BAC Information

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BAC

Clone NameB6Ng01-112A14
Chromosome13 (Build37)1 (Build37)
Map Location 63,829,700 - 63,829,73597,433,240 - 97,434,056
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112A14.bB6Ng01-112A14.g
ACCDH918214DH918215
length410820
definitionDH918214|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A14, 5' end.DH918215|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,829,700 - 63,829,735)(97,433,240 - 97,434,056)
sequence
atccagcaactgatgggagcagattgatagtcctacagccaaacattggg
cagaggaaccagataggttaggcacacaccagaatatggcccacagaatc
aactgaactggactcatgggagctctcagagaacagggagcctgtagaga
tctgacctaggtcctctgaatgtatgttacggctgagtagcttggtattt
tgtggaactccgaacagtaggatctggggctatctctgactgttttgcct
acttgtggaaccctttgattcctgccgggttgcctcgttcagccttgaaa
taagagtgtgtgcctggtctgattgtagcttgtaatgccatatttggttg
ttgtctctgggaggcctgttttttgtttgtttgtttgtctgttttggttt
tgtttttaag
gaattctcagaaactcagtctccatatggacattagaacaactggaatga
agcatggcatctattcctcaacaaggcttccttttcctacctgagtggga
gaggatgctcctaacctagcagagacttgatgtgcctgggtgtggggaag
cctagaggggacaccctctcagaagagaagggtagggggatggaggagtg
tctcagtgtggaggcattgggaatggggcagagcttgggatgtaaataaa
taaataaataaataaataaatatttacaaagaaaggaacacagtctcatt
gtctcattgggtatttgggtaatccctaaagggtagaacttttcttagtg
attttaaatctggtgtattattctgatctcttgagcaactagatagatag
gtaggtaggaagacagacagatgagagattgatagatcgatgttataagt
ttaccactgatgtctaaatcctttgtaataaattacagcctaatatttga
ctcccacgctgcttctaatgatccatcactcaagaatgactgatggactt
catgatggctttgatctatggccatcttctgcatagcatttcatacaggt
actatagatgagtgtgtgtgggttacattgaatttcctaactcttctcag
tggccctccccccaaccccttttagaatctactgatgttgttatcccttg
attctagcccatcccctaccagtcagtgatacgttgtttgatttctcaaa
tttgttcttttacttctttgccacaagtcatgtggatcaacactacatgc
tcattagctctagtgtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63829700_63829735
seq2: B6Ng01-112A14.b_427_467 (reverse)

seq1  CTTAAAAACAAAACCAA-----GCAAACAAACAAACAAAAA  36
      |||||||||||||||||      ||||||||||||||||||
seq2  CTTAAAAACAAAACCAAAACAGACAAACAAACAAACAAAAA  41

seq1: chr1_97433240_97434056
seq2: B6Ng01-112A14.g_67_886 (reverse)

seq1  AATTACACTAGAGCTAATGAGCATGTAGTGTTGATCCACATGACTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACTAGAGCTAATGAGCATGTAGTGTTGATCCACATGACTTGTGG  50

seq1  CAAAGAAGTAAAAGAACAAATTTGAGAAATCAA--CACGTATCACTGACT  98
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CAAAGAAGTAAAAGAACAAATTTGAGAAATCAAACAACGTATCACTGACT  100

seq1  GGTAGGGGATGGGCTAGAATCAAGGGATAACAACATCAGTAGATTCT-AA  147
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTAGGGGATGGGCTAGAATCAAGGGATAACAACATCAGTAGATTCTAAA  150

seq1  AGGGGTTGGGGGGAGGGCCACTGAGAAGAGTTAGGAAATTCAATGTAACC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGGGGGAGGGCCACTGAGAAGAGTTAGGAAATTCAATGTAACC  200

seq1  CACACACACTCATCTATAGTACCTGTATGAAATGCTATGCAGAAGATGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCATCTATAGTACCTGTATGAAATGCTATGCAGAAGATGGC  250

seq1  CATAGATCAAAGCCATCATGAAGTCCATCAGTCATTCTTGAGTGATGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCAAAGCCATCATGAAGTCCATCAGTCATTCTTGAGTGATGGAT  300

seq1  CATTAGAAGCAGCGTGGGAGTCAAATATTAGGCTGTAATTTATTACAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAGCAGCGTGGGAGTCAAATATTAGGCTGTAATTTATTACAAAG  350

seq1  GATTTAGACATCAGTGGTAAACTTATAACATCGATCTATCAATCTCTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGACATCAGTGGTAAACTTATAACATCGATCTATCAATCTCTCAT  400

seq1  CTGTCTGTCTTCCTACCTACCTATCTATCTAGTTGCTCAAGAGATCAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTTCCTACCTACCTATCTATCTAGTTGCTCAAGAGATCAGAA  450

seq1  TAATACACCAGATTTAAAATCACTAAGAAAAGTTCTACCCTTTAGGGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACCAGATTTAAAATCACTAAGAAAAGTTCTACCCTTTAGGGATT  500

seq1  ACCCAAATACCCAATGAGACAATGAGACTGTGTTCCTTTCTTTGTAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATACCCAATGAGACAATGAGACTGTGTTCCTTTCTTTGTAAATA  550

seq1  TTTATTTATTTATTTATTTATTTATTTACATCCCAAGCTCTGCCCCATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTACATCCCAAGCTCTGCCCCATTC  600

seq1  CCAATGCCTCCACACTGAGACACTCCTCCATCCCCCTACCCTTCTCTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCTCCACACTGAGACACTCCTCCATCCCCCTACCCTTCTCTTCT  650

seq1  GAGAGGGTGTCCCCTCTAGGCTTCCCCACACCCAGGCACATCAAGTCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTGTCCCCTCTAGGCTTCCCCACACCCAGGCACATCAAGTCTCT  700

seq1  GCTAGGTTAGGAGCATCCTCTCCCACTCAGGTAGGAAAAGGAAGCCTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTAGGAGCATCCTCTCCCACTCAGGTAGGAAAAGGAAGCCTTGT  750

seq1  TGAGGAATAGATGCCATGCTTCATTCCAGTTGTTCTAATGTCCATATGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATAGATGCCATGCTTCATTCCAGTTGTTCTAATGTCCATATGGA  800

seq1  GACTGAGTTTCTGAGAATTC  817
      ||||||||||||||||||||
seq2  GACTGAGTTTCTGAGAATTC  820