BAC Information

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BAC

Clone NameB6Ng01-109I02
Chromosome1 (Build37)
Map Location 92,441,341 - 92,567,262
singlet/doubletdoublet
Overlap geneCops8
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I02.bB6Ng01-109I02.g
ACCDH916395DH916396
length1,0911,016
definitionDH916395|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I02, 5' end.DH916396|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,566,195 - 92,567,262)(92,441,341 - 92,442,358)
sequence
gaattctccagagggtgtcttacttttcccagagtggtttagatgtgaag
ctgcttttgaagtggatcagttcatggtcagcagccatgagcgtgattat
gagccttttggcctggtgacaggtgaagcctggctttcgaggatggttgc
ctgactctgagccattgttggagctgagcccatcccgaagagtctttcta
aaagctctgcagttgtggacaatgggtccatcttctggctggccacatgt
ccttggcaactttactgcctcttgtctgatctcagcctcagagtgtgaca
ggtgtcatggagaagagggacctggcatgcatcagtaatggtgatgccca
tgacagtgaatggtgcttggaaaggagaggaacagttggtgtgacagaca
agggccaggtcttagaggtgaccacagtgacctgggtggaaggcagacct
gctcagcctgacagcccaggtcacattgctgatggaagatagacagagct
acaggctctgccttttaagagtcctgcttaagccttaagtcttttcttat
gggccaggactggatggcactgcagatgggctctggagtaaagtgttctt
atgaaacccacacaaagctttcttgatgatgaatatggacgattgtccaa
gagcctgtcagagactgggcagtctttgtgtagagacagtatgttccaag
ggaagcagatgactcttgcattgagctacgctctcaatactttgatgtct
ttattttgaaaaggtatttctggcctctggtcatcccactctgaacatgt
tctgtctcacactgtctcacaaacactgctcctggtcatttttaatctcc
tcttcttttggaaggaagcctgtctttttcttctgttcatttcccttcag
tggttaagcccttagaccaaggggccatcactctactcttctgtaggttt
aaccttccactgtgaggggtgggtacacaggaaaccgctaatcagagaag
agaagcccatatccattagctagagctcacaaatctgtcatcagagctag
aaagctcctttcaagcctgtgctatgaccttcagaaattca
gaattcttttttttttttttttaatgaaatacaaaattgaatttcgatct
ctttaaaatgtccacatgtttttcacaggaatgtaaagattgggttaatt
tatgccctttcccctacctccagcaacaaaggagcccctattccaccccg
caagtgtaagctacatgcagggccattgttattgaggtgctgtctgttaa
gagtttgggaaaatgcacagtcaccccaggaggaagggtcagagggtagg
aggagagtgagttcagggacaatgtctcattgtggtacccagagttgagc
gaaatcttgtacaacttcagaaaaattctaagcagcatttgtaaggcaga
cgctgagttagaggctgcagcagacaggcatggtgacaagctcagagtga
ggactctctgaggctcctctgaggctttcccacgtggcagcatttgtagt
ctagaaaggcatcctgacctgtggcaaatgtccactgagttccccccccc
cccttccccacatcctcaagtgttctgccaccaattacatgggactctta
cttgaaattatcagcagacgtcctgtgacacatggcaactggcctcacga
ggggtctctactttccatggtgagcctcttcccggtgcctcgagttggat
gcttgagctctgaaatctcagaagcttctatggaggaatttcagaatcaa
accagagacttcccggtactgagttcccaaattgttcccatgtcagaaga
taatgatgtcactatctgatatactaatagcttcttgagaggaattgaga
gcacacgtcacggtaagaggctttacctctgaaattgtctgcagtcaagg
ctttggggcctgtttgttcccttctgacctctattcattttgagaaaggt
gggattttattttattttatttattttattttatttatttcatttgaaga
tagatcttcatgtaacccaggctggccttgaactcacatgtagcaggggg
atatctttgaacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92566195_92567262
seq2: B6Ng01-109I02.b_48_1123 (reverse)

seq1  CATAGCACAGCCTCTGAAGGGGCCTTTCCTAGCTCCTGATGACAGATTTG  50
      |||||||||| || |||| ||  |||| |||||| |||||||||||||||
seq2  CATAGCACAGGCT-TGAAAGGAGCTTT-CTAGCT-CTGATGACAGATTTG  47

seq1  TGAGCTCTAGCT-ATGATTATGGGC-TCTC-TCTCTGATTAGCGGTTTCC  97
      |||||||||||| |||  ||||||| |||| |||||||||||||||||||
seq2  TGAGCTCTAGCTAATGGATATGGGCTTCTCTTCTCTGATTAGCGGTTTCC  97

seq1  TGTGTACCCACCCTCAACAGT-GAAGGTTAAACCTACAAGAAGAGTAGAG  146
      |||||||||||||   ||||| ||||||||||||||| ||||||||||||
seq2  TGTGTACCCACCCCTCACAGTGGAAGGTTAAACCTAC-AGAAGAGTAGAG  146

seq1  TGATGG-CCCTTGGTCTAAGG--CTAAACACTGAAGGGAAATGAACAGAA  193
      |||||| ||||||||||||||   ||| ||||||||||||||||||||||
seq2  TGATGGCCCCTTGGTCTAAGGGCTTAACCACTGAAGGGAAATGAACAGAA  196

seq1  GAAAAAGACAGGCTTCCTTCC-AAAGAAGAGGAGATTAAAAATGACCAGG  242
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAAAAGACAGGCTTCCTTCCAAAAGAAGAGGAGATTAAAAATGACCAGG  246

seq1  AGCAGTG-TTGTGAGACAGTGTGAGACAG-ACATGTTCAGAGTGGGATGA  290
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAGTGTTTGTGAGACAGTGTGAGACAGAACATGTTCAGAGTGGGATGA  296

seq1  CCAGAGGCCAG-AATACCTTTTCAAAAT-AAGACATCAAAGTATTGAGAG  338
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CCAGAGGCCAGAAATACCTTTTCAAAATAAAGACATCAAAGTATTGAGAG  346

seq1  CGTAGCTCAATGCAAGAGTCATCTGCTTCCCTTGGAACATACTGTCTCTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGTAGCTCAATGCAAGAGTCATCTGCTTCCCTTGGAACATACTGTCTCTA  396

seq1  CACAAAGACTGCCCAGTCTCTGACAGGCTCTTGGACAATCGTCCATATTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACTGCCCAGTCTCTGACAGGCTCTTGGACAATCGTCCATATTC  446

seq1  ATCATCAAGAAAGCTTTGTGTGGGTTTCATAAGAACACTTTACTCCAGAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAGAAAGCTTTGTGTGGGTTTCATAAGAACACTTTACTCCAGAG  496

seq1  CCCATCTGCAGTGCCATCCAGTCCTGGCCCATAAGAAAAGACTTAAGGCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCAGTGCCATCCAGTCCTGGCCCATAAGAAAAGACTTAAGGCT  546

seq1  TAAGCAGGACTCTTAAAAGGCAGAGCCTGTAGCTCTGTCTATCTTCCATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGACTCTTAAAAGGCAGAGCCTGTAGCTCTGTCTATCTTCCATC  596

seq1  AGCAATGTGACCTGGGCTGTCAGGCTGAGCAGGTCTGCCTTCCACCCAGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTGACCTGGGCTGTCAGGCTGAGCAGGTCTGCCTTCCACCCAGG  646

seq1  TCACTGTGGTCACCTCTAAGACCTGGCCCTTGTCTGTCACACCAACTGTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGTCACCTCTAAGACCTGGCCCTTGTCTGTCACACCAACTGTT  696

seq1  CCTCTCCTTTCCAAGCACCATTCACTGTCATGGGCATCACCATTACTGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTTCCAAGCACCATTCACTGTCATGGGCATCACCATTACTGAT  746

seq1  GCATGCCAGGTCCCTCTTCTCCATGACACCTGTCACACTCTGAGGCTGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAGGTCCCTCTTCTCCATGACACCTGTCACACTCTGAGGCTGAG  796

seq1  ATCAGACAAGAGGCAGTAAAGTTGCCAAGGACATGTGGCCAGCCAGAAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAGAGGCAGTAAAGTTGCCAAGGACATGTGGCCAGCCAGAAGA  846

seq1  TGGACCCATTGTCCACAACTGCAGAGCTTTTAGAAAGACTCTTCGGGATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCATTGTCCACAACTGCAGAGCTTTTAGAAAGACTCTTCGGGATG  896

seq1  GGCTCAGCTCCAACAATGGCTCAGAGTCAGGCAACCATCCTCGAAAGCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCTCCAACAATGGCTCAGAGTCAGGCAACCATCCTCGAAAGCCA  946

seq1  GGCTTCACCTGTCACCAGGCCAAAAGGCTCATAATCACGCTCATGGCTGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACCTGTCACCAGGCCAAAAGGCTCATAATCACGCTCATGGCTGC  996

seq1  TGACCATGAACTGATCCACTTCAAAAGCAGCTTCACATCTAAACCACTCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGAACTGATCCACTTCAAAAGCAGCTTCACATCTAAACCACTCT  1046

seq1  GGGAAAAGTAAGACACCCTCTGGAGAATTC  1068
      ||||||||||||||||||||||||||||||
seq2  GGGAAAAGTAAGACACCCTCTGGAGAATTC  1076

seq1: chr1_92441341_92442358
seq2: B6Ng01-109I02.g_64_1079

seq1  GAATTCTTTTTTTTTTTTTTTTAATGAAATACAAAATTGAATTTCGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTTTAATGAAATACAAAATTGAATTTCGATCT  50

seq1  CTTTAAAATGTCCACATGTTTTTCACAGGAATGTAAAGATTGGGTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATGTCCACATGTTTTTCACAGGAATGTAAAGATTGGGTTAATT  100

seq1  TATGCCCTTTCCCCTACCTCCAGCAACAAAGGAGCCCCTATTCCACCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTTTCCCCTACCTCCAGCAACAAAGGAGCCCCTATTCCACCCCG  150

seq1  CAAGTGTAAGCTACATGCAGGGCCATTGTTATTGAGGTGCTGTCTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAAGCTACATGCAGGGCCATTGTTATTGAGGTGCTGTCTGTTAA  200

seq1  GAGTTTGGGAAAATGCACAGTCACCCCAGGAGGAAGGGTCAGAGGGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGGAAAATGCACAGTCACCCCAGGAGGAAGGGTCAGAGGGTAGG  250

seq1  AGGAGAGTGAGTTCAGGGACAATGTCTCATTGTGGTACCCAGAGTTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTGAGTTCAGGGACAATGTCTCATTGTGGTACCCAGAGTTGAGC  300

seq1  GAAATCTTGTACAACTTCAGAAAAATTCTAAGCAGCATTTGTAAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTGTACAACTTCAGAAAAATTCTAAGCAGCATTTGTAAGGCAGA  350

seq1  CGCTGAGTTAGAGGCTGCAGCAGACAGGCATGGTGACAAGCTCAGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGTTAGAGGCTGCAGCAGACAGGCATGGTGACAAGCTCAGAGTGA  400

seq1  GGACTCTCTGAGGCTCCTCTGAGGCTTTCCCACGTGGCAGCATTTGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCTGAGGCTCCTCTGAGGCTTTCCCACGTGGCAGCATTTGTAGT  450

seq1  CTAGAAAGGCATCCTGACCTGTGGCAAATGTCCACTGAGTTCCCCCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGGCATCCTGACCTGTGGCAAATGTCCACTGAGTTCCCCCCCCC  500

seq1  CCCTTCCCCACATCCTCAAGTGTTCTGCCACCAATTACATGGGACTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCACATCCTCAAGTGTTCTGCCACCAATTACATGGGACTCTTA  550

seq1  CTTGAAATTATCAGCAGACGTCCTGTGACACATGGCAACTGGCCTCACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTATCAGCAGACGTCCTGTGACACATGGCAACTGGCCTCACGA  600

seq1  GGGGTCTCTACTTTCCATGGTGAGCCTCTTCCCGGTGCCTCGAGTTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTCTACTTTCCATGGTGAGCCTCTTCCCGGTGCCTCGAGTTGGAT  650

seq1  GCTTGAGCTCTGAAATCTCAGAAGCTTCTATGGAGGAATTTCAGAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCTCTGAAATCTCAGAAGCTTCTATGGAGGAATTTCAGAATCAA  700

seq1  ACCAGAGACTTCCCGGTACTGAGTTCCCAAATTGTTCCCATGTCAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACTTCCCGGTACTGAGTTCCCAAATTGTTCCCATGTCAGAAGA  750

seq1  TAATGATGTCACTATCTGATATACTAATAGCTTCTTGAGAGGAATTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTCACTATCTGATATACTAATAGCTTCTTGAGAGGAATTGAGA  800

seq1  GCACACGTCACGGTAAGAGGC-TTACCTCTGAAATTGTCTGCAAGTCAAG  849
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GCACACGTCACGGTAAGAGGCTTTACCTCTGAAATTGTCTGC-AGTCAAG  849

seq1  GCTTTGGGGGCCTGTTTGTTCCCTTCTGACCTCTATTCA-TTTGAGAAAG  898
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTTT-GGGGCCTGTTTGTTCCCTTCTGACCTCTATTCATTTTGAGAAAG  898

seq1  GTGGGATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTCATTTT  948
      ||||||||||||||||||||| |||||||||||||| |||||||||||| 
seq2  GTGGGATTTTATTTTATTTTA-TTTATTTTATTTTA-TTTATTTCATTTG  946

seq1  GAGATAGGATC-TCATGTAACCCAGGCTGCCCTTGAACTCACAATGTAGC  997
       ||||| |||| ||||||||||||||||| |||||||||||| |||||||
seq2  AAGATA-GATCTTCATGTAACCCAGGCTGGCCTTGAACTCAC-ATGTAGC  994

seq1  A-GGGGATATCTTTGAACTTCT  1018
      | ||||||||||||||||||||
seq2  AGGGGGATATCTTTGAACTTCT  1016