BAC Information

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BAC

Clone NameB6Ng01-109J06
Chromosome1 (Build37)
Map Location 90,128,830 - 90,129,058
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109J06.bB6Ng01-109J06.g
ACCDH916451DH916452
length1,135229
definitionDH916451|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J06, 5' end.DH916452|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactgaggtatcctgagtggctgagaaacacctaaagaaatg
ttcagcttccttagtcataaggaaaatgcaaatcaaaatgaccctatgat
tccaccttataccagtcagaatttctaagatcaaaaactcaggtgacaac
agatactggtgaagatgtggagaaagaggaacactcctaaattgctagtg
tgattgcaagctagtacaaccactttggaaatcaatctggagattcctca
taaaattggtgcaagctctacctgaagacccaggtataccactcctggac
ataaaatactcaaaagatgctccaacacataacaaagacacatgcttcac
tgtgttcaatgaagcctaatttataatagccaaaagctggaaacaaccag
aaagtttctcaatggaagaatggatacagaaaatgtgatacatttacaca
atggaatactaatagctattaaaaatgatgagatcatgaactttgtaggc
aaatggatggaactagaaaatatcatcttgagtgaggtaacccaaatcca
aaaggacatgcatggtatgtacacacttataagtggattctagcacaaaa
gctcagaatacccatgatccaaatcaaaaatcatatgaattttaatgaga
agtaagtaagggagaacaaaataaccatggcaggcagaggaagggggatc
tggctgggaggatgaaagtgaggggaagaaagaaagaaggacaggatcag
gtatgggaagagacaggagagacatctagagggccaggagaatgaataga
aatacgtagcagtgggtgttgtgggaatctggagaagcactagaaagtcc
cagatgccaggaattcaaacggttcccaggactcaatgggggataacagt
agatgatatacaaggggagatggaacctgaagagattacatcaagtagat
ggacatggccactcagttgagtgatgggggcaccccacccatctttaaaa
aaattaactgaagaatgtctctgtcttaaggaaattttagggacaaaaat
ggaacatgctgatgaaggccatccaaagaaaataccactggatttgatct
tacgattcaaaccacttccctattgctggatacca
atgccctacatgggcatcaccctggctaccatattcacgatgttgagact
tgccaacgaagccaagatgtgccaggtgatctgtagtggtgcgtgtctca
cttgggcctgtgggtcaagccttaaccagagggagaaagggggtgaggag
gggaataagggttttttgaatgatatcctggcttgcatcccagtggtggc
ttagctccgtctctgagtttgcttggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90128830_90129058
seq2: B6Ng01-109J06.g_72_300

seq1  ATGCCCTACATGGGCATCACCCTGGCTACCATATTCACGATGTTGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACATGGGCATCACCCTGGCTACCATATTCACGATGTTGAGACT  50

seq1  TGCCAACGAAGCCAAGATGCGCCAGGTGATCTGTAGTGGTGCGTGTCTCA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCCAACGAAGCCAAGATGTGCCAGGTGATCTGTAGTGGTGCGTGTCTCA  100

seq1  CTTGGGCCTGTGGGTCAAGCCTTAACCAGAGGGATAAAGGGGGTGAGGAG  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGGGCCTGTGGGTCAAGCCTTAACCAGAGGGAGAAAGGGGGTGAGGAG  150

seq1  GGGAATAAGGGTTTATTGAATGAGAAGTTGGTTTGCATCCCAGTGGTTGC  200
      |||||||||||||| |||||||| |   ||| ||||||||||||||| ||
seq2  GGGAATAAGGGTTTTTTGAATGATATCCTGGCTTGCATCCCAGTGGTGGC  200

seq1  TTTGCTCAGTCTCTGAGTTTGTTTGGTTC  229
      || |||| ||||||||||||| |||||||
seq2  TTAGCTCCGTCTCTGAGTTTGCTTGGTTC  229