BAC Information

Click to search

BAC

Clone NameB6Ng01-111N22
Chromosome1 (Build37)
Map Location 92,563,087 - 92,723,004
singlet/doubletdoublet
Overlap geneCol6a3
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N22.bB6Ng01-111N22.g
ACCDH918092DH918093
length1,0681,169
definitionDH918092|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N22, 5' end.DH918093|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,721,939 - 92,723,004)(92,563,087 - 92,564,287)
sequence
gaattctcagagtcacaggatgagacaccggactgtccttaagacagttg
agcgtgtatggaaggtacagccagaattgtatttaagagggcgtttggaa
tcatgaagttggagaattggaggggttgcccatgaggctggaagggcaac
ctatgccctctagagaggtctcctatgggaggggctgaagagcacaatgg
gttcttgactagggaaagagtgatcttgcagccaggactcaggaggcatg
gcatatacagcccagaggaggtggtagagggagtcaagttcacaggtagc
ttttcccttctgccaagagaatgactgaggcagggggctggaggtaaagc
atccggtgaagccagtctccttcaaggaagatgctaaggagtgagatgaa
gatgcagtagagaggtagagacatgagtcaagcactctaaggagcatgtg
ggacacttaggggagacagatggaacaggtggcaagcctttgggattata
atcagatcaataggcagctctaagaaaacaatgtcagaccagtttcatca
cagggatttagaaaaagacaggcgaagagagaggtggtatgtgtcagcag
aaagaaacctgttgccatggacatgcaaggcttcggtatatagggctgtg
ggaatgacacatcctaaggagctgtttctgaaggctgctcttcctttggc
ttccccatggttccccatgatctcagccttggtaggattggggtcaccaa
ggtctaccaaatgacagagaggagactacctgggcccacttatctgtact
actagggttccctgcttcgggggttgagggcgtgtctctcctctggcact
gctttacaattgccaggttataggaaacaaatatgtattctagggatcca
cctggatggttattccagtttcagagggattgccaggtgggcacttgggc
agccgtgtgtgttcaccagagtctcctgacccaactcctttcacatatgg
tattaatggcatacctcaattggaaaacgtggttagtagagaatggcccg
tttttaaagttaatgtgt
gaattctaggatgttcttcagaggaaactcatggcaggggagaaggggag
ctggagcaaagaatggagagcagccatgataacttctttagctctacagc
atttctgcaggaccagccactcagccatcccttggagccagctgcacagg
gaacaaagggtgccaccctgtcaccagccttgttccagggaccttcttct
tggtttcacctggctgtatctttgaacgcgtagccacttggtttctcttt
tcttgggttctcaacaggtgtctccagaccacgcagcagagagccagtca
tcatgaggaacacataagctccttattggaagctcttatcactctgtaac
agggccagctagatgctattcttggcttgagagatccctgtgtcgtcttt
tgccctgttgacagagcacagactcccagaaccaggaaggttaatgagaa
gggaggtatctgtctgtatgtgtctcttccatcctccaccattctcatcc
cctcaggccagaccaggcagccattccctagcctttgctgatgcctttgg
ctttggctttgtgtctggcttcggttctgtttgttaagctgtcagataaa
gtggaaaaattaacttcatagcttctgagaatcaaattcacaattatgac
cgagtccaacgaggctgttctcaggaaatgcttgagtctagatcccagct
caccttgttaatcaaagaaggaaagaaatgttcatgaacccaacccagcg
ctttcctttccaagtacagctagatctgttggtgtccttctgagtctaca
tcaagccatttttacagaagttcagctacaggccagtgtttctcccctct
aactgggggaaaccatccacctctcagggtacttacctctgagaagccca
aacatgtgatgctggtaaaatgatctgctttttttttttttctgactttg
taaaatacaggtgcctagcctcaatcccaaccagtatgtctggagaaaca
gcaagtttgaactatcaatccacagcagctagccggattctttcgatggt
tcagggctctcttagccaggtcctgactccacgtttaatttgggaaggat
cgctcatggacttactgccttctggttcccttttccagccctcatgtcag
gatggcacgtagagtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92721939_92723004
seq2: B6Ng01-111N22.b_50_1117 (reverse)

seq1  ACACATTAACTTTAAAAACGGGCCATTCTCTACTAACCACGTTTTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  ACACATTAACTTTAAAAACGGGCCATTCTCTACTAACCACGTTTTCCAAT  50

seq1  TGA-GTATGCCATTATACCCATATTGTGAAAGGAG-TGGGTCA-GAGACT  97
      ||| |||||||||||   ||||| ||||||||||| ||||||| ||||||
seq2  TGAGGTATGCCATTAATACCATA-TGTGAAAGGAGTTGGGTCAGGAGACT  99

seq1  CTTGGTGGACACACACGGCTGCCCCAAGTGCCCCCTTGGCATTCCCTCTG  147
      | ||||| ||||||||||||| ||||||||||| | ||||| ||||||||
seq2  C-TGGTGAACACACACGGCTG-CCCAAGTGCCCACCTGGCAATCCCTCTG  147

seq1  AAACTGGAAT-ACCATCCAGGGTGATCCCTAGAATACATATTTGTTTCCT  196
      |||||||||| ||||||||||  |||||||||||||||||||||||||||
seq2  AAACTGGAATAACCATCCAGGTGGATCCCTAGAATACATATTTGTTTCCT  197

seq1  ATAACCTGGCAATTGTAAAGCAGTGCCAGAGGAGAGACACGCCCTCAACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGCAATTGTAAAGCAGTGCCAGAGGAGAGACACGCCCTCAACC  247

seq1  CCCGAAGCAGGGAACCCTAGTAGTACAGATAAGTGGG-CCAGGTAGTCTC  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCGAAGCAGGGAACCCTAGTAGTACAGATAAGTGGGCCCAGGTAGTCTC  297

seq1  CTCTCTGTCATTTGGTAGACCTTGGTGACCCCAATCCTACCAAGGCTGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCATTTGGTAGACCTTGGTGACCCCAATCCTACCAAGGCTGAG  347

seq1  ATCATGGGGAACCATGGGGAAGCCAAAGGAAGAGCAGCCTTCAGAAACAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGGAACCATGGGGAAGCCAAAGGAAGAGCAGCCTTCAGAAACAG  397

seq1  CTCCTTAGGATGTGTCATTCCCACAGCCCTATATACCGAAGCCTTGCATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGGATGTGTCATTCCCACAGCCCTATATACCGAAGCCTTGCATG  447

seq1  TCCATGGCAACAGGTTTCTTTCTGCTGACACATACCACCTCTCTCTTCGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCAACAGGTTTCTTTCTGCTGACACATACCACCTCTCTCTTCGC  497

seq1  CTGTCTTTTTCTAAATCCCTGTGATGAAACTGGTCTGACATTGTTTTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTCTAAATCCCTGTGATGAAACTGGTCTGACATTGTTTTCTT  547

seq1  AGAGCTGCCTATTGATCTGATTATAATCCCAAAGGCTTGCCACCTGTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCCTATTGATCTGATTATAATCCCAAAGGCTTGCCACCTGTTCC  597

seq1  ATCTGTCTCCCCTAAGTGTCCCACATGCTCCTTAGAGTGCTTGACTCATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCCCCTAAGTGTCCCACATGCTCCTTAGAGTGCTTGACTCATG  647

seq1  TCTCTACCTCTCTACTGCATCTTCATCTCACTCCTTAGCATCTTCCTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCTCTCTACTGCATCTTCATCTCACTCCTTAGCATCTTCCTTGA  697

seq1  AGGAGACTGGCTTCACCGGATGCTTTACCTCCAGCCCCCTGCCTCAGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGGCTTCACCGGATGCTTTACCTCCAGCCCCCTGCCTCAGTCA  747

seq1  TTCTCTTGGCAGAAGGGAAAAGCTACCTGTGAACTTGACTCCCTCTACCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGGCAGAAGGGAAAAGCTACCTGTGAACTTGACTCCCTCTACCA  797

seq1  CCTCCTCTGGGCTGTATATGCCATGCCTCCTGAGTCCTGGCTGCAAGATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTGGGCTGTATATGCCATGCCTCCTGAGTCCTGGCTGCAAGATC  847

seq1  ACTCTTTCCCTAGTCAAGAACCCATTGTGCTCTTCAGCCCCTCCCATAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCCTAGTCAAGAACCCATTGTGCTCTTCAGCCCCTCCCATAGG  897

seq1  AGACCTCTCTAGAGGGCATAGGTTGCCCTTCCAGCCTCATGGGCAACCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCTAGAGGGCATAGGTTGCCCTTCCAGCCTCATGGGCAACCCC  947

seq1  TCCAATTCTCCAACTTCATGATTCCAAACGCCCTCTTAAATACAATTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTCCAACTTCATGATTCCAAACGCCCTCTTAAATACAATTCTG  997

seq1  GCTGTACCTTCCATACACGCTCAACTGTCTTAAGGACAGTCCGGTGTCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCTTCCATACACGCTCAACTGTCTTAAGGACAGTCCGGTGTCTC  1047

seq1  ATCCTGTGACTCTGAGAATTC  1066
      |||||||||||||||||||||
seq2  ATCCTGTGACTCTGAGAATTC  1068

seq1: chr1_92563087_92564287
seq2: B6Ng01-111N22.g_69_1237

seq1  GAATTCTAGGATGTTCTTCAGAGGAAACTCATGGCAGGGGAGAAGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATGTTCTTCAGAGGAAACTCATGGCAGGGGAGAAGGGGAG  50

seq1  CTGGAGCAAAGAATGGAGAGCAGCCATGATAACTTCTTTAGCTCTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAAAGAATGGAGAGCAGCCATGATAACTTCTTTAGCTCTACAGC  100

seq1  ATTTCTGCAGGACCAGCCACTCAGCCATCCCTTGGAGCCAGCTGCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCAGGACCAGCCACTCAGCCATCCCTTGGAGCCAGCTGCACAGG  150

seq1  GAACAAAGGGTGCCACCCTGTCACCAGCCTTGTTCCAGGGACCTTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGGGTGCCACCCTGTCACCAGCCTTGTTCCAGGGACCTTCTTCT  200

seq1  TGGTTTCACCTGGCTGTATCTTTGAACGCGTAGCCACTTGGTTTCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCACCTGGCTGTATCTTTGAACGCGTAGCCACTTGGTTTCTCTTT  250

seq1  TCTTGGGTTCTCAACAGGTGTCTCCAGACCACGCAGCAGAGAGCCAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTCTCAACAGGTGTCTCCAGACCACGCAGCAGAGAGCCAGTCA  300

seq1  TCATGAGGAACACATAAGCTCCTTATTGGAAGCTCTTATCACTCTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGAACACATAAGCTCCTTATTGGAAGCTCTTATCACTCTGTAAC  350

seq1  AGGGCCAGCTAGATGCTATTCTTGGCTTGAGAGATCCCTGTGTCGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGCTAGATGCTATTCTTGGCTTGAGAGATCCCTGTGTCGTCTTT  400

seq1  TGCCCTGTTGACAGAGCACAGACTCCCAGAACCAGGAAGGTTAATGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTTGACAGAGCACAGACTCCCAGAACCAGGAAGGTTAATGAGAA  450

seq1  GGGAGGTATCTGTCTGTATGTGTCTCTTCCATCCTCCACCATTCTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTATCTGTCTGTATGTGTCTCTTCCATCCTCCACCATTCTCATCC  500

seq1  CCTCAGGCCAGACCAGGCAGCCATTCCCTAGCCTTTGCTGATGCCTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCCAGACCAGGCAGCCATTCCCTAGCCTTTGCTGATGCCTTTGG  550

seq1  CTTTGGCTTTGTGTCTGGCTTCGGTTCTGTTTGTTAAGCTGTCAGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTTTGTGTCTGGCTTCGGTTCTGTTTGTTAAGCTGTCAGATAAA  600

seq1  GTGGAAAAATTAACTTCATAGCTTCTGAGAATCAAATTCACAATTATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAATTAACTTCATAGCTTCTGAGAATCAAATTCACAATTATGAC  650

seq1  CGAGTCCAACGAGGCTGTTCTCAGGAAATGCTTGAGTCTAGATCCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCAACGAGGCTGTTCTCAGGAAATGCTTGAGTCTAGATCCCAGCT  700

seq1  CACCTTGTTAATCAAAGAAGGAAAGAAATGTTCATGAACCCAACCCAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTTAATCAAAGAAGGAAAGAAATGTTCATGAACCCAACCCAGCG  750

seq1  CTTTCCTTTCCAAGTACAGCTAGATCTGTTGGTGTCCTTCTGAGTCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCAAGTACAGCTAGATCTGTTGGTGTCCTTCTGAGTCTACA  800

seq1  TCAAGCCATTTTTACAGAAGTTCAGCTACAGGCCAGTGTTTCT-CCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAAGCCATTTTTACAGAAGTTCAGCTACAGGCCAGTGTTTCTCCCCTCT  850

seq1  AACTGGGGGAAACCATCCACCTCTCAGGGTACTTACCTCTGAG-AGCCCA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTGGGGGAAACCATCCACCTCTCAGGGTACTTACCTCTGAGAAGCCCA  900

seq1  AACATGTGATGCTGGTAAAATGGAATCTGC-TTTTTTTTTTTTCTGACTA  947
      ||||||||||||||||||||||  |||||| |||||||||||||||||| 
seq2  AACATGTGATGCTGGTAAAATG--ATCTGCTTTTTTTTTTTTTCTGACTT  948

seq1  TGTAAAATACAGGGTGCCTAGCCTCAATCCACACCAGTATGTCTGGAGAA  997
      ||||||||||| ||||||||||||||||||  ||||||||||||||||||
seq2  TGTAAAATACA-GGTGCCTAGCCTCAATCCCAACCAGTATGTCTGGAGAA  997

seq1  ACAGGCAAGGTTTTGAACCTATCAATCACACAGCAGGCTAGCCGGATTCT  1047
      ||| |||||  |||||| ||||||||| ||||||| ||||||||||||||
seq2  ACA-GCAAG--TTTGAA-CTATCAATC-CACAGCA-GCTAGCCGGATTCT  1041

seq1  TCAGTATGGTGTCAGGTGCTCCTCCTAGCCAGTGTCACTGACTTCCACTG  1097
      |  | ||||| ||||| ||| ||| ||||||| ||| ||||| ||||| |
seq2  TTCG-ATGGT-TCAGG-GCT-CTCTTAGCCAG-GTC-CTGAC-TCCAC-G  1083

seq1  TTGGGTAA-TTGGGAAGGAGTTCGGTCCTCCATGGGATCTTACTGCCTTT  1146
      ||   ||| ||||||||||  ||| |    |||||   |||||||||  |
seq2  TT---TAATTTGGGAAGGA--TCGCT----CATGG--ACTTACTGCC--T  1120

seq1  TCTGTGTCTCCTCTTCTTCCAGCCCTCAGTGTC-CCATGGCCACGTAGAT  1195
      |||| || ||| ||| |||||||||||| ||||   |||| |||||||| 
seq2  TCTG-GT-TCC-CTT-TTCCAGCCCTCA-TGTCAGGATGG-CACGTAGA-  1163

seq1  GTGGTT  1201
      ||||||
seq2  GTGGTT  1169