BAC Information

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BAC

Clone NameB6Ng01-112I01
Chromosome1 (Build37)
Map Location 93,374,413 - 93,585,588
singlet/doubletdoublet
Overlap geneTraf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I01.bB6Ng01-112I01.g
ACCDH918548DH918549
length9431,110
definitionDH918548|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I01, 5' end.DH918549|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,584,650 - 93,585,588)(93,374,413 - 93,375,521)
sequence
gaattccagggcacgaggacaatggaaagctcagatggatccccagaggg
agggggaccctgggcttggcagagagaaaggctgggcccaacaattccag
tcactgagggtagctgtcaatcatgagtaaggggagaggatctgtgggct
caactggaggtcactgccaagttaggagcaggctggaagctgagacacct
ccccctccttggagttgtctctgtagatgcatttcaagcccctgtctttt
aattagcatgttaatttctctgacaaggggctagttcaagttgcatgctg
tctttcagatcttctagggtgctgagtcaaatgttacagacaatcctcag
ggcactatggtccaactgcttaatttccggatgtgttgggctttccagat
gttaacaggaaaagctccagagaaatgttcacctctccctacactgcaga
taagaacaggaagttcaacatgcttagcaaaatcacatacttatgtaacc
tctgatcacccaacaattcctcctctaagaacagatctgaagagcacact
aagaaaaaaatgtgcttatataaaggcataaagcaagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgttcacagtcagctattggatggatcacagggcccccaa
tggaggagctagagaaagtaaccaaggagctaaagggatctgcaacccta
taggtggaacaacaatatgaactaatcagtacccccccccctccccgagc
ttgtgtttctagctgcatatgaatcagaagattgcctagttggccatcag
tgggaagagaggcccattggtcgtgcaaactttatattgcctcagtacag
gggaacgtcagggccaagaattgtgagttgggtgggtgcgggg
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaaagacgcaacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaggagtgcaagaagaaag
agagagagaaaacgaaaccccgtcccttttttaggagagttatatttcgc
ctaggacgtgtcactccctgattggctgcagcccatcggccgagttgacg
tcacggggaaggcagagcacatggagtggagaaccaccctcggcatatgc
gcagattatttgtttaccacttagaacacagctgtcagcgccatcttgta
acggcgaatgtgggcgcggctcccaacaattacacttctcctttcccaca
atgcatatcgttgtaatcatatgcacatccaattatgcatagacataaag
cagtaagcgggacttccccccaaaagctcattcagaagatacagtttgct
ttactgttcattcacccagaactggctcatgctggctcatcctttctctt
aagttcccataagtcctgggtcatgtttgaaaggagagaaacaatgggag
ggaaattgccaagaggttactaagggaggaaggcctattacactgtttgc
agtggagtgtgtgtgcgcagtttgatgctagcacgaggtgccaggctggg
cagtgcactgtttaaaaaggggtgcagattcagctcgagtcaggtggatc
ccaggtcgctgtctcccctcatttttcctgccttaatgaaacctgtaggt
ttcagagtcctcaattcggagcccacttaaaataagaactatttcccatt
tcttcaaaggtaagctttgttccatctggaagttttggtgtctaaggtct
tgccagctctgggaggttcctgctttgctgtatcatggttggctggtggt
tattggctggaccaccgagggagaaagagtacgtgttgaacagtaactta
gaggaaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93584650_93585588
seq2: B6Ng01-112I01.b_47_989 (reverse)

seq1  -CCCCCACCCACCC-ACTCGCACTTCTTGGCCCTGACGTTCCCCTGTACT  48
       ||| ||||||||| |||| || |||||||||||||||||||||||||||
seq2  CCCCGCACCCACCCAACTCACAATTCTTGGCCCTGACGTTCCCCTGTACT  50

seq1  GAGGC-ATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGG  97
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGGCAATATAAAGTTTGCACGACCAATGGGCCTCTCTTCCCACTGATGG  100

seq1  CCAACTAGGCCATCTTCTGATTCATATGCAGCTAGAAACACAAGCTCGGG  147
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGGCAATCTTCTGATTCATATGCAGCTAGAAACACAAGCTCGGG  150

seq1  GA-GGGGGGGGGTACTGATTAGTTCATATTGTTGTTCCACCTATAGGGTT  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGGGGGTACTGATTAGTTCATATTGTTGTTCCACCTATAGGGTT  200

seq1  GCAGATCCCTTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCCTTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGG  250

seq1  CCCTGTGATCCATCCAATAGCTGACTGTGAACATCCACTTCTGTGTTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATCCATCCAATAGCTGACTGTGAACATCCACTTCTGTGTTTGC  300

seq1  TAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG  350

seq1  CAAAATCTTGCTTTATGCCTTTATATAAGCACATTTTTTTCTTAGTGTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTTGCTTTATGCCTTTATATAAGCACATTTTTTTCTTAGTGTGC  400

seq1  TCTTCAGATCTGTTCTTAGAGGAGGAATTGTTGGGTGATCAGAGGTTACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATCTGTTCTTAGAGGAGGAATTGTTGGGTGATCAGAGGTTACA  450

seq1  TAAGTATGTGATTTTGCTAAGCATGTTGAACTTCCTGTTCTTATCTGCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGTGATTTTGCTAAGCATGTTGAACTTCCTGTTCTTATCTGCAG  500

seq1  TGTAGGGAGAGGTGAACATTTCTCTGGAGCTTTTCCTGTTAACATCTGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAGAGGTGAACATTTCTCTGGAGCTTTTCCTGTTAACATCTGGA  550

seq1  AAGCCCAACACATCCGGAAATTAAGCAGTTGGACCATAGTGCCCTGAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAACACATCCGGAAATTAAGCAGTTGGACCATAGTGCCCTGAGGA  600

seq1  TTGTCTGTAACATTTGACTCAGCACCCTAGAAGATCTGAAAGACAGCATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTAACATTTGACTCAGCACCCTAGAAGATCTGAAAGACAGCATG  650

seq1  CAACTTGAACTAGCCCCTTGTCAGAGAAATTAACATGCTAATTAAAAGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAACTAGCCCCTTGTCAGAGAAATTAACATGCTAATTAAAAGAC  700

seq1  AGGGGCTTGAAATGCATCTACAGAGACAACTCCAAGGAGGGGGAGGTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTGAAATGCATCTACAGAGACAACTCCAAGGAGGGGGAGGTGTC  750

seq1  TCAGCTTCCAGCCTGCTCCTAACTTGGCAGTGACCTCCAGTTGAGCCCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCAGCCTGCTCCTAACTTGGCAGTGACCTCCAGTTGAGCCCAC  800

seq1  AGATCCTCTCCCCTTACTCATGATTGACAGCTACCCTCAGTGACTGGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCTCCCCTTACTCATGATTGACAGCTACCCTCAGTGACTGGAAT  850

seq1  TGTTGGGCCCAGCCTTTCTCTCTGCCAAGCCCAGGGTCCCCCTCCCTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCCCAGCCTTTCTCTCTGCCAAGCCCAGGGTCCCCCTCCCTCTG  900

seq1  GGGATCCATCTGAGCTTTCCATTGTCCTCGTGCCCTGGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCATCTGAGCTTTCCATTGTCCTCGTGCCCTGGAATTC  943

seq1: chr1_93374413_93375521
seq2: B6Ng01-112I01.g_69_1178

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGACCGGCCAGGAAAGACGCAACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGACCGGCCAGGAAAGACGCAACAGACCAGAATCTTCTGC  200

seq1  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGTGCAAGAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGTGCAAGAAGAAAG  250

seq1  AGAGAGAGAAAACGAAACCCCGTCCCTTTTTTAGGAGAGTTATATTTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAACGAAACCCCGTCCCTTTTTTAGGAGAGTTATATTTCGC  300

seq1  CTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACG  350

seq1  TCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATGC  400

seq1  GCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTA  450

seq1  ACGGCGAATGTGGGCGCGGCTCCCAACAATTACACTTCTCCTTTCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGAATGTGGGCGCGGCTCCCAACAATTACACTTCTCCTTTCCCACA  500

seq1  ATGCATATCGTTGTAATCATATGCACATCCAATTATGCATAGACATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATCGTTGTAATCATATGCACATCCAATTATGCATAGACATAAAG  550

seq1  CAGTAAGCGGGACTTCCCCCCAAAAGCTCATTCAGAAGATACAGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCGGGACTTCCCCCCAAAAGCTCATTCAGAAGATACAGTTTGCT  600

seq1  TTACTGTTCATTCACCCAGAACTGGCTCATGCTGGCTCATCCTTTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTCATTCACCCAGAACTGGCTCATGCTGGCTCATCCTTTCTCTT  650

seq1  AAGTTCCCATAAGTCCTGGGTCATGTTTGAAAGGAGAGAAACAATGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCATAAGTCCTGGGTCATGTTTGAAAGGAGAGAAACAATGGGAG  700

seq1  GGAAATTGCCAAGAGGTTACTAAGGGAGGAAGGCCTATTACACTGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGCCAAGAGGTTACTAAGGGAGGAAGGCCTATTACACTGTTTGC  750

seq1  AGTGGAGTGTGTGTGCGCAGTTTGATGCTAGCAGGAGGTGCCAGGCTGGG  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGGAGTGTGTGTGCGCAGTTTGATGCTAGCACGAGGTGCCAGGCTGGG  800

seq1  CAGTGCACTGTTTAAAAAGGGGTGCAGATTCAGCTCGAGTCAGGTGGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCACTGTTTAAAAAGGGGTGCAGATTCAGCTCGAGTCAGGTGGATC  850

seq1  CCAGGTCGCTGTCTCCCCTCATTTTTCCTGCCTTAATGAAACCTGTAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCGCTGTCTCCCCTCATTTTTCCTGCCTTAATGAAACCTGTAGGT  900

seq1  TTCAGAGTCCTCAATTCGGAGCCCACTTAAAATAAGAACTATTTCCCCAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAGAGTCCTCAATTCGGAGCCCACTTAAAATAAGAACTATTT-CCCAT  949

seq1  TTCTTCAAAGGTAAGCTTTGTTCCATCTGGAAGTTTTGGTGTCTAAAGGT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTTCAAAGGTAAGCTTTGTTCCATCTGGAAGTTTTGGTGTCT-AAGGT  998

seq1  CCTGCCAGCTCTGGGAGGTTCCTGCTATGCTGTATCATGG-TGGCTGGT-  1048
      | |||||||||||||||||||||||| ||||||||||||| |||||||| 
seq2  CTTGCCAGCTCTGGGAGGTTCCTGCTTTGCTGTATCATGGTTGGCTGGTG  1048

seq1  GTTA-TGGCTGGAACACACGAGGGAG-AAGAGTACGTGGTGACACAGTAA  1096
      |||| |||||||| ||| |||||||| ||||||||||| ||| |||||||
seq2  GTTATTGGCTGGACCAC-CGAGGGAGAAAGAGTACGTGTTGA-ACAGTAA  1096

seq1  CTTAGAGG-AGGTG  1109
      |||||||| |||||
seq2  CTTAGAGGAAGGTG  1110