BAC Information

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BAC

Clone NameB6Ng01-108I01
Chromosome1 (Build37)15 (Build37)
Map Location 71,166,836 - 71,167,97756,720,236 - 56,720,790
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
Downstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I01.bB6Ng01-108I01.g
ACCDH915672DH915673
length1,135814
definitionDH915672|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I01, 5' end.DH915673|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,166,836 - 71,167,977)(56,720,236 - 56,720,790)
sequence
gaattccaagcaaagaaagaattcaaaatgagaaatggcaggaatgtgaa
ctacagccatcatccagggaggtttgacccaggtatgacattctgtttca
gtttgtttctcatgaagcacatcatacaaattttaaattgtgaattacat
ttcaatttctagttcatttccaatagggctttaacaaaacataagattct
ttcttcaaaaacacgtgttctatatgtgcagaatttaaaatatcgtgaaa
tatttaacaaaacattgatcagtaacaataagtctgtactttacctataa
ctgttcaagtgaaatggaataaaacctgttttgaaaacacgcttctatgg
caagtaatcatgttaccttttgtatgtggagtgttattactggtcaaaac
agtctattgagataagccacaaggtatctgaaaatataatttaaaataaa
aatagcccctcaagaatggacttcaacccaactgtgtgttcagtactcat
tattatcataaaccagaacaagcagtatccaaataatcaagtacccatta
cccatggttcattagaatgtaccaggagcaaatgtaccaatatagcctgt
ccctcacttacagggatggccttggctgaatcacaataaacaaggctatt
cagacatatgcccttttcaattactcagtacaggaagagatcaaaattta
ttcaagcagtgggagtctctgatacttagaaaaaaatttttgaaagtaca
ttggatagggaagagattaagtttcaaatccagagtggagatttggtttt
acatagtggaaaataataatacaacaggggactcctgagggtttgtgtgt
tctgctggggttgatttgttcaaacttgattttcatgtagaaaatgaatt
ttgtttgtttggctcggagagtattttataggttttcagaaggtgtacat
ttttccccaggtcatatgaacactgagtatgtgacctgtgcctgtaatct
gagcacaggttgagtggttgctattgggttgagactagcctgggctaata
tacatacattcatacctgttcaactgttcctgaatttacatggacttcca
aagacaggctgggttggaaggaatggctcagcagt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttggtgattttctcaaagaacccaactcctcgtttggttaattcttt
gaatagttcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71166836_71167977
seq2: B6Ng01-108I01.b_48_1182

seq1  GAATTCCAAGCAAAGAAAGAATTCAAAATGAGAAATGGCAGGAATGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCAAAGAAAGAATTCAAAATGAGAAATGGCAGGAATGTGAA  50

seq1  CTACAGCCATCATCCAGGGAGGTTTGACCCAGGTATGACATTCTGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCATCATCCAGGGAGGTTTGACCCAGGTATGACATTCTGTTTCA  100

seq1  GTTTGTTTCTCATGAAGCACATCATACAAATTTTAAATTGTGAATTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCTCATGAAGCACATCATACAAATTTTAAATTGTGAATTACAT  150

seq1  TTCAATTTCTAGTTCATTTCCAATAGGGCTTTAACAAAACATAAGATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCTAGTTCATTTCCAATAGGGCTTTAACAAAACATAAGATTCT  200

seq1  TTCTTCAAAAACACGTGTTCTATATGTGCAGAATTTAAAATATCGTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAAACACGTGTTCTATATGTGCAGAATTTAAAATATCGTGAAA  250

seq1  TATTTAACAAAACATTGATCAGTAACAATAAGTCTGTACTTTACCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAAAACATTGATCAGTAACAATAAGTCTGTACTTTACCTATAA  300

seq1  CTGTTCAAGTGAAATGGAATAAAACCTGTTTTGAAAACACGCTTCTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAGTGAAATGGAATAAAACCTGTTTTGAAAACACGCTTCTATGG  350

seq1  CAAGTAATCATGTTACCTTTTGTATGTGGAGTGTTATTACTGGTCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATCATGTTACCTTTTGTATGTGGAGTGTTATTACTGGTCAAAAC  400

seq1  AGTCTATTGAGATAAGCCACAAGGTATCTGAAAATATAATTTAAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGAGATAAGCCACAAGGTATCTGAAAATATAATTTAAAATAAA  450

seq1  AATAGCCCCTCAAGAATGGACTTCAACCCAACTGTGTGTTCAGTACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCCTCAAGAATGGACTTCAACCCAACTGTGTGTTCAGTACTCAT  500

seq1  TATTATCATAAACCAGAACAAGCAGTATCCAAATAATCAAGTACCCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCATAAACCAGAACAAGCAGTATCCAAATAATCAAGTACCCATTA  550

seq1  CCCATGGTTCATTAGAATGTACCAGGAGCAAATGTACCAATATAGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTTCATTAGAATGTACCAGGAGCAAATGTACCAATATAGCCTGT  600

seq1  CCCTCACTTACAGGGATGGCCTTGGCTGAATCACAATAAACAAGGCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTTACAGGGATGGCCTTGGCTGAATCACAATAAACAAGGCTATT  650

seq1  CAGACATATGCCCTTTTCAATTACTCAGTACAGGAAGAGATCAAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATATGCCCTTTTCAATTACTCAGTACAGGAAGAGATCAAAATTTA  700

seq1  TTCAAGCAGTGGGAGTCTCTGATACTTAGAAAAAAATTTTTGAAAGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAGTGGGAGTCTCTGATACTTAGAAAAAAATTTTTGAAAGTACA  750

seq1  TTGGATAGGGAAGAGATTAAGTTTCAAATCCAGAGTGGAGATTTGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGGGAAGAGATTAAGTTTCAAATCCAGAGTGGAGATTTGGTTTT  800

seq1  ACATAGTGGAAAATAATAATACAACAGGGGACTCCTGAGGGTTTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGGAAAATAATAATACAACAGGGGACTCCTGAGGGTTTGTGTGT  850

seq1  TCTGCTGGGGTTGATTTGTTCAAACTTGATTTTCATGTAGAAAATGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGGTTGATTTGTTCAAACTTGATTTTCATGTAGAAAATGAATT  900

seq1  TTGTTTGTTTGGCTCGGAGAGTATTTTATAGGTTTTCAGAA-GTGTACA-  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TTGTTTGTTTGGCTCGGAGAGTATTTTATAGGTTTTCAGAAGGTGTACAT  950

seq1  TTTTCCCCAGGTCATATGAACACTGAGTATGGTGACCTGTGCCTGTAATC  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTCCCCAGGTCATATGAACACTGAGTAT-GTGACCTGTGCCTGTAATC  999

seq1  TGAGCACCAGGTTGAGAAGGGTTGCTATGGGTTTGAGACTAGCCTGGGCT  1048
      |||||| |||||||||   ||||||||| || ||||||||||||||||||
seq2  TGAGCA-CAGGTTGAG--TGGTTGCTATTGGGTTGAGACTAGCCTGGGCT  1046

seq1  -ATATACATACATTCATACCTGTTTCAAAACATGTTCCTTGATTTACATG  1097
       ||||||||||||||||||||| |||||    |||||||  |||||||||
seq2  AATATACATACATTCATACCTG-TTCAA---CTGTTCCTGAATTTACATG  1092

seq1  GCACTTCAAAAGACAGTGCTTGGGTTGGTAGG-ATGGCTCAGCAGT  1142
      | ||||| |||||||| || |||||||| ||| |||||||||||||
seq2  G-ACTTCCAAAGACAG-GC-TGGGTTGGAAGGAATGGCTCAGCAGT  1135

seq1: chr15_56720236_56720790
seq2: B6Ng01-108I01.g_327_883 (reverse)

seq1  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTT-GGTTCTTTGAG  49
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGGTTCTTTGAG  50

seq1  AAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAG  99
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAG  100

seq1  GGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA  150

seq1  CAGATCCTGAAGAAATCC-AAAACACCATCAGATCCTTCTACAAAAGGCT  198
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGATCCTGAAGAAATCCAAAAACACCATCAGATCCTTCTACAAAAGGCT  200

seq1  ATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACA  250

seq1  GATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGT  300

seq1  CCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAA  350

seq1  AAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA  400

seq1  AAGAAGATCTAACTCCAATTCTGCACAAACTTTTTCACAAGATAGAAGTA  448
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA  450

seq1  GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACC  500

seq1  TAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTC  550

seq1  TTATGAA  555
      |||||||
seq2  TTATGAA  557