTCAGCACAGTTAGGGCTATGAACATTGGGATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGAAAACTTTTCAGCACAGTTAGGGCTATGAACATTGGGATGA  680

seq1  ACACAGCAGTTGCCTAAAAAGAACTGGTAGCAAAAAACAAAAAAACAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGTTGCCTAAAAAGAACTGGTAGCAAAAAACAAAAAAACAAAA  730

seq1  AACCCAAAAAGCAAAACCCCCAAATTTCTATTTCTATCTATTCCTGTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAAAGCAAAACCCCCAAATTTCTATTTCTATCTATTCCTGTGCA  780

seq1  GCACATTTTTTTTTTTAATTAAACATACTGCAATCCTAACTGGTGACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTTTTTTTAATTAAACATACTGCAATCCTAACTGGTGACACA  830

seq1  GAAAACAAGAATCCTCCTTATGAGGACCAACTTCTTTATACTCACCTGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGAATCCTCCTTATGAGGACCAACTTCTTTATACTCACCTGCC  880

seq1  CCAATGTAGTAAATAGGGCAAAACTTCGTTGCCATAGCTCCTTAATAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAGTAAATAGGGCAAAACTTCGTTGCCATAGCTCCTTAATAGCA  930

seq1  CAGCAAGGGCTGAGAACGGAAACTACATTCAAACAGCAGGTTTTGCATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGGCTGAGAACGGAAACTACATTCAAACAGCAGGTTTTGCATAG  980

seq1  GCGCTTGGAACGTATCCAAGATGGGAAAAAAATTGTAGTAACCTGGTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTGGAACGTATCCAAGATGGGAAAAAAATTGTAGTAACCTGGTTAG  1030

seq1  CGAATTTGCAAACATCCTTAATTAATTAATTGGCTTATCTATTTATTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTGCAAACATCCTTAATTAATTAATTGGCTTATCTATTTATTTTC  1080

seq1  CTAGAAGCTGTTCTTTTGGAAGTGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  CTAGAAGCTGTTCTTTTGGAAGTGAATTC  1109