BAC Information

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BAC

Clone NameB6Ng01-111D06
Chromosome1 (Build37)
Map Location 79,932,862 - 80,087,853
singlet/doubletdoublet
Overlap geneEG433326, LOC665064
Upstream geneEG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
Downstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D06.bB6Ng01-111D06.g
ACCDH917613DH917614
length1,1061,105
definitionDH917613|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D06, 5' end.DH917614|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,932,862 - 79,933,985)(80,086,737 - 80,087,853)
sequence
gaattcaagaaataaaagatatggccttgtgtgggactgtttgcagtttg
gttgtatctgacccaagctttcctttattgatgtgttacagggaggacac
ccctttggggatgaatcacatcctgctttggtaatgtgataggatgtttt
aaagagcacatggaccattgctgaatttggctagaaatgactatactctt
tattgctctttcaacttgagcaagttagttgtgttgggataagagctctg
tgggtgtgtggtcagagacatgaaagaaatgggtgaggtgaggtttccat
gaagagtgggttgtgattctacaggggcaatgacaaaggaaaatgaccct
ggtcatagctggaagggctggagaggaacaggcaaatcacgagaggtttg
cagtgtggttggaaggggttatccaaaccaggagagaatccagaatgtag
taagcagagacagcatttaaataagtattaagtctttaaagatgataatg
gggtcaatctgactctgctctgagtttatttccctcttaccagtgagaca
aacaacaccagggcaaaggactgagcagaacatagcacagctcagagctg
aaaaaaacggaaccccaaagcccttctgggaggatactggatctgctatg
acagcagaacccaatggtcaggcaccaagtgtttaaagaagaccgtgcca
caggacagtgtctgcttatcatatcacagttcatggaatcccaagtgcag
tgttccctacaggaaacatccaaccaaataagaaaatgtattgttgggag
ccgcgcccacattcgccgttacaagatggcgctgacagctgtgttctaag
tggtaaacaaataatctgcgcatgtgccgagggtggttcttcactccatg
tgctctgccttccccgtgacgtcactcggccgatgggctgcagccaatca
gggagtgacacgtcctagcgaagaaattctctttatatggacggggtttc
ggtttctctctctctgctctcgcctcgctctgctctgcactctgctctga
aaatgtaagcataaagctttgccgcagagaatcctgtctgtgtgttctct
gccggt
gaattctataatctgctttgaagcaacaggacttttgatctggtagtgtg
cattctgtatctatgtgtaccctcaagagaatgaggtctatgtaactata
tcaccaggaagtgtaattgaagggcctctaatatcacttttgtgtttatt
gattaaatataggagcacattccttagaaaattgctctcatgcaatctca
gtcttccggagatacccactgtcaacagagtagagtctattctgacaggt
tatttctatgcatatattaagcaaatggaatgcacatgcacagaaatagg
tttcatactgaaactgagccatccacaatcttgcacaaaagcttatttat
tccattaccagggcacttcaaatacattaaatataattgtggaaaacaga
gcatagagttgttaccgaaaatcatgactgaagggggtgagacctgatta
catttctaaggagacttagatgatactaatgactattccagagctgtgcc
ttagaatcagttatattttataaactcacttcttttttgagtgcgacaaa
tgttggtgtagaaccggccatcatgcaagtctgatgaccacagcagtcgc
ctacaactggtgaaatatgcacatcgctttggaacaccgtctgtcacagt
ccccagtttcaagaaggttgaattttgatattattttcagctctttagca
ggatgtgaatcagactggaaaatattagaacagggtctaattaatattag
attaagaacagaaattccaagaaaccccactgaaaatactgttttgtctg
aattcttcaggtctgtttttgaaattacaattattaagccattcacattc
tgaactttgacatagatttaataagtaattaaattggcaccatcaagttc
agaggatgagaccgtatggagagcagacactcagtggaaggcccttgctt
gccatggtcacatcactgtgtttttaccagtactacataaagaatattgt
ttgatatctttttgaccaagttctgaagctgagtctgagccagatgtggc
gaggctttatattctctttgaaagtgttagtgcacgaattctgtccaggt
cactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79932862_79933985
seq2: B6Ng01-111D06.b_50_1155

seq1  GAATTCAAGAAATAAAAGATATGGCCTTGTGTGGGACTGTTTGCAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATAAAAGATATGGCCTTGTGTGGGACTGTTTGCAGTTTG  50

seq1  GTTGTATCTGACCCAAGCTTTCCTTTATTGATGTGTTACAGGGAGGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCTGACCCAAGCTTTCCTTTATTGATGTGTTACAGGGAGGACAC  100

seq1  CCCTTTGGGGATGAATCACATCCTGCTTTGGTAATGTGATAGGATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGGGATGAATCACATCCTGCTTTGGTAATGTGATAGGATGTTTT  150

seq1  AAAGAGCACATGGACCATTGCTGAATTTGGCTAGAAATGACTATACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCACATGGACCATTGCTGAATTTGGCTAGAAATGACTATACTCTT  200

seq1  TATTGCTCTTTCAACTTGAGCAAGTTAGTTGTGTTGGGATAAGAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCTTTCAACTTGAGCAAGTTAGTTGTGTTGGGATAAGAGCTCTG  250

seq1  TGGGTGTGTGGTCAGAGACATGAAAGAAATGGGTGAGGTGAGGTTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGTGGTCAGAGACATGAAAGAAATGGGTGAGGTGAGGTTTCCAT  300

seq1  GAAGAGTGGGTTGTGATTCTACAGGGGCAATGACAAAGGAAAATGACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGGGTTGTGATTCTACAGGGGCAATGACAAAGGAAAATGACCCT  350

seq1  GGTCATAGCTGGAAGGGCTGGAGAGGAACAGGCAAATCACGAGAGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGCTGGAAGGGCTGGAGAGGAACAGGCAAATCACGAGAGGTTTG  400

seq1  CAGTGTGGTTGGAAGGGGTTATCCAAACCAGGAGAGAATCCAGAATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGTTGGAAGGGGTTATCCAAACCAGGAGAGAATCCAGAATGTAG  450

seq1  TAAGCAGAGACAGCATTTAAATAAGTATTAAGTCTTTAAAGATGATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAGACAGCATTTAAATAAGTATTAAGTCTTTAAAGATGATAATG  500

seq1  GGGTCAATCTGACTCTGCTCTGAGTTTATTTCCCTCTTACCAGTGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATCTGACTCTGCTCTGAGTTTATTTCCCTCTTACCAGTGAGACA  550

seq1  AACAACACCAGGGCAAAGGACTGAGCAGAACATAGCACAGCTCAGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACCAGGGCAAAGGACTGAGCAGAACATAGCACAGCTCAGAGCTG  600

seq1  AAAAAAACGGAACCCCAAAGCCCTTCTGGGAGGATACTGGATCTGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACGGAACCCCAAAGCCCTTCTGGGAGGATACTGGATCTGCTATG  650

seq1  ACAGCAGAACCCAATGGTCAGGCACCAAGTGTTTAAAGAAGACCGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAACCCAATGGTCAGGCACCAAGTGTTTAAAGAAGACCGTGCCA  700

seq1  CAGGACAGTGTCTGCTTATCATATCACAGTTCATGGAATCCCAAGTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGACAGTGTCTGCTTATCATATCACAGTTCATGGAATCCCAAGTGCA-  749

seq1  GTGTTCCCTACAGGAAACATCCAACCAAATAAGAAAATGTATTGTTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTACAGGAAACATCCAACCAAATAAGAAAATGTATTGTTGGGA  799

seq1  GCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAA  849

seq1  GTGGTAAACAAATAATCTGCGCATGTGCCGAGGGTGGTTCTTCACTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAACAAATAATCTGCGCATGTGCCGAGGGTGGTTCTTCACTCCAT  899

seq1  GTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAAT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGCTCTGCCTTCCCCGTGACGTC-ACTCGGCCGATGGGCTGCAGCCAAT  948

seq1  CAGGGAGTGACACGTCCTAGGCGAAGGAGAATTCTCTTTAATAGGGACGG  1000
      ||||||||||||||||||| ||||||   |||||||||| ||| ||||||
seq2  CAGGGAGTGACACGTCCTA-GCGAAG--AAATTCTCTTT-ATATGGACGG  994

seq1  GGTTTCGTTTTCTCTCTCTCTTGCTTCTCG-CTCGCTCTTGCTTCTTGCA  1049
      ||||||| |||||||||||| ||| ||||| ||||||| ||||   ||||
seq2  GGTTTCGGTTTCTCTCTCTC-TGC-TCTCGCCTCGCTC-TGCT--CTGCA  1039

seq1  CTCCTGCTCCTGAAAATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTG  1099
      || ||||| |||||||||||||| ||||||||||||||||| ||| ||  
seq2  CT-CTGCT-CTGAAAATGTAAGC-ATAAAGCTTTGCCGCAG-AGAATCCT  1085

seq1  GTCTGTGGTGTTCTTCCTGGCCGGT  1124
      |||||| |||||||  || ||||||
seq2  GTCTGT-GTGTTCT--CT-GCCGGT  1106

seq1: chr1_80086737_80087853
seq2: B6Ng01-111D06.g_67_1171 (reverse)

seq1  GAGTGACCTGGAACAGA--TCGTGCACTAACACTTTCAAAGAGAATATAC  48
      ||||||||||| |||||  |||||||||||||||||||||||||||||| 
seq2  GAGTGACCTGG-ACAGAATTCGTGCACTAACACTTTCAAAGAGAATATAA  49

seq1  AGCCTCGCCAACATCTTGGCCTCAGACTTCAGCTTCTAGAACTTTGGTCA  98
      ||||||||| ||||||  | ||||||| |||||||| ||||| |||||||
seq2  AGCCTCGCC-ACATCT--GGCTCAGAC-TCAGCTTC-AGAAC-TTGGTCA  93

seq1  AAAAGATTATTCAAACAATATTTCTTTATTGTAGTACTGGTAAATAAACA  148
      |||||||   |||||||||| ||||||| ||||||||||||||  |||||
seq2  AAAAGAT--ATCAAACAATA-TTCTTTA-TGTAGTACTGGTAA--AAACA  137

seq1  CAGTGATGTGACCATGGCAAGCAAGGGCCTTCCACTGAGTGTCTGCTCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGTGACCATGGCAAGCAAGGGCCTTCCACTGAGTGTCTGCTCTC  187

seq1  CATACGGTCTCATCCTCTGAACTTGATGGTGCCAATTTAATTACTTATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGGTCTCATCCTCTGAACTTGATGGTGCCAATTTAATTACTTATTA  237

seq1  AATCTATGTCAAAGTTCAGAATGTGAATGGCTTAATAATTGTAATTTTCA  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCTATGTCAAAGTTCAGAATGTGAATGGCTTAATAATTGTAA-TTTCA  286

seq1  AAAACAGACCTGAAGAATTCAGACAAAACAGTATTTTCAGTGGGGTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCTGAAGAATTCAGACAAAACAGTATTTTCAGTGGGGTTTCT  336

seq1  TGGAATTTCTGTTCTTAATCTAATATTAATTAGACCCTGTTCTAATATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTCTGTTCTTAATCTAATATTAATTAGACCCTGTTCTAATATTT  386

seq1  TCCAGTCTGATTCACATCCTGCTAAAGAGCTGAAAATAATATCAAAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGATTCACATCCTGCTAAAGAGCTGAAAATAATATCAAAATTC  436

seq1  AACCTTCTTGAAACTGGGGACTGTGACAGACGGTGTTCCAAAGCGATGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTTGAAACTGGGGACTGTGACAGACGGTGTTCCAAAGCGATGTG  486

seq1  CATATTTCACCAGTTGTAGGCGACTGCTGTGGTCATCAGACTTGCATGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCACCAGTTGTAGGCGACTGCTGTGGTCATCAGACTTGCATGAT  536

seq1  GGCCGGTTCTACACCAACATTTGTCGCACTCAAAAAAGAAGTGAGTTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGTTCTACACCAACATTTGTCGCACTCAAAAAAGAAGTGAGTTTAT  586

seq1  AAAATATAACTGATTCTAAGGCACAGCTCTGGAATAGTCATTAGTATCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACTGATTCTAAGGCACAGCTCTGGAATAGTCATTAGTATCAT  636

seq1  CTAAGTCTCCTTAGAAATGTAATCAGGTCTCACCCCCTTCAGTCATGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTCCTTAGAAATGTAATCAGGTCTCACCCCCTTCAGTCATGATT  686

seq1  TTCGGTAACAACTCTATGCTCTGTTTTCCACAATTATATTTAATGTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAACAACTCTATGCTCTGTTTTCCACAATTATATTTAATGTATTT  736

seq1  GAAGTGCCCTGGTAATGGAATAAATAAGCTTTTGTGCAAGATTGTGGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCCTGGTAATGGAATAAATAAGCTTTTGTGCAAGATTGTGGATG  786

seq1  GCTCAGTTTCAGTATGAAACCTATTTCTGTGCATGTGCATTCCATTTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTCAGTATGAAACCTATTTCTGTGCATGTGCATTCCATTTGCT  836

seq1  TAATATATGCATAGAAATAACCTGTCAGAATAGACTCTACTCTGTTGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGCATAGAAATAACCTGTCAGAATAGACTCTACTCTGTTGACA  886

seq1  GTGGGTATCTCCGGAAGACTGAGATTGCATGAGAGCAATTTTCTAAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATCTCCGGAAGACTGAGATTGCATGAGAGCAATTTTCTAAGGAA  936

seq1  TGTGCTCCTATATTTAATCAATAAACACAAAAGTGATATTAGAGGCCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTATATTTAATCAATAAACACAAAAGTGATATTAGAGGCCCTT  986

seq1  CAATTACACTTCCTGGTGATATAGTTACATAGACCTCATTCTCTTGAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACACTTCCTGGTGATATAGTTACATAGACCTCATTCTCTTGAGGG  1036

seq1  TACACATAGATACAGAATGCACACTACCAGATCAAAAGTCCTGTTGCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAGATACAGAATGCACACTACCAGATCAAAAGTCCTGTTGCTTC  1086

seq1  AAAGCAGATTATAGAATTC  1117
      |||||||||||||||||||
seq2  AAAGCAGATTATAGAATTC  1105