BAC Information

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BAC

Clone NameB6Ng01-108M24
Chromosome1 (Build37)
Map Location 47,270,972 - 47,424,017
singlet/doubletdoublet
Overlap geneEG227061
Upstream geneDnahc7b, LOC666855, Slc39a10
Downstream geneLOC666869, LOC546734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108M24.bB6Ng01-108M24.g
ACCDH915897DH915898
length1,1201,021
definitionDH915897|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M24, 5' end.DH915898|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,270,972 - 47,272,101)(47,422,994 - 47,424,017)
sequence
gaattctgcataattcataattacaatttccatagtatggttcttttagc
ttttcaggcactgaaattggcatggggatacattgcaaaggctgagcttg
taggtaccagcaatgttcaaaacttgctctttggaagagagggcattgag
gaaaaatgactacctatgatcaaattaatactaagtatgagactccaggc
tgaagcaagaaatatggagggagaatgatgtcgtaagaacaaatatgaga
ttagaaaccaatgatcaaaattgcaaagaaaagagaaattgattgagaaa
tttttggcaatgagataaaatgaagtaatctacttaaaaattcagggttt
ggacagcctaagatagcttatgatttcttgtgagaaaataataggtttct
ttggaatgaatcaaagcacttagtggcatattatatagacagcaatgtga
gtaagtctaaatgtcaactgtgtactctgaataaagtggagcaattgtgc
atgttggttttttttatcatcagggagggcttttgagtaattttttactt
agaaattgctcatattttactgtaagtcaaattcataaaacttctcctag
tagagatatttggcaagtacagctttagtagaaaaactttaacagaactt
catttgtaagagaactatttctgaagttccttacttgtgtccagccacac
aaataatgtttgttttcttcacagttacctccttaatacacctcatcttc
tatgcagtttccacattgtgaggttagtaatcatctttagcagtgtgtaa
ggtccatgtctcctttctttgacttgagaaggtcttgtagatgttataat
gcagatagggatgcacttgtttcttcacagatatgaccatcaaaatggca
tgaacattattgtattctttaggcactgaagttcagaatttgaccctcat
gcttcgagggacatgagtagcttcatgaatatttacagaaagtgttctgg
ctagtagccacaaccagggttgtatgtataaaagcatcttgtccctgaat
atgtggggtgggtttgcaatgatctacttctatcgagtcatcctagcttt
gtcaatccagctgacatgag
gaattccaatgatttactgaatgaagatgtatatgtgagaagagtatgga
aagacaattacaaactgatgtaaacaggagaatttgaaagttatacattc
tctataaattgcattcattgtacataatattggtaatatttccaactgga
caaactgaagagttcaaataagttttaaatattgtcctatatattggctg
aaagcaaagcagtcacttataaaatgtaatatttgcatactgatgataca
ctttacaaatgtagatgtggcttaaagattatccagaagttagggggaaa
tgctattgtttatcatagtttgttcactattaaatctctcaatgtatgaa
caaaaaaattaacaaagtacatgacaacaaggaaaaatcattattttcat
tttactctttatgtattcaagataagttcattgattgtggttttcagaca
aaaatttaataacagaaattgtactgcagtaatgtattttataaacactc
ctattttgcaatgcctaatcactcatgatggagaacgtttccataattac
tggtaacataagcttcaaatcatatttgttttcttcaaatgaaagaaata
atttcaagttgctttgttctcacatactttaggcccacttcagaaatcaa
cacttaaatgttatttcattaacaggtatcaaaatatggcttttggccgc
caccagcgcagctgtgccacagctgcgaggagactggccgcctgacttcc
ctcctcgctggccgcggtgtcctcagatttattccaacagtcagttaaaa
catggtggattactatgaagtgctgggcgtgcggagacatgcctcacctg
aggacattaaaaaggcgtatcgaaaacagtcacttaaatggcacccggac
aaaaatcctgaaaataaagaagaagcagagcggagttcaaacaagtagct
gagcatatgaagtgttatcggatgctaaaagcgggacatctacgacaaaa
aatggcaaagaaggataaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47270972_47272101
seq2: B6Ng01-108M24.b_44_1163

seq1  GAATTCTGCATAATTCATAATTACAATTTCCATAGTATGGTTCTTTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATAATTCATAATTACAATTTCCATAGTATGGTTCTTTTAGC  50

seq1  TTTTCAGGCACTGAAATTGGCATGGGGATACATTGCAAAGGCTGAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGCACTGAAATTGGCATGGGGATACATTGCAAAGGCTGAGCTTG  100

seq1  TAGGTACCAGCAATGTTCAAAACTTGCTCTTTGGAAGAGAGGGCATTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCAGCAATGTTCAAAACTTGCTCTTTGGAAGAGAGGGCATTGAG  150

seq1  GAAAAATGACTACCTATGATCAAATTAATACTAAGTATGAGACTCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTACCTATGATCAAATTAATACTAAGTATGAGACTCCAGGC  200

seq1  TGAAGCAAGAAATATGGAGGGAGAATGATGTCGTAAGAACAAATATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGAAATATGGAGGGAGAATGATGTCGTAAGAACAAATATGAGA  250

seq1  TTAGAAACCAATGATCAAAATTGCAAAGAAAAGAGAAATTGATTGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACCAATGATCAAAATTGCAAAGAAAAGAGAAATTGATTGAGAAA  300

seq1  TTTTTGGCAATGAGATAAAATGAAGTAATCTACTTAAAAATTCAGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCAATGAGATAAAATGAAGTAATCTACTTAAAAATTCAGGGTTT  350

seq1  GGACAGCCTAAGATAGCTTATGATTTCTTGTGAGAAAATAATAGGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTAAGATAGCTTATGATTTCTTGTGAGAAAATAATAGGTTTCT  400

seq1  TTGGAATGAATCAAAGCACTTAGTGGCATATTATATAGACAGCAATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGAATCAAAGCACTTAGTGGCATATTATATAGACAGCAATGTGA  450

seq1  GTAAGTCTAAATGTCAACTGTGTACTCTGAATAAAGTGGAGCAATTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTAAATGTCAACTGTGTACTCTGAATAAAGTGGAGCAATTGTGC  500

seq1  ATGTTGGTTTTTTTTATCATCAGGGAGGGCTTTTGAGTAATTTTTTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTTTTTTTTATCATCAGGGAGGGCTTTTGAGTAATTTTTTACTT  550

seq1  AGAAATTGCTCATATTTTACTGTAAGTCAAATTCATAAAACTTCTCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGCTCATATTTTACTGTAAGTCAAATTCATAAAACTTCTCCTAG  600

seq1  TAGAGATATTTGGCAAGTACAGCTTTAGTAGAAAAACTTTAACAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATATTTGGCAAGTACAGCTTTAGTAGAAAAACTTTAACAGAACTT  650

seq1  CATTTGTAAGAGAACTATTTCTGAAGTTCCTTACTTGTGTCCAGCCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGAGAACTATTTCTGAAGTTCCTTACTTGTGTCCAGCCACAC  700

seq1  AAATAATGTTTGTTTTCTTCACAGTTACCTCCTTAATACACCTCATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTTTGTTTTCTTCACAGTTACCTCCTTAATACACCTCATCTTC  750

seq1  TATGCAGTTTCCACATTGTGAGGTTAGTAATCATC-TTAGCAGTGTGTAA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGCAGTTTCCACATTGTGAGGTTAGTAATCATCTTTAGCAGTGTGTAA  800

seq1  GGTCCATGTCTCCTTTCTTTGACTTGAGAAGGTCTTGTAGATGTTATAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGTCTCCTTTCTTTGACTTGAGAAGGTCTTGTAGATGTTATAAT  850

seq1  GCAGATAGGGATGCACTTGTTTCTTCACAGATATGACCATCAAAATGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGGGATGCACTTGTTTCTTCACAGATATGACCATCAAAATGGCA  900

seq1  TGAACATTATTGTATTCTTTAGGCACTGAAGTTCAGAATTTGACCCTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTATTGTATTCTTTAGGCACTGAAGTTCAGAATTTGACCCTCAT  950

seq1  GCTTCGAGGGACATGAGTAGCTTCATGAATATTTACAGAAAGGTGTTCTG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTCGAGGGACATGAGTAGCTTCATGAATATTTACAGAAA-GTGTTCTG  999

seq1  GCTAGTAGCCACAACCAGGGTTGTATGTATTAAAAAGCCATCCTTGTTCC  1049
      ||||||||||||||||||||||||||||||  ||||| ||| |||| |||
seq2  GCTAGTAGCCACAACCAGGGTTGTATGTAT--AAAAG-CAT-CTTG-TCC  1044

seq1  CTGAATATGTGGGTGGGTTTTGCAAATGATTCTAC-TCTATCGAGTCAAT  1098
      |||||||||||||  || ||||| ||||| ||||| ||||||||||| ||
seq2  CTGAATATGTGGGGTGGGTTTGC-AATGA-TCTACTTCTATCGAGTC-AT  1091

seq1  CCTAGCCTTTTTGTCAATCCAGCTGACATGAG  1130
      ||||||   |||||||||||||||||||||||
seq2  CCTAGC---TTTGTCAATCCAGCTGACATGAG  1120

seq1: chr1_47422994_47424017
seq2: B6Ng01-108M24.g_65_1085 (reverse)

seq1  CATTTAATCCTTCTTTGCCA-TATTTGTCGTAGATGTCCCGCTTTTTAGC  49
      ||||| |||||||||||||| | ||||||||||||||||||| |||||||
seq2  CATTT-ATCCTTCTTTGCCATTTTTTGTCGTAGATGTCCCGC-TTTTAGC  48

seq1  ATCCGATAACACTTCATATGCCTCAGCTACTTGTTTGAACTTCCGCTCTG  99
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  ATCCGATAACACTTCATATG-CTCAGCTACTTGTTTGAAC-TCCGCTCTG  96

seq1  CTTCTTCTTTATTTTCAGGATTTTTGTCCGGGTGCCATTTAAGTGACTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTTATTTTCAGGATTTTTGTCCGGGTGCCATTTAAGTGACTGT  146

seq1  TTTCGATACGCCTTTTTAATGTCCTCAGGTGAGGCATGTCTCCGCACGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATACGCCTTTTTAATGTCCTCAGGTGAGGCATGTCTCCGCACGCC  196

seq1  CAGCACTTCATAGTAATCCACCATGTTTTAACTGACTGTTGGAATAAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTCATAGTAATCCACCATGTTTTAACTGACTGTTGGAATAAATC  246

seq1  TGAGGACACCGCGGCCAGCGAGGAGGGAAGTCAGGCGGCCAGTCTCCTCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACACCGCGGCCAGCGAGGAGGGAAGTCAGGCGGCCAGTCTCCTCG  296

seq1  CAGCTGTGGCACAGCTGCGCTGGTGGCGGCCAAAAGCCATATTTTGATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGCACAGCTGCGCTGGTGGCGGCCAAAAGCCATATTTTGATAC  346

seq1  CTGTTAATGAAATAACATTTAAGTGTTGATTTCTGAAGTGGGCCTAAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATGAAATAACATTTAAGTGTTGATTTCTGAAGTGGGCCTAAAGT  396

seq1  ATGTGAGAACAAAGCAACTTGAAATTATTTCTTTCATTTGAAGAAAACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAACAAAGCAACTTGAAATTATTTCTTTCATTTGAAGAAAACAA  446

seq1  ATATGATTTGAAGCTTATGTTACCAGTAATTATGGAAACGTTCTCCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTGAAGCTTATGTTACCAGTAATTATGGAAACGTTCTCCATCA  496

seq1  TGAGTGATTAGGCATTGCAAAATAGGAGTGTTTATAAAATACATTACTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTAGGCATTGCAAAATAGGAGTGTTTATAAAATACATTACTGC  546

seq1  AGTACAATTTCTGTTATTAAATTTTTGTCTGAAAACCACAATCAATGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATTTCTGTTATTAAATTTTTGTCTGAAAACCACAATCAATGAAC  596

seq1  TTATCTTGAATACATAAAGAGTAAAATGAAAATAATGATTTTTCCTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGAATACATAAAGAGTAAAATGAAAATAATGATTTTTCCTTGTT  646

seq1  GTCATGTACTTTGTTAATTTTTTTGTTCATACATTGAGAGATTTAATAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTACTTTGTTAATTTTTTTGTTCATACATTGAGAGATTTAATAGT  696

seq1  GAACAAACTATGATAAACAATAGCATTTCCCCCTAACTTCTGGATAATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACTATGATAAACAATAGCATTTCCCCCTAACTTCTGGATAATCT  746

seq1  TTAAGCCACATCTACATTTGTAAAGTGTATCATCAGTATGCAAATATTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCACATCTACATTTGTAAAGTGTATCATCAGTATGCAAATATTAC  796

seq1  ATTTTATAAGTGACTGCTTTGCTTTCAGCCAATATATAGGACAATATTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAGTGACTGCTTTGCTTTCAGCCAATATATAGGACAATATTTA  846

seq1  AAACTTATTTGAACTCTTCAGTTTGTCCAGTTGGAAATATTACCAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTTGAACTCTTCAGTTTGTCCAGTTGGAAATATTACCAATATT  896

seq1  ATGTACAATGAATGCAATTTATAGAGAATGTATAACTTTCAAATTCTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAATGAATGCAATTTATAGAGAATGTATAACTTTCAAATTCTCCT  946

seq1  GTTTACATCAGTTTGTAATTGTCTTTCCATACTCTTCTCACATATACATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATCAGTTTGTAATTGTCTTTCCATACTCTTCTCACATATACATC  996

seq1  TTCATTCAGTAAATCATTGGAATTC  1024
      |||||||||||||||||||||||||
seq2  TTCATTCAGTAAATCATTGGAATTC  1021