BAC Information

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BAC

Clone NameB6Ng01-110D20
Chromosome1 (Build37)
Map Location 153,824,694 - 153,984,655
singlet/doubletdoublet
Overlap gene1700025G04Rik, LOC668076
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D20.bB6Ng01-110D20.g
ACCDH916919DH916920
length1,1291,135
definitionDH916919|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D20, 5' end.DH916920|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,824,694 - 153,825,841)(153,983,523 - 153,984,655)
sequence
gaattcaattaaacagcaagcttttaataacccgccttcatcaagacttt
tcaaagcattccatttaaatttcactgtaacagctctctccatgctggtg
tttcactggcttgcatattatttaactaaattacataattacaatgacat
tcaaccagcacaaaccggtttgagaaccagcacacctctggctctgggaa
acgggaaaaatcagatgaacaaaagctcaagtgtgtttagggggcagccc
accagagccccagtgaagcatgccttgcggggcagtgtccttcaggcaca
caaagaaaatgcatctctaagtatgcacagtctagagcatggggaacagc
cttttgtatgcctgtgagggtctgtgctctactgtgaaccactgggtcta
ttcgtttctttttttaaagagatcaccctttccttgtatatttagaggta
ctctttatgtatctcagatatgagtcctttcactgtgttctgatcacaag
tgttttctccaaagctcctaaccacctccatcttgcggctattcagtttt
tcaaaaagaatttgactctgatatctgaaaagaaagctctccctttacag
ttcttgttaatctaagtcgccatgaagaaagtctccctttgccaagacct
gacatagctttccctatattttcttctaattctctaattctgaactccag
aagcttaaggcccaacttttaaagctagaaaaggagaatctggaatccag
gttgccacttgtgtctgaatagctttttgatggttaaaaaagaaaagcaa
atcaatctactacttcaccttgcttaaggaggtaagagtaagaaccaacg
tagaatatgcagatgtaaagcaatgacagaaatcagataaatgtctgctg
gtggattcttctggtgatggccacagacgatcatcagccatggaaactga
cggaaaggcttagtgacggagatcacagctttatggagtgactgctggca
gagtgtcctgcgagactggacactgacaacacacaaccatactaacagat
cacgagatcactcgactttggaagcatctgctcattcagaatcagacatc
tactctgttcccgagaatgcttgtgcact
gaattcactacagcttgaagaacagggcaagctgtattcagaggtcagct
gctggaatcagatgtttggccaagtttgccttctccagatttttaaaact
tccttttctctccaaagttcagttctcagagctaaaactgaagtgaggct
ttcagtgtttcaaaattgaatctaaaatataatgtgagtcttcattatga
ttgtaatttacaatgtgttttcttttatccaataatttttatcgggtaga
gaacctaagacttaatgagaggggttcataaaactacagaataaagaaca
ccaacttattgatccttcagacaaggcacttaaaatgctgtttatgtgtt
aaaataaatacacatctattattaaataaaattcacatgaattcctcaga
aaaattgcaagactctgaaacaaggccatgcctgaaaaacatactgtaaa
ggactagggagttggctaagtagattaggatatgggttgctctcgcagaa
gacccagggtcagttcccagcacccatatggtagctcacagccatgtgta
actatgtgagtagtttcgcaggattcaatactttccatgggcactgggca
cacatatggtgcacatatgtgcatgcagaaaaaacacacatattaaataa
ataaagtatttttcaaagcatactatgagctttgccctacagtcgcttag
ggatgaaggtactagagaaacagaatagcctagggaaacatttttctctc
tctttgccccccaagccctaaaatagacagtaagcaacatgtgtaggctt
agatttttcaaaacctactttaaaataaagggctctcaaatgttttgacc
cccttttctagcctactatccaaggtagggggagaaaaagatggtaaata
gggacagggaatgaggacttatttagaagtagttcttttggggcgattcc
attcttgtttgtcagaataccagcagtccagttcaaaagtgtcaaggtac
cacagtccagtttaaaagtgtcaccaacacaaatcagcatggcgcaagta
atcagcaaaaacttgcaggctttccatcaatggacacagtcagtgggaat
gttccagaccagcgggaatgccagagagccctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153824694_153825841
seq2: B6Ng01-110D20.b_43_1171

seq1  GAATTCAATTAAACAGCAAGCTTTTAATAACCCGCCTTCATCAAGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAACAGCAAGCTTTTAATAACCCGCCTTCATCAAGACTTT  50

seq1  TCAAAGCATTCCATTTAAATTTCACTGTAACAGCTCTCTCCATGCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCATTCCATTTAAATTTCACTGTAACAGCTCTCTCCATGCTGGTG  100

seq1  TTTCACTGGCTTGCATATTATTTAACTAAATTACATAATTACAATGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGCTTGCATATTATTTAACTAAATTACATAATTACAATGACAT  150

seq1  TCAACCAGCACAAACCGGTTTGAGAACCAGCACACCTCTGGCTCTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGCACAAACCGGTTTGAGAACCAGCACACCTCTGGCTCTGGGAA  200

seq1  ACGGGAAAAATCAGATGAACAAAAGCTCAAGTGTGTTTAGGGGGCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAAATCAGATGAACAAAAGCTCAAGTGTGTTTAGGGGGCAGCCC  250

seq1  ACCAGAGCCCCAGTGAAGCATGCCTTGCGGGGCAGTGTCCTTCAGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCCCCAGTGAAGCATGCCTTGCGGGGCAGTGTCCTTCAGGCACA  300

seq1  CAAAGAAAATGCATCTCTAAGTATGCACAGTCTAGAGCATGGGGAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGCATCTCTAAGTATGCACAGTCTAGAGCATGGGGAACAGC  350

seq1  CTTTTGTATGCCTGTGAGGGTCTGTGCTCTACTGTGAACCACTGGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTATGCCTGTGAGGGTCTGTGCTCTACTGTGAACCACTGGGTCTA  400

seq1  TTCGTTTCTTTTTTTAAAGAGATCACCCTTTCCTTGTATATTTAGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTCTTTTTTTAAAGAGATCACCCTTTCCTTGTATATTTAGAGGTA  450

seq1  CTCTTTATGTATCTCAGATATGAGTCCTTTCACTGTGTTCTGATCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATGTATCTCAGATATGAGTCCTTTCACTGTGTTCTGATCACAAG  500

seq1  TGTTTTCTCCAAAGCTCCTAACCACCTCCATCTTGCGGCTATTCAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCCAAAGCTCCTAACCACCTCCATCTTGCGGCTATTCAGTTTT  550

seq1  TCAAAAAGAATTTGACTCTGATATCTGAAAAGAAAGCTCTCCCTTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAATTTGACTCTGATATCTGAAAAGAAAGCTCTCCCTTTACAG  600

seq1  TTCTTGTTAATCTAAGTCGCCATGAAGAAAGTCTCCCTTTGCCAAGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTAATCTAAGTCGCCATGAAGAAAGTCTCCCTTTGCCAAGACCT  650

seq1  GACATAGCTTTCCCTATATTTTCTTCTAATTCTCTAATTCTGAACTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCTTTCCCTATATTTTCTTCTAATTCTCTAATTCTGAACTCCAG  700

seq1  AAGCTTAAGGCCCAACTTTTAAAGCTAGAAAAGGAGAATCTGGAATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAGGCCCAACTTTTAAAGCTAGAAAAGGAGAATCTGGAATCCAG  750

seq1  GTTGCCACTTGTGTCTGAATAGCTTTTTGATGGTTAAAAAAGAAAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCACTTGTGTCTGAATAGCTTTTTGATGGTTAAAAAAGAAAAGCAA  800

seq1  ATCAATCTACTACTTCACCTTGCTTAAGGAGGTAAGAGTAAGAACCAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTACTACTTCACCTTGCTTAAGGAGGTAAGAGTAAGAACCAACG  850

seq1  TAGAATATGCAGATGTAAAGCAATGACAGAAATCAGGATAAATGTCTGCT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGAATATGCAGATGTAAAGCAATGACAGAAATCA-GATAAATGTCTGCT  899

seq1  -GTGGATTCTTCT-GTGATGGCCACAGACGAATCATCAGCCATGGAAACT  948
       |||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  GGTGGATTCTTCTGGTGATGGCCACAGACG-ATCATCAGCCATGGAAACT  948

seq1  GACGGAAAGGCTTAAGTGACGGGAGATCACAAGCTTTATGGAGTGACTGC  998
      ||||||||||||| |||||| ||||||||| |||||||||||||||||||
seq2  GACGGAAAGGCTT-AGTGAC-GGAGATCAC-AGCTTTATGGAGTGACTGC  995

seq1  TGGGCAGAGTGTCCTGCGAGACTGGACACTGACCAACACACACACCATAC  1048
      | |||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  T-GGCAGAGTGTCCTGCGAGACTGGACACTGA-CAACACACA-ACCATAC  1042

seq1  TAACAGATCACCGAGAATCACTTCGAACTTTGGAAAGCATCCTGCTCATT  1098
      |||||||||| |||| ||||| ||| ||||||| |||||| |||||||||
seq2  TAACAGATCA-CGAG-ATCAC-TCG-ACTTTGG-AAGCAT-CTGCTCATT  1086

seq1  CCAGAATCAAAGACATCTAACTCCTGTTCCCACGAGAATGCTTGTGCACT  1148
       |||||||  |||||||| ||| |||||||  ||||||||||||||||||
seq2  -CAGAATC--AGACATCT-ACT-CTGTTCC--CGAGAATGCTTGTGCACT  1129

seq1: chr1_153983523_153984655
seq2: B6Ng01-110D20.g_67_1201 (reverse)

seq1  CAGAGAGCTC-CTGGCATTCCGGCTGGTCCTGGACATTCTCACTGACTTG  49
      ||||| |||| |||||||||| |||||||  | |||||| ||||||| ||
seq2  CAGAGGGCTCTCTGGCATTCCCGCTGGTCTGGAACATTCCCACTGAC-TG  49

seq1  TGCCAATTTGGTGG-AAGCCTGGCAGTTTCTGCTGGAT-CATGCGGCCAT  97
      || | | ||| ||| |||||||  ||||| |||||  | | ||| |||| 
seq2  TGTCCA-TTGATGGAAAGCCTGCAAGTTTTTGCTGATTACTTGC-GCCA-  96

seq1  TGCTGATTTGTGTTTGGTGACACTTTTAAACTGGACTGTTGGTACCTTGA  147
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TGCTGATTTGTG-TTGGTGACACTTTTAAACTGGACTG-TGGTACCTTGA  144

seq1  CACTTTTGAACTGGACTGCTGGTATTCTGACAAACAAGATTGGAATCGCC  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTTTTGAACTGGACTGCTGGTATTCTGACAAACAAGAATGGAATCGCC  194

seq1  CC-AAAGAACTACTTCTAAATAGGTCCTCATTCCCTTGTCCTATTTACCA  246
      || ||||||||||||||||||| |||||||||||||   |||||||||||
seq2  CCAAAAGAACTACTTCTAAATAAGTCCTCATTCCCTGTCCCTATTTACCA  244

seq1  TC-TTTTCT-CCCCTACCTTTGGATAGTAGGCTAG-AAAGGGGGTCAAAA  293
      || |||||| |||||||| |||||||||||||||| ||||||||||||||
seq2  TCTTTTTCTCCCCCTACC-TTGGATAGTAGGCTAGAAAAGGGGGTCAAAA  293

seq1  CATTTGAGAGCCC-TTATTTTAAAGTAGGTTTTGAAAAATCTAAGCCTAC  342
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGAGCCCTTTATTTTAAAGTAGGTTTTGAAAAATCTAAGCCTAC  343

seq1  ACATGTTGCTTACTGTCTATTTTAGGGCTTGGGGGGCAAAGAGAGAGAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGCTTACTGTCTATTTTAGGGCTTGGGGGGCAAAGAGAGAGAAA  393

seq1  AATGTTTCCCTAGGCTATTCTGTTTCTCTAGTACCTTCATCCCTAAGCGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCCCTAGGCTATTCTGTTTCTCTAGTACCTTCATCCCTAAGCGA  443

seq1  CTGTA-GGCAAAGCTCATAGTATGCTTTGAAAAATACTTTATTTATTTAA  491
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGCAAAGCTCATAGTATGCTTTGAAAAATACTTTATTTATTTAA  493

seq1  TATGTGTGTTTTTTCTGCATGCACATATGTGCACCATATGTGTGCCCAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTTTTTTCTGCATGCACATATGTGCACCATATGTGTGCCCAGT  543

seq1  GCCCATGGAAAGTATTGAATCCTGCGAAACTACTCACATAGTTACACATG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGAAAGTATTGAATCCTGCGAAACTACTCACATAGTTACACATG  593

seq1  GCTGTGAGCTACCATATGGGTGCTGGGAACTGACCCTGGGTCTTCTGCGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGCTACCATATGGGTGCTGGGAACTGACCCTGGGTCTTCTGCGA  643

seq1  GAGCAACCCATATCCTAATCTACTTAGCCAACTCCCTAGTCCTTTACAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACCCATATCCTAATCTACTTAGCCAACTCCCTAGTCCTTTACAGT  693

seq1  ATGTTTTTCAGGCATGGCCTTGTTTCAGAGTCTTGCAATTTTTCTGAGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCAGGCATGGCCTTGTTTCAGAGTCTTGCAATTTTTCTGAGGA  743

seq1  ATTCATGTGAATTTTATTTAATAATAGATGTGTATTTATTTTAACACATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTGAATTTTATTTAATAATAGATGTGTATTTATTTTAACACATA  793

seq1  AACAGCATTTTAAGTGCCTTGTCTGAAGGATCAATAAGTTGGTGTTCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATTTTAAGTGCCTTGTCTGAAGGATCAATAAGTTGGTGTTCTTT  843

seq1  ATTCTGTAGTTTTATGAACCCCTCTCATTAAGTCTTAGGTTCTCTACCCG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGTTTTATGAACCCCTCTCATTAAGTCTTAGGTTCTCTACCCG  893

seq1  ATAAAAATTATTGGATAAAAGAAAACACATTGTAAATTACAATCATAATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTATTGGATAAAAGAAAACACATTGTAAATTACAATCATAATG  943

seq1  AAGACTCACATTATATTTTAGATTCAATTTTGAAACACTGAAAGCCTCAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCACATTATATTTTAGATTCAATTTTGAAACACTGAAAGCCTCAC  993

seq1  TTCAGTTTTAGCTCTGAGAACTGAACTTTGGAGAGAAAAGGAAGTTTTAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTAGCTCTGAGAACTGAACTTTGGAGAGAAAAGGAAGTTTTAA  1043

seq1  AAATCTGGAGAAGGCAAACTTGGCCAAACATCTGATTCCAGCAGCTGACC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGAGAAGGCAAACTTGGCCAAACATCTGATTCCAGCAGCTGACC  1093

seq1  TCTGAATACAGCTTGCCCTGTTCTTCAAGCTGTAGTGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATACAGCTTGCCCTGTTCTTCAAGCTGTAGTGAATTC  1135