BAC Information

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BAC

Clone NameB6Ng01-109D14
Chromosome1 (Build37)
Map Location 89,675,666 - 89,792,119
singlet/doubletdoublet
Overlap geneAtg16l1, Sag
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D14.bB6Ng01-109D14.g
ACCDH916187DH916188
length1,0741,103
definitionDH916187|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D14, 5' end.DH916188|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,791,591 - 89,792,119)(89,675,666 - 89,676,782)
sequence
gaattcattatcagaaatatcaaaagtttaagattagaaatctgagtggt
agaacactcacctaacacagatgataccctgggttcaatcaggaaaagaa
aaaagagaatattaagaagtattaccaaaaactttgctcaaaagaaaaac
cccacacttcatgtttcactagtaaattctagtaaacatttgagaaggaa
atggcatgaacttacacaaagtttatcagaaaacagcaggtaaccattga
ctctccgtttttaaaaatgttatgaagtcagctaaacctaagcaccaaaa
tttgacaaagatataaagacagaaagacaacaaaaagagaaagacaatgg
aagagaagaagtaggaggatagaagtcaatgtacttcacatagacagatg
taaagttctttaacaaaataggagtgtcatgccctaggactgttctagtc
tattagaatatctgtctattagaatatcaagcttgctgggtatggtggca
tatgctcttaactccaacacttggaaggcagaagcaggcagatttctatg
agatcaaggccagcttgatttacaaagccaagccaaggctacatagtgag
accttgtctcagaaaaaaaaaaaaggaaaatagaggaagaaagcgagaac
gagaaaaagatagttagattaatcttctggagctgaatagatctgttggt
gttaagagcattttttttttacctcttccagaagacccaagttcaattcc
cagcactgatactgtggcttataaccactcgtaagcccagtcccaaagga
tctaaaggcctcttctggctcttacagacaccatgcatgcatggttgcac
tgacatatacacaggcaaaacactcataacacagaaaatagaaaataaat
aacaaagcatgagactaggatatggacagttatacaaatcagagaagcag
aattagactgtagagggctgggtgtggtcattccactaaccccaactagg
aaggctaacacagagacactatggatgcaaagctagtctaagctacacag
tgagtttgagcagctttgcagcag
gaattcactttattttgaattacattttaatttgtttaatgtatgagtag
tggagttgggactagttgagatcacatgacttgaagtgcagcatagcctg
gaactcatggttctgctgctgtgtcttctccaggactgaggtaaaaatcc
tgggctcttaacactgaagccttctctagctaggctctagagcaaagaga
aagactcggattactgcttttgatgtttgtttgagcacaagcagtttatt
gaacctttgatctgaatatattgattgttggtgaagcattgtacctgtct
gctctttatttgacttgcaggaaagtgactcaggtaaaccccttaatctg
ttgaagcctgcgagagtgttatgccttgctccgagacatgttaggacaga
cggaatgactaaagtgggcggaagataaagctcaaccataaggaaataaa
tcttggcagatgttctttgtgaaagttaatcagttgcaggtgtagctcag
cagtagaacacttgcctagctattaactagcatggttttgggttttgggg
tcagtaaacacctctgggagatgagaagagtgaatggggagctggaagag
aagtactgttggtgagggaggctgtgcacagggagggaggattgacagct
ggctgtcttgataggattatagagtccaacagtttctcaggtcataatga
aatgaacattaccaaaacaggaattacgaaaagttggaggtggttttcaa
aatttagtttccatcaatagtgatggaaactcaaatactgatgtagcaaa
attcactgagaatgaatgtgaaggcctgcgtgtgtcctaaagggcaactt
ggaaatatgtttgtaccatgcctgagtctgcattgtcttaggacttgaat
tgcagtagacgctctgttctcttctgtcttgcccgactccacagcactgc
agtaacctctgttcagtgatacgattggcactgtgcactgtgcacactgc
ccttctactttaattttttttcatgcagataaatgtgaatcagggctcct
ggtctggcagtatgctggattacagcatgaatttgatagggctttgtacc
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89791591_89792119
seq2: B6Ng01-109D14.b_45_573 (reverse)

seq1  GCCTTCCAAGTGTTGGAGTTAAGAGCATATGCCACCATACCCAGCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAAGTGTTGGAGTTAAGAGCATATGCCACCATACCCAGCAAGCT  50

seq1  TGATATTCTAATAGACAGATATTCTAATAGACTAGAACAGTCCTAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTAATAGACAGATATTCTAATAGACTAGAACAGTCCTAGGGCA  100

seq1  TGACACTCCTATTTTGTTAAAGAACTTTACATCTGTCTATGTGAAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCCTATTTTGTTAAAGAACTTTACATCTGTCTATGTGAAGTACA  150

seq1  TTGACTTCTATCCTCCTACTTCTTCTCTTCCATTGTCTTTCTCTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTATCCTCCTACTTCTTCTCTTCCATTGTCTTTCTCTTTTTGT  200

seq1  TGTCTTTCTGTCTTTATATCTTTGTCAAATTTTGGTGCTTAGGTTTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTGTCTTTATATCTTTGTCAAATTTTGGTGCTTAGGTTTAGCT  250

seq1  GACTTCATAACATTTTTAAAAACGGAGAGTCAATGGTTACCTGCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATAACATTTTTAAAAACGGAGAGTCAATGGTTACCTGCTGTTTT  300

seq1  CTGATAAACTTTGTGTAAGTTCATGCCATTTCCTTCTCAAATGTTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAACTTTGTGTAAGTTCATGCCATTTCCTTCTCAAATGTTTACTA  350

seq1  GAATTTACTAGTGAAACATGAAGTGTGGGGTTTTTCTTTTGAGCAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACTAGTGAAACATGAAGTGTGGGGTTTTTCTTTTGAGCAAAGTT  400

seq1  TTTGGTAATACTTCTTAATATTCTCTTTTTTCTTTTCCTGATTGAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATACTTCTTAATATTCTCTTTTTTCTTTTCCTGATTGAACCCA  450

seq1  GGGTATCATCTGTGTTAGGTGAGTGTTCTACCACTCAGATTTCTAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCATCTGTGTTAGGTGAGTGTTCTACCACTCAGATTTCTAATCTT  500

seq1  AAACTTTTGATATTTCTGATAATGAATTC  529
      |||||||||||||||||||||||||||||
seq2  AAACTTTTGATATTTCTGATAATGAATTC  529

seq1: chr1_89675666_89676782
seq2: B6Ng01-109D14.g_69_1171

seq1  GAATTCACTTTATTTTGAATTACATTTTAATTTGTTTAATGTATGAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATTTTGAATTACATTTTAATTTGTTTAATGTATGAGTAG  50

seq1  TGGAGTTGGGACTAGTTGAGATCACATGACTTGAAGTGCAGCATAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGGGACTAGTTGAGATCACATGACTTGAAGTGCAGCATAGCCTG  100

seq1  GAACTCATGGTTCTGCTGCTGTGTCTTCTCCAGGACTGAGGTAAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATGGTTCTGCTGCTGTGTCTTCTCCAGGACTGAGGTAAAAATCC  150

seq1  TGGGCTCTTAACACTGAAGCCTTCTCTAGCTAGGCTCTAGAGCAAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTAACACTGAAGCCTTCTCTAGCTAGGCTCTAGAGCAAAGAGA  200

seq1  AAGACTCGGATTACTGCTTTTGATGTTTGTTTGAGCACAAGCAGTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCGGATTACTGCTTTTGATGTTTGTTTGAGCACAAGCAGTTTATT  250

seq1  GAACCTTTGATCTGAATATATTGATTGTTGGTGAAGCATTGTACCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGATCTGAATATATTGATTGTTGGTGAAGCATTGTACCTGTCT  300

seq1  GCTCTTTATTTGACTTGCAGGAAAGTGACTCAGGTAAACCCCTTAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTATTTGACTTGCAGGAAAGTGACTCAGGTAAACCCCTTAATCTG  350

seq1  TTGAAGCCTGCGAGAGTGTTATGCCTTGCTCCGAGACATGTTAGGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCTGCGAGAGTGTTATGCCTTGCTCCGAGACATGTTAGGACAGA  400

seq1  CGGAATGACTAAAGTGGGCGGAAGATAAAGCTCAACCATAAGGAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATGACTAAAGTGGGCGGAAGATAAAGCTCAACCATAAGGAAATAAA  450

seq1  TCTTGGCAGATGTTCTTTGTGAAAGTTAATCAGTTGCAGGTGTAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAGATGTTCTTTGTGAAAGTTAATCAGTTGCAGGTGTAGCTCAG  500

seq1  CAGTAGAACACTTGCCTAGCTATTAACTAGCATGGTTTTGGGTTTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAACACTTGCCTAGCTATTAACTAGCATGGTTTTGGGTTTTGGGG  550

seq1  TCAGTAAACACCTCTGGGAGATGAGAAGAGTGAATGGGGAGCTGGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAACACCTCTGGGAGATGAGAAGAGTGAATGGGGAGCTGGAAGAG  600

seq1  AAGTACTGTTGGTGAGGGAGGCTGTGCACAGGGAGGGAGGATTGACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGTTGGTGAGGGAGGCTGTGCACAGGGAGGGAGGATTGACAGCT  650

seq1  GGCTGTCTTGATAGGATTATAGAGTCCAACAGTTTCTCAGGTCATAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTTGATAGGATTATAGAGTCCAACAGTTTCTCAGGTCATAATGA  700

seq1  AATGAACATTACCAAAACAGGAATTACGAAAAGTTGGAGGTGGTTTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATTACCAAAACAGGAATTACGAAAAGTTGGAGGTGGTTTTCAA  750

seq1  AATTTAGTTTCCATCAATAGTGATGGAAACTCAAATACTGATGTAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTTCCATCAATAGTGATGGAAACTCAAATACTGATGTAGCAAA  800

seq1  ATTCACTGAGAATGAATGTGAAGGCCTGCGTGTGTCCTAAAGGGCAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGAGAATGAATGTGAAGGCCTGCGTGTGTCCTAAAGGGCAACTT  850

seq1  GGAAATATGTTTGTACCATGCCTGAGTCTGCATTGTCTTAGGACTTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGTTTGTACCATGCCTGAGTCTGCATTGTCTTAGGACTTGAAT  900

seq1  TGCAGTAGAACGCTCTGTTCTCTTCTGTCTTGCCCGACTCCACAGCACTG  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAG-ACGCTCTGTTCTCTTCTGTCTTGCCCGACTCCACAGCACTG  949

seq1  CAGTAAACCTCCTGTTCAGTGATACGATTGGCACTGTGCACTGTGCACCA  1000
      |||| ||||| |||||||||||||||||||||||||||||||||||| ||
seq2  CAGT-AACCT-CTGTTCAGTGATACGATTGGCACTGTGCACTGTGCA-CA  996

seq1  CTGCCCCTCTTACTTTAATTTTTTTTTCATGCAGATAAATGTGAATTCAA  1050
      |||||| || |||||||| |||||||||||||||||||||||||||   |
seq2  CTGCCCTTC-TACTTTAA-TTTTTTTTCATGCAGATAAATGTGAAT--CA  1042

seq1  GGGCTCCCTGTCTGGCAGTAATGCTGGAATTACAAGCATTGAATTTGATA  1100
      |||||||  |||||||||| ||||||| ||||| |||| |||||||||||
seq2  GGGCTCCTGGTCTGGCAGT-ATGCTGG-ATTAC-AGCA-TGAATTTGATA  1088

seq1  GTGCTGTAAGTACCTAA  1117
      | ||| |  ||||||||
seq2  GGGCTTT--GTACCTAA  1103