BAC Information

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BAC

Clone NameB6Ng01-112F02
Chromosome1 (Build37)
Map Location 65,906,171 - 65,907,382
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112F02.bB6Ng01-112F02.g
ACCDH918413DH918414
length1,2201,204
definitionDH918413|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F02, 5' end.DH918414|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaatcgacaacaaaaggagatcaagggga
tacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaaacct
gataaacagctttggtgaagtagctggatataaaattaactcaaacaagt
caatggcctttctctacacaaagaataaacaggctgagaaagaaattagg
gaaacaacaccgttctcaatagtcacaaataatataaaatatctcggcgt
gactctaactaaggaagtaaaagatctgtatgataaaaacttcaagtctc
tgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaattcttca
acgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctttactacagggcaattgtgataaaaactgcat
ggtactggtatagagacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatctttcgacaagggag
ctaaaaccatccagtgaagaaagacagcattttcaacaattgtgctggca
caactggtgttatcatgtagaagatgcgatcgatccataactatcttctg
tactagtcaatctagtggatcagaacttcacataaacagagaaactgaaa
ctatagagagaaagtgggaagctgagattgggtacaggtaagatctgaac
gacagcatgcttgctctgtagatcgaaatgaaattggaactaatggactc
aagttcgcagcaagaactcgtcatagaaaaagacctccaagaacttggga
agagtagactctttctcatc
gaattcagggtatcaaagaggatgatcaaaatagggtagttaagattttt
tctccccagatattttctaaaattttcatataataattttacacagttat
caggaaaaagatggcatacataatatgtaccaataaaattaagataaata
ttatttttatctccctattatcatggcattttcaggctccacttctttct
tataattatcaagtatctactttgtcattgtaagttttattcctcctact
gagctttgaaaagaacttattatttcttcctaactgtattttgaagatta
cttcttctcccagaattcatctgtattatacattcactgtggctttctaa
acttaaatttgtatgcaatttcataaatgtatatgacatattatgattat
tctcttccttagatctgtcttattttcctcccacacttatcaaccccttt
tccaattcctatttgtctcttcccaatattcatgaagatgttacccgagt
ttcctgtggagagagtgtagtccaggtagatgatacagaacaaagcttat
cacctagcagcactgcacagtttagaatctgatgaatacttctttagtaa
agtgtcagaagactctgagaaaatctgctctctgtcctttctttgcctgt
ctcttctccacacttatgcaatgttttttcttcttaaaagtgttaatctt
aaacatcatgtaaaaatatttcagcttaatttgatcgaactcaatgaaaa
atatatcatgacattagggtatctgggcatccttggaaacaactttgagc
acactatgaatagaattgatcatcaaaatttgtttaggaattgaaaacac
acaaaaaataatcaaatatataaaatttatattgagcttaccaacatcaa
taaacagtggtctgaaaaacaatcctattttttgtttaggtgatcataca
atatctatctgaacatattcctctcaacttgaaatgtgaaagtagttagc
tagttggtaagagtagttgatagaagagtagctgtgtgcctggattaagg
atggcttctgccaaagatctgagatgggaacaagttatccaccttggaaa
attagcaaagtatctggcatgctgggacaaaattaaagggtaagaactac
tatgatgcctaaagtcttcaggtaatctatggttacctcgctccctagaa
tcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65906171_65907382
seq2: B6Ng01-112F02.g_68_1271

seq1  GAATTCAGGGTATCAAAGAGGATGATCAAAATAGGGTAGTTAAGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTATCAAAGAGGATGATCAAAATAGGGTAGTTAAGATTTTT  50

seq1  TCTCCCCAGATATTTTCTAAAATTTTCATATAATAATTTTACACAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGATATTTTCTAAAATTTTCATATAATAATTTTACACAGTTAT  100

seq1  CAGGAAAAAGATGGCATACATAATATGTACCAATAAAATTAAGATAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAGATGGCATACATAATATGTACCAATAAAATTAAGATAAATA  150

seq1  TTATTTTTATCTCCCTATTATCATGGCATTTTCAGGCTCCACTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATCTCCCTATTATCATGGCATTTTCAGGCTCCACTTCTTTCT  200

seq1  TATAATTATCAAGTATCTACTTTGTCATTGTAAGTTTTATTCCTCCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATCAAGTATCTACTTTGTCATTGTAAGTTTTATTCCTCCTACT  250

seq1  GAGCTTTGAAAAGAACTTATTATTTCTTCCTAACTGTATTTTGAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAAAAGAACTTATTATTTCTTCCTAACTGTATTTTGAAGATTA  300

seq1  CTTCTTCTCCCAGAATTCATCTGTATTATACATTCACTGTGGCTTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCCCAGAATTCATCTGTATTATACATTCACTGTGGCTTTCTAA  350

seq1  ACTTAAATTTGTATGCAATTTCATAAATGTATATGACATATTATGATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTTGTATGCAATTTCATAAATGTATATGACATATTATGATTAT  400

seq1  TCTCTTCCTTAGATCTGTCTTATTTTCCTCCCACACTTATCAACCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTAGATCTGTCTTATTTTCCTCCCACACTTATCAACCCCTTT  450

seq1  TCCAATTCCTATTTGTCTCTTCCCAATATTCATGAAGATGTTACCCGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCTATTTGTCTCTTCCCAATATTCATGAAGATGTTACCCGAGT  500

seq1  TTCCTGTGGAGAGAGTGTAGTCCAGGTAGATGATACAGAACAAAGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGAGAGAGTGTAGTCCAGGTAGATGATACAGAACAAAGCTTAT  550

seq1  CACCTAGCAGCACTGCACAGTTTAGAATCTGATGAATACTTCTTTAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCAGCACTGCACAGTTTAGAATCTGATGAATACTTCTTTAGTAA  600

seq1  AGTGTCAGAAGACTCTGAGAAAATCTGCTCTCTGTCCTTTCTTTGCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAAGACTCTGAGAAAATCTGCTCTCTGTCCTTTCTTTGCCTGT  650

seq1  CTCTTCTCCACACTTATGCAATGTTTTTTCTTCTTAAAAGTGTTAATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCACACTTATGCAATGTTTTTTCTTCTTAAAAGTGTTAATCTT  700

seq1  AAACATCATGTAAAAATATTTCAGCTTAATTTGATCGAACTCAATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATGTAAAAATATTTCAGCTTAATTTGATCGAACTCAATGAAAA  750

seq1  ATATATCATGACATTAGGGTATCTGGGCATCCTTGGAAACAACTTTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATGACATTAGGGTATCTGGGCATCCTTGGAAACAACTTTGAGC  800

seq1  ACACTATGAATAGAATTGATCATCAAAATTTGTTTAGGAATTGAAAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGAATAGAATTGATCATCAAAATTTGTTTAGGAATTGAAAACAC  850

seq1  ACAAAAAAATAATCAAATATATAAAATTTATATTGAGCTTACCAACATCA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-AAAAAATAATCAAATATATAAAATTTATATTGAGCTTACCAACATCA  899

seq1  ATAAACAGTGGTCTGACAAACAATCCTATTTTTTGTTTAGGTGATCATAC  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAAACAGTGGTCTGAAAAACAATCCTATTTTTTGTTTAGGTGATCATAC  949

seq1  AATATCTATCTGAACATATTCCTCTCAACTTGAAATGTGAAAGTAGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATCTGAACATATTCCTCTCAACTTGAAATGTGAAAGTAGTTAG  999

seq1  CTAGTTGGTAAAGAGTAGTTGATAG-AGAGTAGCTGTGTGCCTGGAATAA  1049
      ||||||||| ||||||||||||||| ||||||||||||||||||| || |
seq2  CTAGTTGGT-AAGAGTAGTTGATAGAAGAGTAGCTGTGTGCCTGG-ATTA  1047

seq1  AGGATGGCTTCTGCCAAAGATCTGAGATGGGAACAAGTTATTCCACCTTG  1099
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGATGGCTTCTGCCAAAGATCTGAGATGGGAACAAGTTA-TCCACCTTG  1096

seq1  GAAAATTAGCAAAGAGTATCTGGCATGCTGGGACAGAATAAATAGGGTAA  1149
      ||||||||||||  ||||||||||||||||||||| ||| || |||||||
seq2  GAAAATTAGCAA--AGTATCTGGCATGCTGGGACAAAATTAA-AGGGTAA  1143

seq1  GAACTACTATGATG-CTTAAGTCTTCAGGT-ATCTATGGGTTACACTCGC  1197
      |||||||||||||| || |||||||||||| |||||| |||||| |||||
seq2  GAACTACTATGATGCCTAAAGTCTTCAGGTAATCTAT-GGTTAC-CTCGC  1191

seq1  TCCCCTAAGAATCAG  1212
      ||||   ||||||||
seq2  TCCC--TAGAATCAG  1204